rna40, rna40 (mRNA) Nannochloropsis gaditana

Overview
Namerna40
Unique Namerna40
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length660
Alignment locationCM002455.1:115175..115739 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101840g1.180.mrna
Orig protein idgnl|cribi|Naga_101840g1.180
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:115175..115739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101840g1gene38Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30633.1cds40Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna40rna40-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna40 ID=rna40|Name=rna40|organism=Nannochloropsis gaditana|type=mRNA|length=660bp
ATGGGCACCGAAGCGTCGAGCTGGCAGGCACAAAAGTGTGCGAGCTGCGG
TCAACAGCCAGCGTGGTTGGGCACCCCATCGTCCGCACAAGCCGTTCCTC
CCTATTTATCCCCTCAGCCCCTGCTTTCTCCTTCCTTCCTTGACCGGTCC
AAGGCGGGCACTGGAGATAAAGGCGACCATGGCCTCCTTACCTTTCCGTT
TGTCTGGCGGAGGCAACAACAACGCGAGGTACGCCCCTCTTTCTACCACC
ACTTTGTCGGACTCGGCCTCGCATGCGGGGGGGACATACTCCCCCCCCCG
GTCTCGCCCCCCCCCATTTCCGCTTCCCTCCGCCGTTGCCTCTCTGCCTC
TTTCTCCACTACTTCGCCCTGCTTTTTCGTCGTCCTTTTCTTCTCCGTCG
TGGCCGTTTTTCTCTGGGGTCCGTGGACCTACCTGCCGTCCACCCTCCAT
CCCCTCGGTCAGGCACTTTCCTCCCTCACAGGGGGGTGCCATCCGGAGGA
TTTTGAAAGGCTGGGTCGCGCGGTGTGGGTGGCAGATCCTGCCTTTGCTC
GCAAATTAGGGTTCTGCTCGGAGCCTCTATCAAACAAGTGCATTACTTCC
AGGAGGACAAGCCCTTGTGCCTCGTTCCGCACCGTCGCTACGACGAGCTG
GTCCAGGTAG
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protein sequence of rna40

>rna40-protein ID=rna40-protein|Name=rna40|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
LSSPPPAPRPLPPFLPPPRPSAPPSLPLPPPAPPPSLSPALPSSLPMACG
GNALPPPPTDRISRVRISGSGRFQEGEARVRCGRSKGLLLCRGGLWEGGR
EKGRKGGGTGKGGRLEEEEEKG
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mRNA from alignment at CM002455.1:115175..115739-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna40 ID=rna40|Name=rna40|organism=Nannochloropsis gaditana|type=mRNA|length=565bp|location=Sequence derived from alignment at CM002455.1:115175..115739- (Nannochloropsis gaditana)
CCTCTCTTCGCCACCACCCGCTCCTCGCCCCCTCCCTCCTTTCCTCCCTC
CCCCCCGCCCTTCGGCCCCTCCTTCTCTTCCCCTTCCTCCTCCCGCCCCA
CCTCCCTCCCTCTCGCCAGCCCTCCCTTCTTCTCTCCCGATGGCTTGCGG
GGGTAACGCCCTCCCTCCTCCCCCGACGGACAGAATCTCCCGCGTCAGGA
TAAGCGGGTCTGGTCGTTTCCAAGAGGGAGAGGCGAGGGTCAGGTGTGGG
AGATCCAAAGGGCTTCTCCTATGCAGGGGGGGGTTGTGGGAGGGAGGGAG
GGAAAAGGGAAGGAAAGGAGGAGGAACAGGGAAGGGAGGAAGGTTGGAGG
AGGAGGAAGAGAAAGGATAGAGGATAGGATGGACAGAAGAGGTGCACGGA
CCCCCGCCCAGCTGGCAAATACAAAAGGAAATTCAAAATGATAGCCATCT
TTCAAAAAAATTAAACTTCAATTTTTGGGGCCCCGCAACGCCGGAGAGTT
GCCTCAGCGCTTGCCCCGGTGCCTTTACCTCTGCGCTTCACGGACGTGGC
TTTCGTGCGTCGCTC
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Coding sequence (CDS) from alignment at CM002455.1:115175..115739-

>rna40 ID=rna40|Name=rna40|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002455.1:115175..115739- (Nannochloropsis gaditana)
CTCTCTTCGCCACCACCCGCTCCTCGCCCCCTCCCTCCTTTCCTCCCTCC
CCCCCGCCCTTCGGCCCCTCCTTCTCTTCCCCTTCCTCCTCCCGCCCCAC
CTCCCTCCCTCTCGCCAGCCCTCCCTTCTTCTCTCCCGATGGCTTGCGGG
GGTAACGCCCTCCCTCCTCCCCCGACGGACAGAATCTCCCGCGTCAGGAT
AAGCGGGTCTGGTCGTTTCCAAGAGGGAGAGGCGAGGGTCAGGTGTGGGA
GATCCAAAGGGCTTCTCCTATGCAGGGGGGGGTTGTGGGAGGGAGGGAGG
GAAAAGGGAAGGAAAGGAGGAGGAACAGGGAAGGGAGGAAGGTTGGAGGA
GGAGGAAGAGAAAGGATAG
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Synonyms
Publications