rna3992, rna3992 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3992
Unique Name	rna3992
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1481
Alignment location	CM002462.1:574371..577692 +

Link to JBrowse

Properties


Property Name	Value
Product	transketolase
Orig transcript id	gnl\|cribi\|Naga_100001g128.8118.mrna
Orig protein id	gnl\|cribi\|Naga_100001g128.8118
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:574371..577692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g128	gene3840	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3992	rna3992-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26607.1	cds3982	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:574371..577692+
coding sequence from alignment at CM002462.1:574371..577692+

mRNA sequence

>rna3992 ID=rna3992|Name=rna3992|organism=Nannochloropsis gaditana|type=mRNA|length=1481bp
GCAGGGCATGCTGATGGACGCCTGAATGTGTTGCCACGTGCGTCCGATAA
GAGATTTGTGTCTATTATTTCTTGTTCACGATTTTTGCTGCCCGCAGACT
CGCGCGCTTATATTCTTACACGCTCTAAGCACAGGATACGCCGGTCTATT
CTTTCCCAGCTTGTCTTTCCTGGTGGGTGTCCTCCGGCCGTCATCGGGGT
CAGGACTGTTAAGTCATGGAGGGGTTGGAGGAGTATCCGCACCCAAATGC
GGCGCCAAGCACGGTGGGCAGCAACAAGGGGGGCCCTGTGGAGTTCAGGA
GGAGCAGTCAGCGGACGTTGCTGCATCACTGGGAGCGACTCGAAAGGGAA
TACTTCAGGCCCGCGACCATGCAAGACATCATAACCCTTCATGTTCAGCT
CAAGAGCGTGCAACAAACCCTGGAGGAGGCGGAAGCGCCCTGTCTCTACC
GGAAGCGTCTTGAAAGCAGCTGCGACGAAACCTTTCCTTCCAGGAGTATG
GCTTACTTAGATAAGAGACAGCTATCAAATAAAGCTTCGCGACGAGAATT
GTTAATGAGTGGGGTCGAGGATGTTTTGGTGACGAAATCAGGATACAGCC
GAAAACGCTTGCCGTCATACGCACACCTATCACAAGGACCGCCCTCTGAC
AGCTCAGCATCCACATCTCATTGCTCTTTTAGCGACAAGGAGACAAAATT
CAAAAGGATGAATTTACGAGGAAGCGAACAGGAGGTTGGCGCCAATGTCA
GAAACCTTTCAAGGCAACAGGAAAGCGATAGCAAAAACCAGACCGCGCGC
CTCAAGCCGAAGGATCGACGACGAGCAGAGACGCTAGAGGAGGGCGATTC
CGCCGGGATGGAGGATGAGGATGACGAGTTCGAGACACGCTCGGCTTTTT
CTCGAGACGATGAGGACGATCAAGAGGAGCAGGAGGCAGGGGGGGAGGAA
AGGTCTCAGGAGGGAGAGATGGACGTCTTTTCCGAGGAAGGCGGGGGGTC
CACGGAGGGAAGTGGGGAGGAGGAAGACGTCGACTTTGTCCGTGAAATAA
GCCAGCTTAGTCAGCGCAATAGAGAGCTTCATAAAATATTGGAAGGGGAA
GTTTTGAAACTTTCACGCTACGCGCGCCTGGAGTGTACGGCTGCTTTAGC
CACCTCTTGCAAGGTCAAGGTTGATGGTTGGAACACCGGCTGCGCAGAAA
GTGCGGGTAGTGATGGTGAACACGGTATTTGCAGTGCGCTATACGGCCAT
GGAATTCATAGTCAGCTTCAAAGGCGTTCGCACGAACATGAGGAGATGAC
GCAACAAATGAGAAATGTGCTGCGGGGAGGCAGCATGTGGCACACGGACG
ATGCCACATGCGAGCTGTACCGTCAGCTGTATAGGTAGCGATTGATTCAT
TGTGACATAGCTGTGTGGATAGATGACCAAACGATTGATGTATACAAAGT
GAACATTGACTGAAGCACCCGTCAAGACCGC

protein sequence of rna3992

>rna3992-protein ID=rna3992-protein|Name=rna3992|organism=Nannochloropsis gaditana|type=polypeptide|length=722bp
MVAKAAFAGVAAMGVLGAHAFIPTPVSLSRVLGQRGSARSGPVMMATVAP
EKVTATPADLNRAANEARGLALDSITAAHSGHLGLPLGAADIGAVLWGKL
LQHNPQDPQWINRDRFILSAGHGSMFIYSWLHLSGYALPLEEVKKFRQHH
SMTPGHPEFPSSEHNTPGIESTTGPLGQGVSNAVGMAAAQKHAAASYNTP
QHTIFNSHIITLAGDGCIQEGVAAESAAFAAHEKLDNLIVLYDANDVTLD
AMADRTQSEDVAMRYKAYGWDVVTIDGHDLVAIEKAISDAKATDNGKPKM
IICKTIIGKGIDEIAGTNAAHGEAGVKYCDDSRKRLGLPDEKWYVSPETR
SFFANRQSELKSEYDAWQKTFAEWKAANPDKAKLLADAVEKKVPSAEELM
KAIPEFDPSKNIATREAGSIVLQSVAAAVPNYLTGSADLFGSTKNYIKNG
GDFGNGEGKTYSGRNILYGIREHAMGSILNGFAYFGLHRVSGATFLVFAD
YMRAPVRVAALSELPVGYIWTHDSIGVGEDGPTHQPVETVSGLRVFPNVD
VIRPADSEETAGAFVSSIVRKDGPTALILTRQNVNQLPGSAQEKRAGVLK
GAYIIKKESGPLKAIIMASGSEVQHAVAAAESLGDGIRVVSMPCMEIFDR
QTPAYKESILPAACRKRIAMEAGVTGLWYKYVGLDGKVIGVDRFGFSAPG
PIVMKELGMSADNLVEQAKSYI

mRNA from alignment at CM002462.1:574371..577692+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3992 ID=rna3992|Name=rna3992|organism=Nannochloropsis gaditana|type=mRNA|length=3322bp|location=Sequence derived from alignment at CM002462.1:574371..577692+ (Nannochloropsis gaditana)
ACGGCGACATGGATCCTCGACCTCACGCTGTTGTTCTGCCTCTCACGGCA
GGGCCACATTATCTGAACTACGAGTGCAACCTTGTGATTCCAAGGCACGT
TTTTGAGGCCATTCGAACCCCAGTTTTGGGTCGGAGGGACGGCAGCCAAG
AGGTTGGACAGTGGCTACTCGGCGTATCGTCGCGCGAGCTAAAATCTTGA
TTCCCTCCCTAGCTTCAGTAACGCATCACTTTGTCCCATGGCTGAACGTT
TGGAGTTAATTAAATCTTAAAAGGCTTTGTTGATGTAAGCCTAGGAGAGC
TACGTCGTCCCTCGGGTCCCAACATGTGTTGTTTGTGCGTGTGAATCGGA
GGTTCCTGAAGATCCTCGCGACCTCAGCACAATCTTCGCTGTGGGCTACA
AATACAAGTTTATGTACAGGTTTTAAACGTAGCTCTTGACTCCACTCTTT
ACAACTACAGTGAAGATGGTTGCCAAAGCTGCTTTCGCCGGCGTTGCCGC
CATGGGTGTACTAGGCGCTCACGCCTTCATCCCCACCCCCGTGAGCCTGA
GCAGGGTGCTCGGACAGCGTGGCTCTGCTCGCTCTGGCCCCGTCATGATG
GCTACCGTGGCGCCTGAGAAAGTGACCGCGACTCCTGCAGACTTGAACCG
TGCCGCCAACGAAGCCCGTGGTCTGGCCCTGGACTCCATCACTGCGGCAC
ACTCCGGCCACCTGGGTCTCCCCCTTGGGGCCGCGGACATCGGCGCCGTG
CTGTGGGGGAAGCTCCTCCAACACAACCCCCAGGACCCGCAGTGGATCAA
CCGCGATCGCTTCATTCTCTCTGCTGGCCACGGTTCCATGTTCATCTACT
CGTGGCTGCATTTGTCCGGATACGCGCTgcccctggaggaggtgaagaaa
tTCCGACAGCACCACTCGATGACGCCCGGGCACCCCGaattcccctcctc
cgagcACAACACGCCCGGTATTGAGAGCACTACTGGCCCTCTGGGCCAAG
GCGTGTCCAACGCAGTGGGTATGGCCGCTGCCCAGAAGCACGCTGCCGCA
AGCTACAACACTCCCCAGCACACCATCTTCAACAGCCACATTATCACCTT
GGCGGGCGACGGCTGCATCCAGGAGGGTGTGGCAGCCGAGTCGGCGGCTT
TTGCAGCCCATGAAAAGCTTGACAACCTGATTGTCCTCTACGACGCGAAC
GACGTGACGCTGGATGCCATGGCGGACCGCACCCAGTCCGAGGACGTGGC
CATGCGCTACAAAGCCTACGGCTGGGACGTGGTGACCATCGACGGGCACG
ACCTGGTGGCCATCGAGAAGGCGATCAGCGATGCTAAGGCCACCGACAAT
GGCAAGCCCAAGATGATTATCTGCAAGACCATCATCGGGAAGGGTATCGA
CGAGATCGCCGGCACCAACGCCGCCCACGGCGAGGCTGGTGTGAAGTACT
GCGACGACTCCCGCAAGCGCCTGGGCCTCCCTGACGAGAAGTGGTATGTC
TCCCCCGAGACCCGATCTTTCTTTGCCAACCGGCAGAGCGAGCTGAAGAG
CGAGTACGACGCCTGGCAGAAGACGTTCGCGGAGTGGAAGGCCGCCAACC
CCGACAAGGCGAAGCTGCTGGCCGATGCAGTGGAGAAGAAGGTTCcctcg
gcggaggagctaATGAAGGCCATTCCCGAGTTCGACCCCTCCAAGAATAT
CGCTACCCGCGAGGCCGGCTCCATTGTGCTCCAATCTGTGGCTGCCGCGG
TGCCCAACTACCTGACCGGCTCGGCCGATCTCTTCGGCTCCACCAAGAAC
TACATCAAGAACGGCGGGGACTTCGGGAACGGCGAGGGCAAGACCTATAG
TGGCCGAAACATCCTTTATGGCATCCGCGAGCACGCTATGGGCTCCATTC
TTAACGGCTTCGCGTACTTCGGCCTGCACCGCGTCTCCGGCGCTAccttc
cttgtcttcgcCGACTACATGCGTGCCCCTGTGCGTGTGGCCGCGCTCTC
CGAGCTGCCTGTCGGCTACATCTGGACACACGACTCTATCGGGGTGGGTG
AGGACGGACCGACCCACCAGCCCGTTGAGACCGTGTCTGGCCTTCGCGTC
TTCCCTAACGTGGACGTGATCCGCCCCGCCGACTCCGAGGAGACAGCCGg
cgccttcgtctcctccattgTCCGCAAGGACGGCCCCACGGCCCTCATCC
TGACCCGTCAGAACGTGAATCAGCTACCTGGCTCCgcgcaggagaagcga
gCCGGCGTGCTGAAGGGCGCCTACATCATCAAGAAGGAGAGTGGGCCGCT
CAAGGCCATCATCATGGCGTCCGGCTCGGAGGTGCAGCacgccgtggcgg
cggctgAGTCCTTGGGCGATGGGATCCGCGTCGTTTCCATGCCTTGCATG
GAGATTTTCGACCGCCAGACGCCCGCATACAAGGAGTCGATCCTTCCCGC
AGCCTGCCGCAAGCGCATTGCCATGGAAGCCGGTGTGACAGGCTTGTGGT
ACAAGTATGTGGGCCTGGACGGCAAGGTCATCGGCGTGGATCGCTTCGGC
TTTTCTGCCCCTGGCCCCATCGTCATGAAGGAGTTGGGCATGTCCGCTGA
TAACCTTGTGGAGCAGGCGAAGAGCTACATCTAAGCTTTAGCCGCCGCAG
GTCTCTTCGTGACGCGACGGATAGTAAGTGAGGAGCGGCCTTTTTTCTCG
ATGACCGGATCCTGGTCTTGGAAACCGAGAGGTGCATGTGAGGGGGCTGA
ATGTGACGAGCATTGAGGGGATGTCGTTCCCCTGTTGCGTAGAAGGCTTG
AGTATCCTGGAAAATGCACCTTGCACAGAGTGGTTGGCAGGGGATGAGAA
ACAAAAATACGGAACGTCAAGGATCCTGCGCTAGGAGCGCAGTTGTGACA
ATGGAAGCAGTTGCTGTGGGGTGCGCGTGTCGTGTCTTTGTGTCTTCAGT
GAAGTAAGGTGTCAAATGTGCATCGAGTGGTGTATGAGTGTCAGCCGATT
TGTGTGTTTCGACGCCAATGGATGTAGTTTCCGGATGTGCGGGCTCATCA
CTCTTAAATTTCAGGCAGAGGACGGTCACCACTGCGTCACAGAAAAAGAA
GTGAAAGGGTTACAGCAGCAGATACATCACTTGACGCGTTTGAAAGCAGT
CAGATTCTGACCTCGCAATTTGTTTGATCGTTGGCAATCTCTCATCTGCT
TCTCCTTAAGGAAACGGCACGGTCGAGAGGGCAGCAGTGGCAAGGCAATT
CTCGACTGTGTCCAGTCTGAGTGATTGCCACGAGCAGAAACATTGAAAAA
CGACTGGTGCAGCTACTAATCG

Coding sequence (CDS) from alignment at CM002462.1:574371..577692+

>rna3992 ID=rna3992|Name=rna3992|organism=Nannochloropsis gaditana|type=CDS|length=2169bp|location=Sequence derived from alignment at CM002462.1:574371..577692+ (Nannochloropsis gaditana)
ATGGTTGCCAAAGCTGCTTTCGCCGGCGTTGCCGCCATGGGTGTACTAGG
CGCTCACGCCTTCATCCCCACCCCCGTGAGCCTGAGCAGGGTGCTCGGAC
AGCGTGGCTCTGCTCGCTCTGGCCCCGTCATGATGGCTACCGTGGCGCCT
GAGAAAGTGACCGCGACTCCTGCAGACTTGAACCGTGCCGCCAACGAAGC
CCGTGGTCTGGCCCTGGACTCCATCACTGCGGCACACTCCGGCCACCTGG
GTCTCCCCCTTGGGGCCGCGGACATCGGCGCCGTGCTGTGGGGGAAGCTC
CTCCAACACAACCCCCAGGACCCGCAGTGGATCAACCGCGATCGCTTCAT
TCTCTCTGCTGGCCACGGTTCCATGTTCATCTACTCGTGGCTGCATTTGT
CCGGATACGCGCTgcccctggaggaggtgaagaaatTCCGACAGCACCAC
TCGATGACGCCCGGGCACCCCGaattcccctcctccgagcACAACACGCC
CGGTATTGAGAGCACTACTGGCCCTCTGGGCCAAGGCGTGTCCAACGCAG
TGGGTATGGCCGCTGCCCAGAAGCACGCTGCCGCAAGCTACAACACTCCC
CAGCACACCATCTTCAACAGCCACATTATCACCTTGGCGGGCGACGGCTG
CATCCAGGAGGGTGTGGCAGCCGAGTCGGCGGCTTTTGCAGCCCATGAAA
AGCTTGACAACCTGATTGTCCTCTACGACGCGAACGACGTGACGCTGGAT
GCCATGGCGGACCGCACCCAGTCCGAGGACGTGGCCATGCGCTACAAAGC
CTACGGCTGGGACGTGGTGACCATCGACGGGCACGACCTGGTGGCCATCG
AGAAGGCGATCAGCGATGCTAAGGCCACCGACAATGGCAAGCCCAAGATG
ATTATCTGCAAGACCATCATCGGGAAGGGTATCGACGAGATCGCCGGCAC
CAACGCCGCCCACGGCGAGGCTGGTGTGAAGTACTGCGACGACTCCCGCA
AGCGCCTGGGCCTCCCTGACGAGAAGTGGTATGTCTCCCCCGAGACCCGA
TCTTTCTTTGCCAACCGGCAGAGCGAGCTGAAGAGCGAGTACGACGCCTG
GCAGAAGACGTTCGCGGAGTGGAAGGCCGCCAACCCCGACAAGGCGAAGC
TGCTGGCCGATGCAGTGGAGAAGAAGGTTCcctcggcggaggagctaATG
AAGGCCATTCCCGAGTTCGACCCCTCCAAGAATATCGCTACCCGCGAGGC
CGGCTCCATTGTGCTCCAATCTGTGGCTGCCGCGGTGCCCAACTACCTGA
CCGGCTCGGCCGATCTCTTCGGCTCCACCAAGAACTACATCAAGAACGGC
GGGGACTTCGGGAACGGCGAGGGCAAGACCTATAGTGGCCGAAACATCCT
TTATGGCATCCGCGAGCACGCTATGGGCTCCATTCTTAACGGCTTCGCGT
ACTTCGGCCTGCACCGCGTCTCCGGCGCTAccttccttgtcttcgcCGAC
TACATGCGTGCCCCTGTGCGTGTGGCCGCGCTCTCCGAGCTGCCTGTCGG
CTACATCTGGACACACGACTCTATCGGGGTGGGTGAGGACGGACCGACCC
ACCAGCCCGTTGAGACCGTGTCTGGCCTTCGCGTCTTCCCTAACGTGGAC
GTGATCCGCCCCGCCGACTCCGAGGAGACAGCCGgcgccttcgtctcctc
cattgTCCGCAAGGACGGCCCCACGGCCCTCATCCTGACCCGTCAGAACG
TGAATCAGCTACCTGGCTCCgcgcaggagaagcgagCCGGCGTGCTGAAG
GGCGCCTACATCATCAAGAAGGAGAGTGGGCCGCTCAAGGCCATCATCAT
GGCGTCCGGCTCGGAGGTGCAGCacgccgtggcggcggctgAGTCCTTGG
GCGATGGGATCCGCGTCGTTTCCATGCCTTGCATGGAGATTTTCGACCGC
CAGACGCCCGCATACAAGGAGTCGATCCTTCCCGCAGCCTGCCGCAAGCG
CATTGCCATGGAAGCCGGTGTGACAGGCTTGTGGTACAAGTATGTGGGCC
TGGACGGCAAGGTCATCGGCGTGGATCGCTTCGGCTTTTCTGCCCCTGGC
CCCATCGTCATGAAGGAGTTGGGCATGTCCGCTGATAACCTTGTGGAGCA
GGCGAAGAGCTACATCTAA

Synonyms

Publications