rna3999, rna3999 (mRNA) Nannochloropsis gaditana

Overview
Namerna3999
Unique Namerna3999
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3575
Alignment locationCM002462.1:597085..599371 -

Link to JBrowse

Properties
Property NameValue
Productrab family gtpase
Orig transcript idgnl|cribi|Naga_100001g119.8104.mrna
Orig protein idgnl|cribi|Naga_100001g119.8104
GeneRab1B
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:597085..599371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Rab1Bgene3847Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3999rna3999-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26593.1cds3989Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3999 ID=rna3999|Name=rna3999|organism=Nannochloropsis gaditana|type=mRNA|length=3575bp
ATCTTTGGGGCTATTTTCGAACAGGAGGCGAAGCTACAATCTCCACAGGA
CTTTTCGTGAGGCTTCTCTGCACTTCAGAAGGACGGATATTTCGACACAG
AGGTGTCCTAATCGCAATCTTTTCACCGTGAAATCAGGAGTGTTACCAAG
GATCTAAATTTATCATGAGCATCGGTGGAACGGCAGAGGATGTAAATGGT
CTTCATGAAGGAGTGGCTGACTTGAGCATCGAAACAGCTTGGTCCGCACG
GCGCGTCCGACAAACGTTCATCGACTACTTTACTAACAAGAGGGAACACG
TATTCTGGCCCTCCAGCCCGGTGGTGCCGCATGATGACCCCACCCTGCTC
TTCGCCAACGCCGGCATGAATCAGTACAAGCCCCTCTTCCTCGGCATCGT
AGATCCCAAGCTACCCTTGTCCAAGCTGACGCGGGCAGTGAACAGTCAGA
AATGCATCCGAGCGGGCGGGAAGCATAATGATCTTGAGGACGTGGGGAAG
GATACGTACCACCACACATTTTTCGAGATGCTGGGCAATTGGAGCTTCGG
GTCCTACTTTAAAGAGGAGGCGATCGCCTGGGCCTGGGACTGTCTGGTCA
ATGAATTCGGGCTAGACCCTTCGCGTCTCTACGCCACCTACTTCGGGGGC
AACGAGAAGCAAGGGCTGACCGCTGACGAGGAGGCGCGCAATATCTGGCT
GCGGTATCTGCCTCCCAACCGCGTGCTCCCATTCGATTGCAAGGACAATT
TCTGGGAGATGGGCGAGACGGGCCCCTGCGGCCCCTGCACGGAGATCCAT
TACGACCGACTCCCTGCGCGGGAGGTGCCTGAACTGGTAAACATGGACTC
ACCCGATCTGATCGAGATCTGGAACGTTGTCTTCATACAGTACAATCGCG
AGGAAGGTGGGGCTCTGCGGGAGCTGCCGTCCAAGCACGTGGACACAGGC
ATGGGATTCGAGCGCCTGACCTCCATTTTGCAAGACAAACCCTCTAACTA
CGACACAGACATCTTTATGCCCCTTTTCGACGCCATCCAGGAGCTGACAG
GAGCGCCTCCCTACGCAGGGAAGCTGGGAAAGGCCGATCCCGAGAGCAGG
GACATGGCCTACCGTGTGGTCGCCGACCACATCCGCACCCTGACCTTTGC
CATTGCGGACGGGGCCGTCCCCTCCAACGACGGCCGCGGTTATGTGCTGC
GCCGTATCCTACGGCGAGCCGTCCGGTACGGAGCAAAAGTGCTGGGTGCC
GCCCCGGGCTTCTTCTCGAAACTGGTGCACGTGGTGGTGAACCAGATGAA
AGATATCTTTCCGGAGCTGGAGGAGAAGGAGAAAAGGGTCGTGGAGGTGC
TCGCAGACGAGGAGCGAGCCTTTAATCGTACGCTGGATCAGGGGGAGAAG
CATTTCAAGAAAGTGGCGGACGAGCTCCTGCTTGCGGCCAGTCAGCGGGG
GGGGGACAAAGGGGAGAAAGTGGCTTTCCCGGCCAAGGAGGCTCACTACC
TGTACTCGACGATGGGCTTTCCCGTAGATTTGACTGAATTGATGGCGGAG
GAAAAGGGTCTCACCGTGGACAGAGCGGGTTTCGAAACCTTGCTGGCAGA
GGACAAGCGGCAGAGCGCTATGGCAGCCGCGGCCAAGAAGGAGATGGGGG
GAAAGGAGATTGTGCTGGAGGCAGAGCAGACGGCTTGGCTGCAGTCGCGC
GGGGTGGAGATAACAGATTCAAGCCTCAAGTACGTGTGGCACCACGAGCC
ATCGGCGCGGGTGATGGCGCTGTACAAGGGCAAGGCTGTCGGTTTCGTGG
AGGAGGTGACGGCCGAAGACGGCGTGGTGGCGGTGATCCTCAACACCACA
TCCTTTTATGCGGAACAAGGCGGGCAAATTCACGACACGGGTGTCATAAC
TAATCTGGACGGCACGGATACGCTGCGAGTGGATTCCGTACAAAGTTATG
GCGGCTACGTCCTGCACATAGGACCCTTGGAATCGGGCGCGCTGCGGGTC
GGGGATACGGCCACCTGCATGGTGGACTACGAGCGTCGAGCCCGGATCGC
TCCCAATCACACGATGACTCATGTTTTGAACTACGCGCTGCGGCGCGTCC
TTTTGAAAGGCGTCTCGGACGGATCAGGACTCTGCGATCAGAAGGGTTCG
GCTGTGGACGACGAGAAACTACGCTTCGATTTTGCCTGGAACAAGGCGCT
GACAAAGGAGGAGCTGGCCGAGGTGGAGACGATAGTGCGAGAACGTATAA
GCCAAGAACTACCTGTCCATTCGTACATCGCTCCCTTGGAGAAGGCCCTT
CATATCAACTCGCTCCGGCAGGTGTTCGGAGAGCGCTATCCGGACCCCGT
GCGCGTCCTGAGCGTCGGACATGAAGTGCCCCCAATGCTTGAGGACCCGA
CCAACCCTGCTTGGCAAGATACGTCGGTGGAATTCTGCGGTGGGACACAT
CTCAGCAACACACGAGAGGCGGAGCGTTTCGCACTCATAGAGGAGACCGG
TATCGCTAAGGGCATCCGCCGGATTACAGCCGTGACTAAGGACATGGCCC
GGGCGGCAGAGGAGCTGGCGGAAGAATTTGCTGGTCTGCTGGCATTGGCA
GAGGTCAAACCGGAGGAAGAACTTGAGGGGGAGGTCAAGATGCTTAATAC
ACGTCTGGGTCCTCTTACCATCTCCGCGGTAGAGAAAGAGCGTTTTCGGA
CGGCGCTCGATGCTTTGCTGACCCGGGTGAAGAAATTTAAAAAGGAAAAA
GTGGCCCGGAGCCGAGATATCGCCTTAAGTCGTGTGACTGAGATCGCGAC
TGAGGCCGCAGCATCAGGAAGGTCAGTAGTAATCGAGCGTCTGGATTTTG
GGACGGACGGCAAGATTGCCAAGGAGGCTCTCGACAAGGCCTCTCAAATC
CATCCCAGTGGCTGTTTCCTTTTGATCAGCGCCGACGAGGACAGTGGGAA
ATTCGGCGTTTACTCAACTGCCCCCAAATTGGGCTCGCCCCTGGATCCTA
TCGCCTGGGTCGCTGCCGCTGTCGAAGGGGCGGGAGGCGGTCGAAGTGGA
GGAAAATCTCCTCGCGGGCAAGGGGTGGGAGAAGGGTTGGAAAAGATCGG
TTCTGCGGTGACAGCTGCCAAAGCTTTTGCAGGGGTGTGAGCTATAATGT
ACTTTTTTGACGGAAGGGCAGGAAGGGATCCAATGAAAAACAATGAGAAG
GCGATTAAACGCGACATGAGTGGCCGCTGTAAGGTGTTGGTGCCTCGCTT
CTTCCGAAGGACACAGCAAAGCACATTTTGTACCTGTACCAATCAAAAAA
GTGAAACATCGGGCGAAAGGCTTGAGAAGAAGACACCGAGTACTCGTGGA
AAGCGGAGTTCAGGTCTGCATGGCACAAAGGATGTGATATGGGAACTATC
GGGAAAAGATAGAAGGAAAGCTGTCCTTAAGCCGTCCGATAGAATCACGT
TTTTGAAAAGAGATAATTCCACGGACCGTCGCCATGAGCATCAGCAAGTA
CACGTGAACACGCAATTTTAAGTGTTTAGTTTTAAACGCAGTGGAAGACC
CAAAAAATCCAAGAGATGTTTTTTT
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protein sequence of rna3999

>rna3999-protein ID=rna3999-protein|Name=rna3999|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI
ELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK
QWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLET
SAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASS
GCC
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mRNA from alignment at CM002462.1:597085..599371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3999 ID=rna3999|Name=rna3999|organism=Nannochloropsis gaditana|type=mRNA|length=2287bp|location=Sequence derived from alignment at CM002462.1:597085..599371- (Nannochloropsis gaditana)
TACCACCCTTTTAATTGATTTTGGAGGCCGGACCGGGGCTTAGATATGCC GGTCTATTACTCCTTTGACCCTTTCTTGTTTCTAGGCAGCAATTGGACGC GCAGTGCGCGCTTGCGTGTGGCTTGGGGGGACGCACGCTGTGCGATATTC TTCCTGTTCCTGAGGCTTCTTCGTTCGCCAGATTGGTTTTGGAATCACCT GTCCACGCGCACGCAAGTCTTGGCGCTTAGTAACGTGAGAAGCCGTTCTT TTTTAGGAGCTGTCGGACAGGATGGTCGAACAGACTGGTGTGGGAAATCT TTTGCGGGAGTGTTGCGGGTGACCGCTGGCCGCTTTCCCTTGATGCCGTC AAAAGGCTCGACTCCTTCTGTTTGATAGCTTGTCGCAACTTGTTGCTTTT TCAACCCATCATTACTACACTTGCTCTTCGACAGGCATCAAGACGTTTGA ATATCTCAAGTCCGGGTTTATCTTTCAAGGATGAATGCAGAATAGTAAGT TTCTGGATCCTCCTTTCCTCTACCTGCCAGCCTGGTTTCGAAACGCGTGC AGGCGATACCCACTGATTGCTCCCATGTCTATACCTCACAGCGATTATCT TTTCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTC TGTTGCGATTTGCGGACGATACTTACACGGAAAGTTACATCTCCACGATC GGTGTCGACTTTGTAAGTAGTGACGTCCTTCACACCAGATGGTTCAAGTG GCCAATGCCGGTTGAGACATGTCTGCATCTCTACGTCTGCTCACTTGCTG ATACGGTCTCCTGATGACCAAGACGAACCCAAATCAAAGTCTTTTGCCGA CTAATAAGTCGCGTCGTCCGGATCCACTTCCTCTCTCACATTCTCTATAT CTCACGCTTGTAGAAAATTCGTACAATTGAATTGGAAGGCAAGACCATTA AACTGCAAATCGTAAGTGAGCAAAGATCAGGCTGAAAGTGTGCGCTGTAG ACGCGTACGACGGGAAAGGTCTGGGACGTGGATAGAGCAAGCACAATATC TGGATTGTCACCTCCTCAATCGGTTTGGGTCCGAGTTGCCTGTGCGGCGC CTGGGTTGAGGGTTTGGGTATCACACTGTCAGTACCGTGCGATGTCGTCC TGATCTTCCGCCATTACACACATCCATCTTGCTCCACAACCGACAGTGGG ACACGGCGGGACAGGAGCGATTCCGCACGATCACATCCTCGTACTACAGA GGAGCCCACGGCATCATCGTCGTATACGACGTGACTGACCAGGTGAGTCC AGGGATATCTCCCGGCCGCACATTCGTCTGTGACTTTTCGTTGGGGTCCC CTGCCAGCCCGAGTGACACTGTTTTCGGCCGGCCTCAGGTTCTCTTGAGC TGTAACCCCGACTGTAGGCGCCACTGTTCGCGCCCACGTCCTTGCTCTTC TCACCTCATGAATTCTTCGCCTATTGGCGGCCCGCTTTGCACAGGAGTCT TTCAACAATGTCAAGCAATGGCTGCACGAGATCAACCGATACGCCTCTGA GAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGCCGAAGC GTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTGGGCATC GCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAAAGCTTT CTTGACCATGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGCCGGTCG GTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTCGGGGGC CCTGGCGCGTCCTCTGGCTGCTGTTAACAATTGCAAGGTGTGGAATGTGG GGACAGGAGAGAAAGAATGAGGTGCATGTCACTCGTCGGGGAATGGCTTC TGGAAGAGAGGGGATAATCCTGCCGCAGAGACATACCTGCCGTTCGGGAC CCCTTTGGTTTTGTGTTCCGACAAAGTTCTCCGCGTGGTGATGCTGGGTT GCATGGGGAGTTCAGAAAGGTTCTCGCAACCGGCACAGTTTCCTGAGGGG CACGTACACTTGTAAAAAGAGCTGAGGCACAATTCAGATGGCATGAACGG AAGAATTACGCTTGGAGGAAGGTGTGGAATGTGAGAAGGGAGAACGGCTT GTCTAGGTAGCGAAGAAATATCAGAGCGCATGCTTCTTGGCCCCAGGCCG GCGTCGAAGGGTAACGGGACGTGGTGGAAATTGAAAACTAGGTCATGAAA AATAAAAAAAGGAAAAAAAGACACTGTCTACTTTATC
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Coding sequence (CDS) from alignment at CM002462.1:597085..599371-

>rna3999 ID=rna3999|Name=rna3999|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at CM002462.1:597085..599371- (Nannochloropsis gaditana)
GAGTCTTTCAACAATGTCAAGCAATGGCTGCACGAGATCAACCGATACGC
CTCTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGC
CGAAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTG
GGCATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAA
AGCTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGC
CGGTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTC
GGGGGCCCTGGCGCGTCCTCTGGCTGCTGTTAATGGGACACGGCGGGACA
GGAGCGATTCCGCACGATCACATCCTCGTACTACAGAGGAGCCCACGGCA
TCATCGTCGTATACGACGTGACTGACCAGAAAATTCGTACAATTGAATTG
GAAGGCAAGACCATTAAACTGCAAATCCGATTATCTTTTCAAGCTCTTGC
TAATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTCTGTTGCGATTTGCG
GACGATACTTACACGGAAAGTTACATCTCCACGATCGGTGTCGACTTTAT
GAATGCAGAATAGAGTCTTTCAACAATGTCAAGCAATGGCTGCACGAGAT
CAACCGATACGCCTCTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGA
GCGACTTGGAGCCGAAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTT
GCGGACTCGCTGGGCATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCAC
CAATGTGGAGAAAGCTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGA
TGAAGACCCAGCCGGTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCG
TCCACAGCCGTCGGGGGCCCTGGCGCGTCCTCTGGCTGCTGTTAATGGGA
CACGGCGGGACAGGAGCGATTCCGCACGATCACATCCTCGTACTACAGAG
GAGCCCACGGCATCATCGTCGTATACGACGTGACTGACCAGAAAATTCGT
ACAATTGAATTGGAAGGCAAGACCATTAAACTGCAAATCCGATTATCTTT
TCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTCTG
TTGCGATTTGCGGACGATACTTACACGGAAAGTTACATCTCCACGATCGG
TGTCGACTTTATGAATGCAGAATAGAGTCTTTCAACAATGTCAAGCAATG
GCTGCACGAGATCAACCGATACGCCTCTGAGAATGTGAACAAGCTGCTGG
TGGGGAACAAGAGCGACTTGGAGCCGAAGCGTGTGGTATCGACGGAAACG
GCCAAAGAGTTTGCGGACTCGCTGGGCATCGCCTTCTTGGAGACCTCGGC
GAAGAACTCCACCAATGTGGAGAAAGCTTTCTTGACCATGGCCTCGCAGA
TCAAGGCACGGATGAAGACCCAGCCGGTCGGTCCCAAAACCGGCGGGACG
AAGCTCACAGCGTCCACAGCCGTCGGGGGCCCTGGCGCGTCCTCTGGCTG
CTGTTAATGGGACACGGCGGGACAGGAGCGATTCCGCACGATCACATCCT
CGTACTACAGAGGAGCCCACGGCATCATCGTCGTATACGACGTGACTGAC
CAGAAAATTCGTACAATTGAATTGGAAGGCAAGACCATTAAACTGCAAAT
CCGATTATCTTTTCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAG
TCGTGCCTTCTGTTGCGATTTGCGGACGATACTTACACGGAAAGTTACAT
CTCCACGATCGGTGTCGACTTTATGAATGCAGAATAGAGTCTTTCAACAA
TGTCAAGCAATGGCTGCACGAGATCAACCGATACGCCTCTGAGAATGTGA
ACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGCCGAAGCGTGTGGTA
TCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTGGGCATCGCCTTCTT
GGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAAAGCTTTCTTGACCA
TGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGCCGGTCGGTCCCAAA
ACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTCGGGGGCCCTGGCGC
GTCCTCTGGCTGCTGTTAATGGGACACGGCGGGACAGGAGCGATTCCGCA
CGATCACATCCTCGTACTACAGAGGAGCCCACGGCATCATCGTCGTATAC
GACGTGACTGACCAGAAAATTCGTACAATTGAATTGGAAGGCAAGACCAT
TAAACTGCAAATCCGATTATCTTTTCAAGCTCTTGCTAATTGGAGACTCT
GGGGTTGGGAAGTCGTGCCTTCTGTTGCGATTTGCGGACGATACTTACAC
GGAAAGTTACATCTCCACGATCGGTGTCGACTTTATGAATGCAGAATAGA
GTCTTTCAACAATGTCAAGCAATGGCTGCACGAGATCAACCGATACGCCT
CTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGCCG
AAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTGGG
CATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAAAG
CTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGCCG
GTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTCGG
GGGCCCTGGCGCGTCCTCTGGCTGCTGTTAATGGGACACGGCGGGACAGG
AGCGATTCCGCACGATCACATCCTCGTACTACAGAGGAGCCCACGGCATC
ATCGTCGTATACGACGTGACTGACCAGAAAATTCGTACAATTGAATTGGA
AGGCAAGACCATTAAACTGCAAATCCGATTATCTTTTCAAGCTCTTGCTA
ATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTCTGTTGCGATTTGCGGA
CGATACTTACACGGAAAGTTACATCTCCACGATCGGTGTCGACTTTATGA
ATGCAGAATA
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Synonyms
Publications