rna3985, rna3985 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3985
Unique Name	rna3985
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2400
Alignment location	CM002462.1:561770..563084 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g135.8203.mrna
Orig protein id	gnl\|cribi\|Naga_100001g135.8203
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:561770..563084 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g135	gene3833	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26692.1	cds3975	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3985	rna3985-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:561770..563084-
coding sequence from alignment at CM002462.1:561770..563084-

mRNA sequence

>rna3985 ID=rna3985|Name=rna3985|organism=Nannochloropsis gaditana|type=mRNA|length=2400bp
ATGTCAGAAGTGCACGTGCCAGATACGGGGGATCTTCCTGGACTGGACAG
TCTCTTAGACGTGATTCTCGGACCCACCCTGGCCGAACTCTACGGCGCCG
ACATAGCCCTCCTCGAGCGCATCGAGTGCAAGCTGGGAATGGTATTGGAC
AGACATCATCCAGAGAAGGTGGAAGCTTTCAATGAGATGGTGAGTATGAC
AAAGTCACCAATGATCAAGGAGAAAAATTTGCAGGTGTTCGTAAAGAGCA
TCATGACGGCTCTAGTCGAGGACGCGTCACGGCCACCCCCTCCGGCGTCA
GCTCCGACCAAAGCCAAGGCTAGCGCCACCAGAAGAGTCATTGGAGGCAA
TAATAAGCGCAGAAGCGCGGCAGGTAAAGCAGGAGGTGGCGGCGGGGCAC
CGGGGAAACGCGTGAAAAGGGCGTCCGCGGCAGCATCGAAGTCCTCCCCA
GCAGATAGTGATGTGTCCTCGCTGGATGAGATCAGCAGATCCAGCTCCTC
AGACGATGGAGACGCGGGCAGGAATAAGAAAAGTGTGACTATACGCAAAC
CAGTCGTAGCAATAGAGAGCTACGACTCGGTTATGGCCGACTCGGACTGG
CAGATGCGCGGGCAGCTCCATTTGGTGGAGCGCTGCCCCGCCTTAGTCTA
CAGCTCCTGGCGCGACGCTGATCATGACGTCTATCTCTACCAGTTTCCTC
AGCTGGCCGCCGCGAAACGTGAGGCTAAAGGCATTATCGCCTTCTTCATG
GGTTTCGGACTTTACAAAGAATTCACCGCCGCAGCTTTCAAGAGCATAGT
CATGCCGGGAGATCAGCCCTCACGCCTCCGGTCGCGGGAGGATATCTTTG
CATTCCTGGAGAAAGGCTCACAGCTGCGCTCTACCGCTAAGGGAGGAAGT
GGGGAAGGTGCCCGGCGCAAAGCGTACGTAGCTACGTGGCAGTTTTTCCA
AAAAAATGTTTTCAAGGAGGCGGTCACCGAGGCCGACCCCTTTCCTCCCT
TGGCGCGCCGCGTGCCCAATAAGGGAAAGAAGCGGGCGTCTACCTCCTCC
TCGATGCCCAAAAAGCCGCGCCCCCGCGCCCCTTCGGCGCCCGTACCTCC
GCTCCCCCCGGCGTCCCTGCCTGTTGCTGTCCCTGCCCCCTCCCCTCCCC
CCCCCTCCACGAGCGCACTGTCGCCTCCCCCCCCTTCCTCTCTAGGCATG
ACAAGCACAGGCGAAGCGAAGAGCAAGGACGAGGCGGGCGTTACGGTCAC
GTCATCGGAGGGAGCCCCCTCCCCGCTGGGAGAGGTGGCTCAGGACGGGG
CAGTAGCGACGGCCGGGGGAGTGTGGAACACGATGCCAGACCCGGAGGAC
CGCTCCATCCGCGGGCTCTTCGCATCATTGCGCTGGCGCCTGCTCCGACT
AGAGGAGACCTGGGAGGGTGGGGACCAGTTTGTTTGGACGCTCAAGAGCT
CGCAGAGCAACATCGACAACTTATGCGACAGCCTCTTTGGGGACGCAGGC
GACCCGGAGGCGGACGATTGGCGACGGATGGTAAGCAGCAGCCTAGACAA
GGCGCGCAGGAAGCTGGAGGACAAGCTGCGGGCCTTGGGAGGCCAGGGGG
GGAATGCCGCTACTGGGAAGCCCGCCTATGTGCATGGGCGGGCGCTTTTA
GACGTGTACTCGGAGCTGAAAGAGGCGGTGGCGGGATTCGAGGAAGGGAA
GGAGGCCGAGGTCGAGGGCTGGGACAGCCTGGACTTTCCCGTGCGTGGAC
TCACGTTTGCGCCGACTACTGTAGCAGCCACCTCGGCGGCGTCAGTCTCA
GAGCCGGGTGCCGTGTTGCCGAGCGCGGAGGGCGCGGAGCCTGCGGTGGC
GGGCAAGGAAGACAGCCCGGAGGGGGCGGAAGAGGAAAACAGGGAACATG
GGGAGGAGAATGGAGGAACGAGAGAGTTCGGAGGTGGAGACAGGGCGCGT
GAGGTGGGAGACGTACACGGTAGTGGAGAGGAGTCGCCGCCTGCGGGTGT
GGCCCCCGAGCAGAGCGAGGAAGGGAAAAATGTGAGGCCCGAGCAGAGCG
GGAAGGAAGAGGATGTAGGCAAGGAGAGGTTGGAGCCCATTTCCGCGAAG
CTCCCGGGAGGGCTGCTAGAAGAAGGGCCGGCCCTGCCTTCCGTCTCGAA
AGCTGCAGCAGCGGACTCCGATCCCCTCCTGAAAGCTTGCGTCGACTCCG
AGAACGGGCCGTCCCAGGGCGGAAGCCCCCTTTCTTCCCGTGATTCTAAT
TCGAAAGCATCCCCGGGGGGAAAGCCGGAGGGAGATGGAGGACAGTTCCA
GTTTGTCGAGAGGGAAGAGCTGGCTCCGAGAGACCTGAGAAAATGCACAT
TTGCTAAACGTACCAAGTGGTTGCAAAGAAATCATGTCATTAAAGACTAA

protein sequence of rna3985

>rna3985-protein ID=rna3985-protein|Name=rna3985|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MDSSKSTQVVFAPASNVRGAFSTTGKGVKQHITIEDELRSRRPGITRVPT
KAEFGIEEGEDEEEEEMASGNEKEASKPTGKTISDAITELGNSSGNGAPP
AHAYNKPSLQPKLYQRREDTPPEPKAILKKVSSYHLPPPSTQNGANPSTN
GTSSSSPMNGPSAPPLGRDMSRRSMRQLSFADELGRDLQEVTHAHNLQYG
SHSRHSSPLMCCSVS

mRNA from alignment at CM002462.1:561770..563084-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3985 ID=rna3985|Name=rna3985|organism=Nannochloropsis gaditana|type=mRNA|length=1315bp|location=Sequence derived from alignment at CM002462.1:561770..563084- (Nannochloropsis gaditana)
AAGTCTCTACGTATAGTCCGTACCTGAAGTATAAGCATGTGCGTGCAATA
AATTCGCAGTGACGAAGATAGGCTGCTTGAAGCCTGGAGACGCGGCAATT
TGTCTTTCGCCCCGGGCGACCTCGCCGACCCGGGAGCTAGTTTTAGGGTC
ATCCCCTTGGGCCTCAGCCTTATGAATTACGTCGCACTTAACAAGTAACG
TGGGGGAAATCGGTGTCTCTTTTGGTTTTTTAAAACAGAGACATTGCAAA
CGAGATATTTCGTGGACTTTTTAACCTAACCTGGACAGCCACGGCTTAAA
TTAGGGTCAACGAATCAACCTCTCTCGCATCAGACCCTGTCGATACCGAG
GCTTCGTATGCCTGCAAGTACGCGATAAAGGCACACCATCCCACTCATAG
TACTCAATGGATTCTAGCAAGTCTACTCAAGTGGTATTTGCTCCCGCAAG
CAACGTTCGAGGCGCCTTCAGTACCACTGGAAAGGGAGTAAAGCAGCATA
TAACGATCGAAGACGAACTGCGATCGAGAAGACCAGGCATAACACGGGTC
CCAACAAAAGCCGAATTTGGTATCGAGGAAGGAGAGGATGAGGAAGAAGA
GGAAATGGCTAGCGGGAATGAGAAAGAGGCCTCCAAACCGACTGGAAAGA
CGATTTCAGACGCGATCACGGAGCTCGGAAACAGCTCTGGTAATGGAGCG
CCACCTGCACACGCCTACAACAAACCGTCTCTACAGCCCAAGCTTTATCA
GCGACGAGAAGATACACCCCCAGAGCCAAAAGCGATCTTGAAGAAGGTAT
CTTCCTATCACTTACCCCCTCCTTCGACACAAAATGGTGCCAACCCGAGC
ACGAACGGAACCTCCTCGTCATCCCCGATGAACGGTCCGTCTGCGCCGCC
ATTGGGAAGAGACATGTCGCGGCGCTCTATGCGACAGCTTAGCTTTGCAG
ACGAGCTGGGGAGGGACCTGCAGGAGGTGACGCACGCCCACAATTTGCAG
TATGGCAGCCACTCCCGTCATTCGAGCCCGTTGATGTGTTGCTCTGTCTC
CTGAGATACCGACATCATCGCGTGCGGTCTTTCACGACTGGAATTGAGGA
TGAATTGACGTATGTGTGTAAAGGGTTTTATATGTGCCTGAGGCGGTAGT
CCGAGGAGAAGAATCGTGGACAAGAATGTACATGGGCGGCAGAAGTGAAC
GAAACGGTTCAATGATCCTGGACGATCGCAACCATACTGACAGGGCGAGC
CCCACTTCGATACTTGGCTTTAATATTTAGTCTTTAATGACATGATTTCT
TTGCAACCACTTGGT

Coding sequence (CDS) from alignment at CM002462.1:561770..563084-

>rna3985 ID=rna3985|Name=rna3985|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002462.1:561770..563084- (Nannochloropsis gaditana)
ATGGATTCTAGCAAGTCTACTCAAGTGGTATTTGCTCCCGCAAGCAACGT
TCGAGGCGCCTTCAGTACCACTGGAAAGGGAGTAAAGCAGCATATAACGA
TCGAAGACGAACTGCGATCGAGAAGACCAGGCATAACACGGGTCCCAACA
AAAGCCGAATTTGGTATCGAGGAAGGAGAGGATGAGGAAGAAGAGGAAAT
GGCTAGCGGGAATGAGAAAGAGGCCTCCAAACCGACTGGAAAGACGATTT
CAGACGCGATCACGGAGCTCGGAAACAGCTCTGGTAATGGAGCGCCACCT
GCACACGCCTACAACAAACCGTCTCTACAGCCCAAGCTTTATCAGCGACG
AGAAGATACACCCCCAGAGCCAAAAGCGATCTTGAAGAAGGTATCTTCCT
ATCACTTACCCCCTCCTTCGACACAAAATGGTGCCAACCCGAGCACGAAC
GGAACCTCCTCGTCATCCCCGATGAACGGTCCGTCTGCGCCGCCATTGGG
AAGAGACATGTCGCGGCGCTCTATGCGACAGCTTAGCTTTGCAGACGAGC
TGGGGAGGGACCTGCAGGAGGTGACGCACGCCCACAATTTGCAGTATGGC
AGCCACTCCCGTCATTCGAGCCCGTTGATGTGTTGCTCTGTCTCCTGA

Synonyms

Publications