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Properties
Property Name | Value |
Product | rab family gtpase |
Orig transcript id | gnl|cribi|Naga_100001g119.8104.mrna |
Orig protein id | gnl|cribi|Naga_100001g119.8104 |
Gene | Rab1B |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002462.1 | supercontig | CM002462.1:597085..599371 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3999 ID=rna3999|Name=rna3999|organism=Nannochloropsis gaditana|type=mRNA|length=3575bp ATCTTTGGGGCTATTTTCGAACAGGAGGCGAAGCTACAATCTCCACAGGA CTTTTCGTGAGGCTTCTCTGCACTTCAGAAGGACGGATATTTCGACACAG AGGTGTCCTAATCGCAATCTTTTCACCGTGAAATCAGGAGTGTTACCAAG GATCTAAATTTATCATGAGCATCGGTGGAACGGCAGAGGATGTAAATGGT CTTCATGAAGGAGTGGCTGACTTGAGCATCGAAACAGCTTGGTCCGCACG GCGCGTCCGACAAACGTTCATCGACTACTTTACTAACAAGAGGGAACACG TATTCTGGCCCTCCAGCCCGGTGGTGCCGCATGATGACCCCACCCTGCTC TTCGCCAACGCCGGCATGAATCAGTACAAGCCCCTCTTCCTCGGCATCGT AGATCCCAAGCTACCCTTGTCCAAGCTGACGCGGGCAGTGAACAGTCAGA AATGCATCCGAGCGGGCGGGAAGCATAATGATCTTGAGGACGTGGGGAAG GATACGTACCACCACACATTTTTCGAGATGCTGGGCAATTGGAGCTTCGG GTCCTACTTTAAAGAGGAGGCGATCGCCTGGGCCTGGGACTGTCTGGTCA ATGAATTCGGGCTAGACCCTTCGCGTCTCTACGCCACCTACTTCGGGGGC AACGAGAAGCAAGGGCTGACCGCTGACGAGGAGGCGCGCAATATCTGGCT GCGGTATCTGCCTCCCAACCGCGTGCTCCCATTCGATTGCAAGGACAATT TCTGGGAGATGGGCGAGACGGGCCCCTGCGGCCCCTGCACGGAGATCCAT TACGACCGACTCCCTGCGCGGGAGGTGCCTGAACTGGTAAACATGGACTC ACCCGATCTGATCGAGATCTGGAACGTTGTCTTCATACAGTACAATCGCG AGGAAGGTGGGGCTCTGCGGGAGCTGCCGTCCAAGCACGTGGACACAGGC ATGGGATTCGAGCGCCTGACCTCCATTTTGCAAGACAAACCCTCTAACTA CGACACAGACATCTTTATGCCCCTTTTCGACGCCATCCAGGAGCTGACAG GAGCGCCTCCCTACGCAGGGAAGCTGGGAAAGGCCGATCCCGAGAGCAGG GACATGGCCTACCGTGTGGTCGCCGACCACATCCGCACCCTGACCTTTGC CATTGCGGACGGGGCCGTCCCCTCCAACGACGGCCGCGGTTATGTGCTGC GCCGTATCCTACGGCGAGCCGTCCGGTACGGAGCAAAAGTGCTGGGTGCC GCCCCGGGCTTCTTCTCGAAACTGGTGCACGTGGTGGTGAACCAGATGAA AGATATCTTTCCGGAGCTGGAGGAGAAGGAGAAAAGGGTCGTGGAGGTGC TCGCAGACGAGGAGCGAGCCTTTAATCGTACGCTGGATCAGGGGGAGAAG CATTTCAAGAAAGTGGCGGACGAGCTCCTGCTTGCGGCCAGTCAGCGGGG GGGGGACAAAGGGGAGAAAGTGGCTTTCCCGGCCAAGGAGGCTCACTACC TGTACTCGACGATGGGCTTTCCCGTAGATTTGACTGAATTGATGGCGGAG GAAAAGGGTCTCACCGTGGACAGAGCGGGTTTCGAAACCTTGCTGGCAGA GGACAAGCGGCAGAGCGCTATGGCAGCCGCGGCCAAGAAGGAGATGGGGG GAAAGGAGATTGTGCTGGAGGCAGAGCAGACGGCTTGGCTGCAGTCGCGC GGGGTGGAGATAACAGATTCAAGCCTCAAGTACGTGTGGCACCACGAGCC ATCGGCGCGGGTGATGGCGCTGTACAAGGGCAAGGCTGTCGGTTTCGTGG AGGAGGTGACGGCCGAAGACGGCGTGGTGGCGGTGATCCTCAACACCACA TCCTTTTATGCGGAACAAGGCGGGCAAATTCACGACACGGGTGTCATAAC TAATCTGGACGGCACGGATACGCTGCGAGTGGATTCCGTACAAAGTTATG GCGGCTACGTCCTGCACATAGGACCCTTGGAATCGGGCGCGCTGCGGGTC GGGGATACGGCCACCTGCATGGTGGACTACGAGCGTCGAGCCCGGATCGC TCCCAATCACACGATGACTCATGTTTTGAACTACGCGCTGCGGCGCGTCC TTTTGAAAGGCGTCTCGGACGGATCAGGACTCTGCGATCAGAAGGGTTCG GCTGTGGACGACGAGAAACTACGCTTCGATTTTGCCTGGAACAAGGCGCT GACAAAGGAGGAGCTGGCCGAGGTGGAGACGATAGTGCGAGAACGTATAA GCCAAGAACTACCTGTCCATTCGTACATCGCTCCCTTGGAGAAGGCCCTT CATATCAACTCGCTCCGGCAGGTGTTCGGAGAGCGCTATCCGGACCCCGT GCGCGTCCTGAGCGTCGGACATGAAGTGCCCCCAATGCTTGAGGACCCGA CCAACCCTGCTTGGCAAGATACGTCGGTGGAATTCTGCGGTGGGACACAT CTCAGCAACACACGAGAGGCGGAGCGTTTCGCACTCATAGAGGAGACCGG TATCGCTAAGGGCATCCGCCGGATTACAGCCGTGACTAAGGACATGGCCC GGGCGGCAGAGGAGCTGGCGGAAGAATTTGCTGGTCTGCTGGCATTGGCA GAGGTCAAACCGGAGGAAGAACTTGAGGGGGAGGTCAAGATGCTTAATAC ACGTCTGGGTCCTCTTACCATCTCCGCGGTAGAGAAAGAGCGTTTTCGGA CGGCGCTCGATGCTTTGCTGACCCGGGTGAAGAAATTTAAAAAGGAAAAA GTGGCCCGGAGCCGAGATATCGCCTTAAGTCGTGTGACTGAGATCGCGAC TGAGGCCGCAGCATCAGGAAGGTCAGTAGTAATCGAGCGTCTGGATTTTG GGACGGACGGCAAGATTGCCAAGGAGGCTCTCGACAAGGCCTCTCAAATC CATCCCAGTGGCTGTTTCCTTTTGATCAGCGCCGACGAGGACAGTGGGAA ATTCGGCGTTTACTCAACTGCCCCCAAATTGGGCTCGCCCCTGGATCCTA TCGCCTGGGTCGCTGCCGCTGTCGAAGGGGCGGGAGGCGGTCGAAGTGGA GGAAAATCTCCTCGCGGGCAAGGGGTGGGAGAAGGGTTGGAAAAGATCGG TTCTGCGGTGACAGCTGCCAAAGCTTTTGCAGGGGTGTGAGCTATAATGT ACTTTTTTGACGGAAGGGCAGGAAGGGATCCAATGAAAAACAATGAGAAG GCGATTAAACGCGACATGAGTGGCCGCTGTAAGGTGTTGGTGCCTCGCTT CTTCCGAAGGACACAGCAAAGCACATTTTGTACCTGTACCAATCAAAAAA GTGAAACATCGGGCGAAAGGCTTGAGAAGAAGACACCGAGTACTCGTGGA AAGCGGAGTTCAGGTCTGCATGGCACAAAGGATGTGATATGGGAACTATC GGGAAAAGATAGAAGGAAAGCTGTCCTTAAGCCGTCCGATAGAATCACGT TTTTGAAAAGAGATAATTCCACGGACCGTCGCCATGAGCATCAGCAAGTA CACGTGAACACGCAATTTTAAGTGTTTAGTTTTAAACGCAGTGGAAGACC CAAAAAATCCAAGAGATGTTTTTTT back to topprotein sequence of rna3999 >rna3999-protein ID=rna3999-protein|Name=rna3999|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp MNAEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTI ELEGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK QWLHEINRYASENVNKLLVGNKSDLEPKRVVSTETAKEFADSLGIAFLET SAKNSTNVEKAFLTMASQIKARMKTQPVGPKTGGTKLTASTAVGGPGASS GCC back to topmRNA from alignment at CM002462.1:597085..599371- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3999 ID=rna3999|Name=rna3999|organism=Nannochloropsis gaditana|type=mRNA|length=2287bp|location=Sequence derived from alignment at CM002462.1:597085..599371- (Nannochloropsis gaditana) TACCACCCTTTTAATTGATTTTGGAGGCCGGACCGGGGCTTAGATATGCC
GGTCTATTACTCCTTTGACCCTTTCTTGTTTCTAGGCAGCAATTGGACGC
GCAGTGCGCGCTTGCGTGTGGCTTGGGGGGACGCACGCTGTGCGATATTC
TTCCTGTTCCTGAGGCTTCTTCGTTCGCCAGATTGGTTTTGGAATCACCT
GTCCACGCGCACGCAAGTCTTGGCGCTTAGTAACGTGAGAAGCCGTTCTT
TTTTAGGAGCTGTCGGACAGGATGGTCGAACAGACTGGTGTGGGAAATCT
TTTGCGGGAGTGTTGCGGGTGACCGCTGGCCGCTTTCCCTTGATGCCGTC
AAAAGGCTCGACTCCTTCTGTTTGATAGCTTGTCGCAACTTGTTGCTTTT
TCAACCCATCATTACTACACTTGCTCTTCGACAGGCATCAAGACGTTTGA
ATATCTCAAGTCCGGGTTTATCTTTCAAGGATGAATGCAGAATAGTAAGT
TTCTGGATCCTCCTTTCCTCTACCTGCCAGCCTGGTTTCGAAACGCGTGC
AGGCGATACCCACTGATTGCTCCCATGTCTATACCTCACAGCGATTATCT
TTTCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTC
TGTTGCGATTTGCGGACGATACTTACACGGAAAGTTACATCTCCACGATC
GGTGTCGACTTTGTAAGTAGTGACGTCCTTCACACCAGATGGTTCAAGTG
GCCAATGCCGGTTGAGACATGTCTGCATCTCTACGTCTGCTCACTTGCTG
ATACGGTCTCCTGATGACCAAGACGAACCCAAATCAAAGTCTTTTGCCGA
CTAATAAGTCGCGTCGTCCGGATCCACTTCCTCTCTCACATTCTCTATAT
CTCACGCTTGTAGAAAATTCGTACAATTGAATTGGAAGGCAAGACCATTA
AACTGCAAATCGTAAGTGAGCAAAGATCAGGCTGAAAGTGTGCGCTGTAG
ACGCGTACGACGGGAAAGGTCTGGGACGTGGATAGAGCAAGCACAATATC
TGGATTGTCACCTCCTCAATCGGTTTGGGTCCGAGTTGCCTGTGCGGCGC
CTGGGTTGAGGGTTTGGGTATCACACTGTCAGTACCGTGCGATGTCGTCC
TGATCTTCCGCCATTACACACATCCATCTTGCTCCACAACCGACAGTGGG
ACACGGCGGGACAGGAGCGATTCCGCACGATCACATCCTCGTACTACAGA
GGAGCCCACGGCATCATCGTCGTATACGACGTGACTGACCAGGTGAGTCC
AGGGATATCTCCCGGCCGCACATTCGTCTGTGACTTTTCGTTGGGGTCCC
CTGCCAGCCCGAGTGACACTGTTTTCGGCCGGCCTCAGGTTCTCTTGAGC
TGTAACCCCGACTGTAGGCGCCACTGTTCGCGCCCACGTCCTTGCTCTTC
TCACCTCATGAATTCTTCGCCTATTGGCGGCCCGCTTTGCACAGGAGTCT
TTCAACAATGTCAAGCAATGGCTGCACGAGATCAACCGATACGCCTCTGA
GAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGCCGAAGC
GTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTGGGCATC
GCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAAAGCTTT
CTTGACCATGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGCCGGTCG
GTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTCGGGGGC
CCTGGCGCGTCCTCTGGCTGCTGTTAACAATTGCAAGGTGTGGAATGTGG
GGACAGGAGAGAAAGAATGAGGTGCATGTCACTCGTCGGGGAATGGCTTC
TGGAAGAGAGGGGATAATCCTGCCGCAGAGACATACCTGCCGTTCGGGAC
CCCTTTGGTTTTGTGTTCCGACAAAGTTCTCCGCGTGGTGATGCTGGGTT
GCATGGGGAGTTCAGAAAGGTTCTCGCAACCGGCACAGTTTCCTGAGGGG
CACGTACACTTGTAAAAAGAGCTGAGGCACAATTCAGATGGCATGAACGG
AAGAATTACGCTTGGAGGAAGGTGTGGAATGTGAGAAGGGAGAACGGCTT
GTCTAGGTAGCGAAGAAATATCAGAGCGCATGCTTCTTGGCCCCAGGCCG
GCGTCGAAGGGTAACGGGACGTGGTGGAAATTGAAAACTAGGTCATGAAA
AATAAAAAAAGGAAAAAAAGACACTGTCTACTTTATC back to topCoding sequence (CDS) from alignment at CM002462.1:597085..599371- >rna3999 ID=rna3999|Name=rna3999|organism=Nannochloropsis gaditana|type=CDS|length=3060bp|location=Sequence derived from alignment at CM002462.1:597085..599371- (Nannochloropsis gaditana) GAGTCTTTCAACAATGTCAAGCAATGGCTGCACGAGATCAACCGATACGC CTCTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGC CGAAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTG GGCATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAA AGCTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGC CGGTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTC GGGGGCCCTGGCGCGTCCTCTGGCTGCTGTTAATGGGACACGGCGGGACA GGAGCGATTCCGCACGATCACATCCTCGTACTACAGAGGAGCCCACGGCA TCATCGTCGTATACGACGTGACTGACCAGAAAATTCGTACAATTGAATTG GAAGGCAAGACCATTAAACTGCAAATCCGATTATCTTTTCAAGCTCTTGC TAATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTCTGTTGCGATTTGCG GACGATACTTACACGGAAAGTTACATCTCCACGATCGGTGTCGACTTTAT GAATGCAGAATAGAGTCTTTCAACAATGTCAAGCAATGGCTGCACGAGAT CAACCGATACGCCTCTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGA GCGACTTGGAGCCGAAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTT GCGGACTCGCTGGGCATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCAC CAATGTGGAGAAAGCTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGA TGAAGACCCAGCCGGTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCG TCCACAGCCGTCGGGGGCCCTGGCGCGTCCTCTGGCTGCTGTTAATGGGA CACGGCGGGACAGGAGCGATTCCGCACGATCACATCCTCGTACTACAGAG GAGCCCACGGCATCATCGTCGTATACGACGTGACTGACCAGAAAATTCGT ACAATTGAATTGGAAGGCAAGACCATTAAACTGCAAATCCGATTATCTTT TCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTCTG TTGCGATTTGCGGACGATACTTACACGGAAAGTTACATCTCCACGATCGG TGTCGACTTTATGAATGCAGAATAGAGTCTTTCAACAATGTCAAGCAATG GCTGCACGAGATCAACCGATACGCCTCTGAGAATGTGAACAAGCTGCTGG TGGGGAACAAGAGCGACTTGGAGCCGAAGCGTGTGGTATCGACGGAAACG GCCAAAGAGTTTGCGGACTCGCTGGGCATCGCCTTCTTGGAGACCTCGGC GAAGAACTCCACCAATGTGGAGAAAGCTTTCTTGACCATGGCCTCGCAGA TCAAGGCACGGATGAAGACCCAGCCGGTCGGTCCCAAAACCGGCGGGACG AAGCTCACAGCGTCCACAGCCGTCGGGGGCCCTGGCGCGTCCTCTGGCTG CTGTTAATGGGACACGGCGGGACAGGAGCGATTCCGCACGATCACATCCT CGTACTACAGAGGAGCCCACGGCATCATCGTCGTATACGACGTGACTGAC CAGAAAATTCGTACAATTGAATTGGAAGGCAAGACCATTAAACTGCAAAT CCGATTATCTTTTCAAGCTCTTGCTAATTGGAGACTCTGGGGTTGGGAAG TCGTGCCTTCTGTTGCGATTTGCGGACGATACTTACACGGAAAGTTACAT CTCCACGATCGGTGTCGACTTTATGAATGCAGAATAGAGTCTTTCAACAA TGTCAAGCAATGGCTGCACGAGATCAACCGATACGCCTCTGAGAATGTGA ACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGCCGAAGCGTGTGGTA TCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTGGGCATCGCCTTCTT GGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAAAGCTTTCTTGACCA TGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGCCGGTCGGTCCCAAA ACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTCGGGGGCCCTGGCGC GTCCTCTGGCTGCTGTTAATGGGACACGGCGGGACAGGAGCGATTCCGCA CGATCACATCCTCGTACTACAGAGGAGCCCACGGCATCATCGTCGTATAC GACGTGACTGACCAGAAAATTCGTACAATTGAATTGGAAGGCAAGACCAT TAAACTGCAAATCCGATTATCTTTTCAAGCTCTTGCTAATTGGAGACTCT GGGGTTGGGAAGTCGTGCCTTCTGTTGCGATTTGCGGACGATACTTACAC GGAAAGTTACATCTCCACGATCGGTGTCGACTTTATGAATGCAGAATAGA GTCTTTCAACAATGTCAAGCAATGGCTGCACGAGATCAACCGATACGCCT CTGAGAATGTGAACAAGCTGCTGGTGGGGAACAAGAGCGACTTGGAGCCG AAGCGTGTGGTATCGACGGAAACGGCCAAAGAGTTTGCGGACTCGCTGGG CATCGCCTTCTTGGAGACCTCGGCGAAGAACTCCACCAATGTGGAGAAAG CTTTCTTGACCATGGCCTCGCAGATCAAGGCACGGATGAAGACCCAGCCG GTCGGTCCCAAAACCGGCGGGACGAAGCTCACAGCGTCCACAGCCGTCGG GGGCCCTGGCGCGTCCTCTGGCTGCTGTTAATGGGACACGGCGGGACAGG AGCGATTCCGCACGATCACATCCTCGTACTACAGAGGAGCCCACGGCATC ATCGTCGTATACGACGTGACTGACCAGAAAATTCGTACAATTGAATTGGA AGGCAAGACCATTAAACTGCAAATCCGATTATCTTTTCAAGCTCTTGCTA ATTGGAGACTCTGGGGTTGGGAAGTCGTGCCTTCTGTTGCGATTTGCGGA CGATACTTACACGGAAAGTTACATCTCCACGATCGGTGTCGACTTTATGA ATGCAGAATA back to top
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