rna4, rna4 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4
Unique Name	rna4
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2314
Alignment location	CM002455.1:12088..15068 +

Link to JBrowse

Properties


Property Name	Value
Product	Indigoidine synthase A
Orig transcript id	gnl\|cribi\|Naga_100091g13.5708.mrna
Orig protein id	gnl\|cribi\|Naga_100091g13.5708
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:12088..15068 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100091g13	gene4	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4	rna4-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30659.1	cds4	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:12088..15068+
coding sequence from alignment at CM002455.1:12088..15068+

mRNA sequence

>rna4 ID=rna4|Name=rna4|organism=Nannochloropsis gaditana|type=mRNA|length=2314bp
TTGTTTTTCCAGACCTTTCCCCGGTGTCTGTTCCCTTCCATCGAAGCACC
TCACCGCACCAATTTTATACATGCCCGACGCAGGTTGCGATTGATTTCAT
CTTCGTGCGGCACTCGCATTCTTGTTCCGCGTAGGTACACGCTTCCTTGG
CGAGGACGTGAGGTCATTACGTCACCGCCTCCTCTCGATCGAATGCCTAA
AGGACACAAAAGGCGTCGACCCCTCGCCTCTGGCTCTCGACCTGTCTCAG
TCCTAGCCCTCATCCTTTGCTACTGCATGTACACTGAAGCCGCGGGCTCT
CTTTTCGCAACCCCGCGGCACCATCGCCCTCCATCGCTCGCTGCATTTGG
CACACCTCCTCCTCCAAGGCCCTCGGTTGCAGCCCCCGGTAAAATACCTG
GGACCCCGCCATCGAGCTCTCTTCCTGCGACTCTCAGTTGTAATGCAGCA
AGCGTGACAAGCCGGCCGTACGTTATGCCCTCGGCACCACCACTACAGAA
ATCCTCCGAAGTGACCCCGCTTATCACTTCTACAACCTGCTTGCCCTATC
CTTCTCTCCTCTCTCCTCCGATCTCTTCGTCGCTGTCCATCGCCTCCACC
CCTTGTCCTCCTCCCCTGCAGTACAAGCTGACGCAGCAAGATATAAGCAT
ATCAACTTTCAATATTCTGGCTCCGTGCTACAAGCGCATGAAAGACGGAG
GGCGCGAAGCAGACTTCCCTGAGCGCATGGAGAGCAGGGCTTTGGAAACA
GCGGCATTTATTAGGAGGGAGCTCGACACCGACATTATTTGTCTGCAGGA
GTTCTTCGTGCAGGACGAGGGCTACACCACTCTCTTCTCCTCTTCCTTGG
CCGACGCCTATGACTTCTATCTCCACCCGCGGCCGAGCAAGAAGGACGGA
CTCGGTGTTTTGCTCAGGAAGGGCAAGTTTCGCCTACATGGAGCGCGGGG
GGCGACCTTGTCGCGTTGGGGTAGCCGTGTCGGCCTACTGATGGACCTCG
AGACGCTCGCAGGCGCGACTTCGGAGCAGGAGGGGCAGCGGATCATCTTG
CTGAGCACGCATTTGTCCTTTCCCCACAACCGCTTCGACGAGAACCAGCA
GCACCGACAGGTCTCATCACTTACGCGCATGCTAGAAGCTTACGTGAAGG
GATGCCCGGCCCTGGGTGGACAGCGCGATGTGCTGCAGATCCTGTGCGGA
GATTTCAACGTGGATTTGACCAACCCCGTCTTGGCTCCCATCCACGCCCT
TGGTTTTCAGCACGTGCGGGAGGAGGGAGAAAGGGGAGACGGGGCCGACT
TCGTTACGCATCGGACGCACCGTGGGGACGATGTGGCGGTCGATCACATT
TTTTACAGGTCCTTCAACGCGGCCAGACATCGAAGGAGAGGAGCGACAGG
TAACACGTCCGAGGAGGATCCCAGAAGTAGAGGTCCAGAAGGTGCAACTA
TAGCCTTTCCTTTACATTCGTCGTGGCCGAGTTTCTGGGCGCGAAGAAGG
TCGGCCGATAAGAGAGAAGGGCCTCTACAGGGGGGTGACCCAGGCGGGAG
GGAGAAGACAGAGGGATCGACGCACGTGATTGGTGGGGCGGGGCAGCGAA
CGTGGAAGGACTTTATTCCCACCTCCAGTTGGAGTCGTGCGAGGTGGAAT
GCTAGGTCACGGCCGATGTATGGACCCGCAAGTACCAAATCCCCCCGCCG
ATCATCAGCCTCATCGGTCGTTTGGGGAGCAGAAGAGGCGAAGGCCGGTG
CGGGTGTATCCGAGGCCTCGGTACCCTCAGTTGCGGTCATGGATGTCGCT
TTGTGCCCGATATCGCTTGATGTTGGAACTTGGCCAAGAGAATTTGGTGA
AAAAATATCGGACCATCGACCCTTGCGAGCTTCACTGAATGTTACTAGGT
TTTTGATAGATGACCAGGACACAACAGCGTAAAACAACGCAATTTAGGGA
AGCTAGATAAGAGCATATTCGAGCTCGGATTGTCACCTCTTTGAAGCGAG
GTCGTACCTCAGAGATTTTGAGCTGACGTGTCATTGAGTTTCTCGAACAT
TTTTTGGTGTACACACAAAGTTTATGTGCAGAAGAGCCTACTAATGCGTT
ACTGATCCAGCAATAACTAGTAGACGTCGAAACACCCAATAAAATTACAT
TGTTAAGTAATTTTTGGTTTTATTTCGAGACGATGTATACATTACATCTT
ATGTACGCTCCATTTCTTTTCAAGGAAGGAAACGGATGCAGCGACGTGGC
AAGTTTTCGAAAAATATACCACGTGCTCTTGAACAAATACCAATATCACC
TTAACGTTGTCATC

protein sequence of rna4

>rna4-protein ID=rna4-protein|Name=rna4|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MPRLYRPSFRHVQGMRIPWHRAIARYASLPRGLRLSSAVQAALAAHKPVV
ALESTIITHGMPYPTNLQTAREVEKIVSAGGATPATIAVMDGHCCVGLSP
SQLEALAREGPERAIKCSRRDLSWALMTRSWGATTVASTLHIAHLAGIRV
FVTGGVGGVHRGAEETLDISADLMELGRVPNMAVVCAGVKSILDIEKTLE
VLETQGVPVVGYRTDTFPAFFTPDSGLGAPCRVDSPEEVAGMLEASLSAR
LPGSILVAVPNPAPAEASATQGAIEEALHAAETMGLRGQAVTPFLLERVN
KATGGGSLRANIELVKNNARVGTEIAVAIAAQEEGGMSRNGGGRGIGAME
GREGGRKAAGMAEQRQSLPSTQASKPTASPPSRTPSFPPRVLVVGGAVMD
VVGSPGSDYGASWTCGSEKHPRSLDARLKRLEPGSSTPGRVRQKEGGVAR
NVAEGLARLGVPTAFLSVVAQDPAGAALASSLRALAPSLLLECGHEDVIL
YQAPGPGHRTASCLVALDGGGSWWPPWRTWPSSAITSRRRGWWRA

mRNA from alignment at CM002455.1:12088..15068+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4 ID=rna4|Name=rna4|organism=Nannochloropsis gaditana|type=mRNA|length=2981bp|location=Sequence derived from alignment at CM002455.1:12088..15068+ (Nannochloropsis gaditana)
catccttctttcttctggTATTTCCCATATCAGGTTGTGGACTTGGACAT
CCCGCGCAGCGCATGGCACATCTTTGCGCTGTGCGTGTCATTGTGGGACA
GAGAAAAGCATTTGTCTGCGACCATTTACCTCCCAGTGCCCCcccgcttg
cctcctgccGTTAAGCTGCTGCGCTCGCTAGAAATCGGCACGAGCCATGC
CACGCTTGTatcgtccctccttccgccacGTCCAAGGAATGCGTATACCT
TGGCATCGAGCGATAGCACGCtatgcctctctccctcgagGGCTACGTCT
GTCTTCTGCCGTCCAGGCAGCACTGGCTGCGCACAAGCCCGTCGTGGCTC
TGGAATCCACCATTATCACGCACGGCATGCCATACCCTACCAATCTCCAA
ACTGCACGAGAGGTAGAAAAAATCGTCTCAGCCGGAGGGGCCACGCCGGC
AACCATCGCGGTCATGGACGGCCATTGCTGTGTGGGTCTGTCACCTTCCC
AACTGGAGGCTTTGGCCAGGGAGGGGCCCGAGCGCGCCATCAAGTGCTCT
CGGAGGGACTTGTCTTGGGCGCTGATGACTCGCTCCTGGGGCGCCACGAC
CGTGGCCAGTACGCTGCACATCGCTCACCTGGCTGGTATTCGCGTCTTCG
TCAcgggcggggtcggaggcgtGCAccgcggggcggaggagactcTGGAT
ATCTCGGCGGACTTAATGGAGCTGGGGCGCGTGCCGAATATGGCCGTGGT
CTGTGCGGGCGTCAAGTCCATACTGGACATCGAAAAGACGCTAGAGGTGC
TAGAGACGCAAGGCGTTCCTGTCGTGGGCTACCGGACAGACacttttcct
gcctttttcaCGCCCGATTCGGGTCTGGGAGCCCCTTGTCGTGTTGATTC
GCCCGAGGAAGTCGCGGGCATGCTGGAGGCATCCCTTTCTGCGCGTCTGC
CTGGCAGCATCCTGGTTGCAGTGCCGAACCCTGCGCCTGCGGAGGCGTCA
GCCACGCAAGGAGCgatcgaggaggcgctgcaTGCAGCTGAGACGATGGG
ATTAAGGGGGCAAGCCGTAACGCCCTTCCTGCTCGAGCGGGTCAATAAAG
CCACGGGCGGGGGCTCACTCCGGGCGAACATTGAGCTGGTGAAGAACAAT
GCCAGAGTGGGTACGGAAATCGCCGTGGCGATCGCggcacaggaggaagg
gggtatgtcaaggaatggaggagggcggggtattggggccatggaggggc
gcgagggagggaggaaagcagctGGGATGGCTGAACAAAGGCAGTCACTA
CCTTCTACCCAAGCGTCAAAGCCAAcggcgtctcctccttcccggacgcc
ctcctttcccccccgtgtCTTGGTGGTGGGCGGCGCCGTCATGGACGTGG
TCGGAAGCCCGGGCTCGGACTACGGGGCCTCCTGGACATGCGGAAGCGAG
AAACACCCTCGCTCACTCGACGCCCGCCTTAAGAGATTGGAGCCTGGCAG
CTCCACACCGGGGAGGGTGCGGCAGAAAGAAGGCGGTGTGGCCCGCAATG
TGGCGGAGGGCTTGGCTCGCCTGGGGGtgcccaccgccttcctctcggtG
GTCGCCCAGGACCCCGCTGGCGCcgcgctcgcctcctccctccgtgcctt
GGCCCCCTCGCTGCTGTTGGAGTGCGGGCACGAGGACGTGATCCTCTATC
AGGCCCCCGGGCCCGGGCACCGGACCGCGAGTTGTCTCGTCGCcttggac
gggggggggagctggTGGCCGCCGTGGCGGACATGGCCATCTTCCGCGAT
TACCTCACGccggagagggtggtggcgggcctAGAGAcagcggcggcctt
ggccgaggcccggaaaggaggggaaatggagcCCCCTGCCGGCGCTCCCC
AGGCCTCTCTGGGTCCTCACGCTGCCCCTCTGCTAGTCGTTAGCGACGGA
AACctttccatcgccgccttcaaAGCCCTTGCGCACGCCTGCGCCTCGCG
GGGGCTACCTCTCCTCTTCGAGCCCACGTCCGTAAGCAAGGCATGCCTCC
CATTGCAGGCAggcgccctccaccacacgAGCCTGATCACGCCCAACCTG
AAGGAGCTCGGGAGGCTTGCACACTCGAtccgggagggaagaagggaggg
tgcgaCAGAGGGCGATATGGCGTGGGAAAGGCTCGAGCAGGACGTGGTCG
CTGTGTTTGGAAAGAGGAGCTCCGGAGagcgggtggagagggaggtagtC
ACACGGCTGCAGGCCGACGTGGAGGTTGTCCTGGGGGCcatggcggacga
gggggaaaggagcgtaggcagagagaaggagggagaaaattcAAGCGCAA
GCCCTGGATGGATGGGAGAGAAGCACGTACTGGTCACGATGGGACCCCGA
GGTCTCGTGTGGGCGTCCTgtcgaagggaggacgggggggaggcagcgca
ggaggggggaccaGGAGGGCGTAGGGGGgcgaaggcaaagaggggagCTA
TCGAGATGCGATATTTTGCTGTACCGGGTGCGACACCGGTGGAGAGGATG
GTAAACTGTACAGGTGCAGGCGACACGTTCGTGGCTGGGCTTGTGGCCGC
CTTAGTGCGTGGCAGCGAGCggggcatgggggggggccgtggccgtcggg
ttggcggcggcgagagAATCCGttcaagtggaggaggcggttcCCAGGCA
CATGACTTGGGAGGGACTAACCGGCGCGCGGTGGGGCGGGTGAACGCCGC
TAAAAGTGCGGTGCATGGCAGCGCTGAAAGGGGGCTCCGCGATATGGCTC
GTCGATACTGTCGCGACTTCAAATCACTGGGAGAGGAAACTCGCGTTACC
GCATTGCGAAGCGCGAAACCAAGGCGTTGCATCAGTAGGGTGTGGGTCAC
GATGAGATTAATGTAAGTACTGCATCAAAGCAATCAGTCGAGGACTCTTG
GTCACCACGTCCATCACACTCGGTCGACAGT

Coding sequence (CDS) from alignment at CM002455.1:12088..15068+

>rna4 ID=rna4|Name=rna4|organism=Nannochloropsis gaditana|type=CDS|length=1638bp|location=Sequence derived from alignment at CM002455.1:12088..15068+ (Nannochloropsis gaditana)
ATGCCACGCTTGTatcgtccctccttccgccacGTCCAAGGAATGCGTAT
ACCTTGGCATCGAGCGATAGCACGCtatgcctctctccctcgagGGCTAC
GTCTGTCTTCTGCCGTCCAGGCAGCACTGGCTGCGCACAAGCCCGTCGTG
GCTCTGGAATCCACCATTATCACGCACGGCATGCCATACCCTACCAATCT
CCAAACTGCACGAGAGGTAGAAAAAATCGTCTCAGCCGGAGGGGCCACGC
CGGCAACCATCGCGGTCATGGACGGCCATTGCTGTGTGGGTCTGTCACCT
TCCCAACTGGAGGCTTTGGCCAGGGAGGGGCCCGAGCGCGCCATCAAGTG
CTCTCGGAGGGACTTGTCTTGGGCGCTGATGACTCGCTCCTGGGGCGCCA
CGACCGTGGCCAGTACGCTGCACATCGCTCACCTGGCTGGTATTCGCGTC
TTCGTCAcgggcggggtcggaggcgtGCAccgcggggcggaggagactcT
GGATATCTCGGCGGACTTAATGGAGCTGGGGCGCGTGCCGAATATGGCCG
TGGTCTGTGCGGGCGTCAAGTCCATACTGGACATCGAAAAGACGCTAGAG
GTGCTAGAGACGCAAGGCGTTCCTGTCGTGGGCTACCGGACAGACacttt
tcctgcctttttcaCGCCCGATTCGGGTCTGGGAGCCCCTTGTCGTGTTG
ATTCGCCCGAGGAAGTCGCGGGCATGCTGGAGGCATCCCTTTCTGCGCGT
CTGCCTGGCAGCATCCTGGTTGCAGTGCCGAACCCTGCGCCTGCGGAGGC
GTCAGCCACGCAAGGAGCgatcgaggaggcgctgcaTGCAGCTGAGACGA
TGGGATTAAGGGGGCAAGCCGTAACGCCCTTCCTGCTCGAGCGGGTCAAT
AAAGCCACGGGCGGGGGCTCACTCCGGGCGAACATTGAGCTGGTGAAGAA
CAATGCCAGAGTGGGTACGGAAATCGCCGTGGCGATCGCggcacaggagg
aagggggtatgtcaaggaatggaggagggcggggtattggggccatggag
gggcgcgagggagggaggaaagcagctGGGATGGCTGAACAAAGGCAGTC
ACTACCTTCTACCCAAGCGTCAAAGCCAAcggcgtctcctccttcccgga
cgccctcctttcccccccgtgtCTTGGTGGTGGGCGGCGCCGTCATGGAC
GTGGTCGGAAGCCCGGGCTCGGACTACGGGGCCTCCTGGACATGCGGAAG
CGAGAAACACCCTCGCTCACTCGACGCCCGCCTTAAGAGATTGGAGCCTG
GCAGCTCCACACCGGGGAGGGTGCGGCAGAAAGAAGGCGGTGTGGCCCGC
AATGTGGCGGAGGGCTTGGCTCGCCTGGGGGtgcccaccgccttcctctc
ggtGGTCGCCCAGGACCCCGCTGGCGCcgcgctcgcctcctccctccgtg
ccttGGCCCCCTCGCTGCTGTTGGAGTGCGGGCACGAGGACGTGATCCTC
TATCAGGCCCCCGGGCCCGGGCACCGGACCGCGAGTTGTCTCGTCGCctt
ggacgggggggggagctggTGGCCGCCGTGGCGGACATGGCCATCTTCCG
CGATTACCTCACGccggagagggtggtggcgggcctAG

Synonyms

Publications