rna400, rna400 (mRNA) Nannochloropsis gaditana

Overview
Namerna400
Unique Namerna400
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4111
Alignment locationCM002455.1:994471..994819 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g86.1768.mrna
Orig protein idgnl|cribi|Naga_100003g86.1768
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:994471..994819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g86gene384Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna400rna400-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30251.1cds400Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna400 ID=rna400|Name=rna400|organism=Nannochloropsis gaditana|type=mRNA|length=4111bp
CGGGTAAAAGTAGACCGCGTGCATTGGAAGCAAGCTGTATGTCCCATGTC
TAGTGACAGGTCCCATTTGCGGTCGCCGTGGCGCTCTCGGTATTCCGTCA
GGGCGGACATGCATTTTAAGCCAATGGGAGGGCACAACCGGGCCACGCAA
ACCCGCTGCTCCTGCCGGTTCCTGACACCGAGCGAGCCCTTGCGGTGAAA
TCCCCCAGCAATCAAGAGCCCTGACAACATCAGTTTTGGATGCTTGGTTC
CTTGGTTACGAGCTGAAGGTCAAAAGTCTTTCGACAGCTCGGCCGAGAGC
AGCAGGATCAGGATCTAGCAGGTGCAAGAGCAACACACGAAAGCAAGCTT
TGGACACAGTCATGAACGACAACCTGGAATCTTTCCGGTCTGATGCAGAG
GATGCCAATGAATTTTTCGATATGGAACCCGAGGATGCCTCCAAGGAGGT
GGGCCTGCCAATGGTATGCGAGGAGAAGGAAATACTCGGAAAGGAGAAAC
GTCTTGAATGCGAGGACGCAGGCGACGAGGAGGGGGAGGACGACATCGAG
GTCATGGACGAAGACGATTCTGTCGCATCTATATGCGTTGATGAAGTTTT
CGCTGGTAAAGATGCTGCTGAAGCCCCTTCGGCGCCTGTGCGGCGGCACT
TGAAGGTGCGTAGCGTATGTGAGGGCCTTCGTCATGCTCGTACGGCACTT
CCCAGGAAGCGCGAGCCCGAGGAGGGCAATTTAGGGTTGGTGCGACACCA
CGATCATCCCCAATGAACTCGCGATACTAAGAAGTTAATGTGGATGCCTT
CTTGTATCTCCTTTTTTCTATGAAACGACAGCGCAAGGCCGCTCTGAAAA
AGGCGCCCGGGGCTCCCAAGCGCTTTAAGAGCCCCTACATCCTTTTTTCG
ATCGAGTGTCGAGAGGCCATCAAACGCCAACTTCCCTCCCAAGCTAAAGT
GACTGAGATCATGAGCAAAATCGCCGAGACGTGGCGGAAACTCTCGGAGA
AGGAGCGGCGGCACTGGGAGGCCCTGGCAGAGAGGGACCGGGCAAGGTAC
GACTCGGAAATGTCCCGCTACCAAGGGCCTTTAAAGGTGCCCAGAGTCCG
TCCACGCCGCTATCCTGACCAACCCAAACGGGCAACGTCGGCGTTCATGC
AGTTTGTGCGTTCCGTGAAAGCCCGGGTGCGACAGCAACACCCGGAGATG
AGCAACAGCGAGATCATGAAGATGCTTACTGAACAGTGGAGGAGCGCGAG
CAAAGAGGATAAGCTTCCTTTCCTCGAGAAGGAAAGAGAGGAACGGGCGA
TCTATAAAACAGCCATGGAGCAGTGGCAAAAGGAAACGGGGCGCGTCGCG
GACGACGCCTCCCACGCGCCAGAAGAGGGACGGGCCATGTCCATGCTCCC
CTCCCCTGGAACGGAGGGAAGAGAGAAAGCTTCGATGCCGGAGCAGGGTA
TAACCACCACGGTCTCAATAAGAAGTACCAAGGCGAAGGCGCGTGTTCCA
CCGCCCCCGGTCACCGACGGTCATTGGCCCTCAAGTCGCTCTGATGCACT
GCCGGCGTGTGAGCCTGTGTTTCCCGAGCGACACGAGCACGCCCCGGCGG
CCCAGCCAGCGCCCTCGATTTGCTCGCAGACCGGCCTGGGCCTACCCACC
TTGAAGGCCCAACACCAGGAGCAGCGCCAGCAACAGCAAGCCCGGCAACA
GCTGGCAAGGGAACAACAGGAAAGGCAACACCGTTTGCAGCAGCAACAGT
TAGAGCAAAAGCAGCTACGCGAGCAACGAGAAAACAAGCGCGAACATCAG
TGGGAGCGAGAGGGGCAGGTCGCGGAATACGAGGACGACTCCTTTCTCAT
GGATTACTTGAACGCCGCCCATGCCTCGTTTGCGATTTATGACAACTTTA
TGCGTGGCATTGAGACGGAAGCTGCTGCGGCGTTGGCCATCTCGTCCCAG
AGGGTGAGCAGCGTGAGTGCTTACGCGAGCAGCAGTGGATCTACCCGAGG
TCAGAATGAAACTACGCGCGTGGCATCGAAGCCACCGGGGTCCTCATCGT
CTTTCGCGTCCGGGGATTTATCGCGGAACTCGAACGAATGGATTTCCGGT
GGAGATTCCTGGAAGGATCATACGTCATCGCCTCTCAAACAGGAGCCAGG
TAGCGATGTGAAGGGGTTCAGATCCGCCCGCTCTCCTGCAACCAGTCCGG
TCGATTCATGCGGCGCTCTCAGTGACTCTTCCGCCGCCTCGGCGCTGGAA
AGCCACGGCAGTTGTCGTTTTCGTAGCCGCGACGAGGCAAGTGTAGGCGG
AGGATGGCCTGCCCGGGGGAAAAAGGGTCCGGACGAGGCGCATCACTCCA
GCTCATTTCCGGCCATCGGCGCGGCCTCTTCGGTGTCGGGAGAGTCGTCT
GTCGCTGGGGATGACGTCGCGAGGAAACCACAGATGGCTTTGGCAACGGG
AAGACTATCCACATCAGCCCTACAGACTTCAAAGCCATGCGGAAGGGAAG
ACATTCCACTGCCGCAAATAGCGCCACACCCACCCGTCGATCTTGGCAAG
CGTGCAGTCAGTCCAGAGTCAGGGTCTCCTCTATTTAATCGACCGCGACA
AGGGGACCAGCTAAGTAGACCGTTGGAAAGCGCCGCCAGGGGACATCATA
TCCTTGGCCTGTTGCCAGCAACGCCTTGCTCTCCCAGCAAGTGCGCTCCC
CTCCCTGTCGCCGTTGTCGAGGCTGTTCGTCCCTCTTCTTCAGCCGAACG
CCATTCTTCGCCTTTTCTTCAGAAGCTCGATGTCGAGGGAAAGGCAATCG
AGAGTCAGGGACACGAAAATGAGCATCCTCATCACCCTCCTATGCTTGTG
GTCACGACAGCGACGCCCGAGGGCGGGGTTCGACAAACGACATACCAACG
ACTTCCAGCTGAATGGCCACCCTCCTCCTCCTCATTGAATGCAACTCAAA
GTCTCACACGCGAGGAACTTTCTTGAAGGTCCAAGAGATAGTTTGCATAC
GACGAAGGCGTAGGACTGGCTAGAGGTGAAAGGCAGGAGGATGGTTTGGC
GCGGCCATGTCAGCGTGGTAGCATGAATGGCTCCTTGGCAGTGGGCAGTA
GCGCACCTGCCTGGGAGTGTGCTAGCATACCAGCCCGATCGTCTTCCGGC
GAGTTGACTGTTGAAAAGAGATCTTGAATTTGTAAGAAGCATCGGCGCTT
CAATGCACGGTGCAAAGGTCAGCACTCATGGATGCCCTGCATCTCCATAC
CCAACTTAATGTCCAGTGGAGGCGATGAGATAAGTGTGTGGTATAACCAG
CCGCGATAAATTGAAGCACTAGATAATTTGCCAGACAGATGACTAATTTG
CCAGACATGTGAGTAAGGCAAGGCCAGAAAAAGCAATGAACGCGATTGAT
TTCTGGGCTCAGAACTTGACCGGGAAGACTGACCTTTATGTACCAGCAAT
TCACCTCTTCGCGTCCAGTGCCCTGAGATGCGTAAGATATACTTGGGGGA
AGAGAGCTTGTTCTGTTTGCATGACAGAACGATCCGTGATTGCATTTGCT
TGCCGATATTGCTGCTCCTCGGAAGGAACGACGACAAGGGTGAATCCGAC
GAATAAGACCCGTGTGTCTGTCCATCGAATAAAACAAAGCGTTTGGACTG
CAAGATGAGAACGACGCATCTATTTTTGTATCCGACTCAGTCGTGAATTG
CTTATCAACCACACATGAAAGAAACCTTACACATGGGAAAAAATGATGGT
TACGTATTCAGAAAGTCTCGACTAAAATTTTACATTCGATTAGGTTTGTC
AAGACCCTACCAAAATATATTAAACCCTCGACATCTTCTGCAGCCATCTA
TTTTATCCGAAGGGGAACTACTAAGTTATGCATCAGGAGCAAGGGGCAAA
GGCGGAAATCATTTTACATTCATCGCTACCGCTACGAACACTACACGGAC
TACAATCAGGCGCACTCAGACCTTAAACTGACGCGTTCCCGATTACGCAG
TGAATTGCTGTCCTCACCCTACCCAGGCAAGACGATAAATGGTTCTGTTC
CAAGGAAAGTGATGGAAAAATAGGTAAACAAGCAAAAAATAAGAGCCTCG
CGATCCTCCCC
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protein sequence of rna400

>rna400-protein ID=rna400-protein|Name=rna400|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MACRSVMMLLKMVIYEVVTSRMEVYDHKPLLNTSDTRKSHGEDREALIFC
LFTYFSITFLGTEPFIVLPGAPDCSPCSVRSGSDECKMISAFAPCS
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mRNA from alignment at CM002455.1:994471..994819-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna400 ID=rna400|Name=rna400|organism=Nannochloropsis gaditana|type=mRNA|length=349bp|location=Sequence derived from alignment at CM002455.1:994471..994819- (Nannochloropsis gaditana)
ATGGCGTGCAGATCTGTCATGATGCTTTTAAAAATGGTAATTTACGAGGT
AGTCACTTCACGGATGGAAGTGTATGACCACAAACCTTTGCTGAACACCT
CTGACACGCGAAAGTCTCATGGGGAGGATCGCGAGGCTCTTATTTTTTGC
TTGTTTACCTATTTTTCCATCACTTTCCTTGGAACAGAACCATTTATCGT
CTTGCCTGGGTAGGGTGAGGACAGCAATTCACTGCGTAATCGGGAACGCG
TCAGTTTAAGGTCTGAGTGCGCCTGATTGTAGTCCGTGTAGTGTTCGTAG
CGGTAGCGATGAATGTAAAATGATTTCCGCCTTTGCCCCTTGCTCCTGA
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Coding sequence (CDS) from alignment at CM002455.1:994471..994819-

>rna400 ID=rna400|Name=rna400|organism=Nannochloropsis gaditana|type=CDS|length=582bp|location=Sequence derived from alignment at CM002455.1:994471..994819- (Nannochloropsis gaditana)
TGCGCCTGATTGTAGTCCGTGTAGTGTTCGTAGCGGTAGCGATGAATGTA
AAATGATTTCCGCCTTTGCCCCTTGCTCCTGAATGGCGTGCAGATCTGTC
ATGATGCTTTTAAAAATGGTAATTTACGAGGTAGTCACTTCACGGATGGA
AGTGTATGACCACAAACCTTTGCTGAACACCTCTGACACGCGAAAGTCTC
ATGGGGAGGATCGCGAGGCTCTTATTTTTTGCTTGTTTACCTATTTTTCC
ATCACTTTCCTTGGAACAGAACCATTTATCGTCTTGCCTGGTGCGCCTGA
TTGTAGTCCGTGTAGTGTTCGTAGCGGTAGCGATGAATGTAAAATGATTT
CCGCCTTTGCCCCTTGCTCCTGAATGGCGTGCAGATCTGTCATGATGCTT
TTAAAAATGGTAATTTACGAGGTAGTCACTTCACGGATGGAAGTGTATGA
CCACAAACCTTTGCTGAACACCTCTGACACGCGAAAGTCTCATGGGGAGG
ATCGCGAGGCTCTTATTTTTTGCTTGTTTACCTATTTTTCCATCACTTTC
CTTGGAACAGAACCATTTATCGTCTTGCCTGG
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Synonyms
Publications