rna4004, rna4004 (mRNA) Nannochloropsis gaditana

Overview
Namerna4004
Unique Namerna4004
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length459
Alignment locationCM002462.1:607740..608210 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g114.8206.mrna
Orig protein idgnl|cribi|Naga_100001g114.8206
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:607740..608210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g114gene3852Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4004rna4004-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26695.1cds3994Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4004 ID=rna4004|Name=rna4004|organism=Nannochloropsis gaditana|type=mRNA|length=459bp
ATGAGCAGAAGTGACGAAAAGGGAAACGTCAATGCCAACGCGGCAGGGAC
GCAAACCAATATCACAGAGGGCAAAAGAATCGCTTATACGATTTCCGTGG
CGGCGGATGGACCATACAAGGACGGAGCAGCCGTTTTAGCCCATGCTATT
CGCAAGGCGGTGAAAGACTCTCATTACAGCATGGAGCTCATCGCCATGGT
GCATCCGAGTGTTACGACCACCCATGCGTCCTTAACATATGCCAGCTGGA
AACATCTGGACCGAGACGTCCCGTTGGATGTGAAGAAGATAAAGGGCACC
TACATGAGAAAGAACAGCGCTAAGAATGGATGTTGCGATGCTTTGGAGCT
CATCAAGCTACATGCCTGTCTACTGGATGGATACCATTTATTGTCCATTT
GGACATGGACTCTTAGATTTCGAAATCTCTGGACGCATTGTTCGATTTTC
CGGACTTAA
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protein sequence of rna4004

>rna4004-protein ID=rna4004-protein|Name=rna4004|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MLDTLDCRQTDPLFVKSVHFTVCQKPWDCAYSRKVPSCEHFVKEWYKLRK
AFREAAAFVEPCTRAQSQF
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mRNA from alignment at CM002462.1:607740..608210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4004 ID=rna4004|Name=rna4004|organism=Nannochloropsis gaditana|type=mRNA|length=471bp|location=Sequence derived from alignment at CM002462.1:607740..608210+ (Nannochloropsis gaditana)
ATGCTGGACACCCTGGATTGCAGACAAACTGATCCTTTGTTTGTCAAAAG
TGTGCATTTCACTGTCTGTCAGAAGCCTTGGGATTGCGCTTACTCCCGCA
AAGTCCCGAGCTGCGAACATTTCGTAAAAGAGTGGTATAAGCTCCGAAAA
GGTACGTGACGGTGAAACTATGGATAAGCGCTTCTACACAATATCTAGAT
TATTGATCAAAGCCCAGCATGGTGTTCTCTTGTGTGTCTTGTATTCCTCA
GCCATCTTCAATTTTTTTGTGTCTACCATAGTTGAATCGCACTTATTGTG
CGCTTTATTAAGTCTTTGTGTCCTGCGCTTTGCATAATAGAATGAAGACT
AGATAGCGTTAATTCCTCCATGAATGTTCACTTACTATGAAATCCTTTTA
TAAACCGGGTAGCGTTTCGTGAAGCTGCCGCATTTGTGGAGCCCTGTACC
AGAGCTCAGAGCCAATTTTAA
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Coding sequence (CDS) from alignment at CM002462.1:607740..608210+

>rna4004 ID=rna4004|Name=rna4004|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002462.1:607740..608210+ (Nannochloropsis gaditana)
ATGCTGGACACCCTGGATTGCAGACAAACTGATCCTTTGTTTGTCAAAAG
TGTGCATTTCACTGTCTGTCAGAAGCCTTGGGATTGCGCTTACTCCCGCA
AAGTCCCGAGCTGCGAACATTTCGTAAAAGAGTGGTATAAGCTCCGAAAA
GCGTTTCGTGAAGCTGCCGCATTTGTGGAGCCCTGTACCAGAGCTCAGAG
CCAATTTTAAATGCTGGACACCCTGGATTGCAGACAAACTGATCCTTTGT
TTGTCAAAAGTGTGCATTTCACTGTCTGTCAGAAGCCTTGGGATTGCGCT
TACTCCCGCAAAGTCCCGAGCTGCGAACATTTCGTAAAAGAGTGGTATAA
GCTCCGAAAAGCGTTTCGTGAAGCTGCCGCATTTGTGGAGCCCTGTACCA
GAGCTCAGAGCCAATTTTAA
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Synonyms
Publications