rna3975, rna3975 (mRNA) Nannochloropsis gaditana

Overview
Namerna3975
Unique Namerna3975
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length675
Alignment locationCM002462.1:539084..539308 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g145.8084.mrna
Orig protein idgnl|cribi|Naga_100001g145.8084
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:539084..539308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g145gene3824Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26573.1cds3965Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3975rna3975-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3975 ID=rna3975|Name=rna3975|organism=Nannochloropsis gaditana|type=mRNA|length=675bp
ATGAGCGGGCCTCACATATCAGAAAGAGTGGTTTTCTTCATGGGAAGGGT
GCGTGGCGCTACAAGGGAGTTGCCAGGCGAAGGGTCGCTTTTGGGCTACG
CGGCGTTCTGCGTACTAGAGCCTAGGGAAATTCCCCGGTACGTGAAAGAA
ATTTTGTTCCCCTTTTGTCGCGCTGCAATAATTGTGCCTTGCTTGTATCT
GAGTCGTCGACGCAAAAATGGCATATCTCGCGACACACGTTTTCTTGTAG
GACAATTTGGGCGAGAGGCCAGGTCTGGACGACCCACCCCTTGCTGTTTG
TGGATGGCCAAGACGCGACGTGGGCACACTGTGACTACGTCGGGGAGCCT
CTCATTTTTGATGGGACTACGAATGGCGAGGCACAATTTGTCATGGTTCA
ATCTCAATGTGCGAACGCAACAGTTATGCGACCGTCTGCTCGTTGCAAGG
CGAGTAAGGCAACAGAACGGGGATTACTCTCGCTTCTGGCCCCTTCCTTT
ATTTAGGGTTGCGCCACCTCTTCTGTTTGGTCTCCTTGTCTGGCGAGTGT
GTTCAAAAATTTTAGCAAACGAGGCAGACGGCGTGCATACGATAGTCTTT
ATCGGCACCATTTCACAACTGCTTTGTTGTCGTGACATTTGCAAAGACAT
CCTGTCCATGTTTCGCACAAGGTAA
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protein sequence of rna3975

>rna3975-protein ID=rna3975-protein|Name=rna3975|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MVPPAAAPSDAGKAFNHASHIHDACRAFCVTSIKILCCLQWNCVGRRRKA
SLCGWPRRSHLPAGLCFGLHRPEQ
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mRNA from alignment at CM002462.1:539084..539308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3975 ID=rna3975|Name=rna3975|organism=Nannochloropsis gaditana|type=mRNA|length=225bp|location=Sequence derived from alignment at CM002462.1:539084..539308- (Nannochloropsis gaditana)
ATGGTGCCACCAGCAGCCGCCCCGTCGGACGCAGGTAAGGCTTTCAATCA
CGCAAGCCATATCCATGACGCCTGTCGTGCTTTTTGTGTTACCTCTATCA
AGATATTATGTTGTCTTCAGTGGAACTGCGTAGGGAGACGGCGGAAGGCG
AGTCTGTGTGGTTGGCCTCGGAGAAGCCACCTCCCCGCAGGGCTTTGCTT
CGGATTGCACCGACCGGAGCAGTGA
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Coding sequence (CDS) from alignment at CM002462.1:539084..539308-

>rna3975 ID=rna3975|Name=rna3975|organism=Nannochloropsis gaditana|type=CDS|length=225bp|location=Sequence derived from alignment at CM002462.1:539084..539308- (Nannochloropsis gaditana)
ATGGTGCCACCAGCAGCCGCCCCGTCGGACGCAGGTAAGGCTTTCAATCA
CGCAAGCCATATCCATGACGCCTGTCGTGCTTTTTGTGTTACCTCTATCA
AGATATTATGTTGTCTTCAGTGGAACTGCGTAGGGAGACGGCGGAAGGCG
AGTCTGTGTGGTTGGCCTCGGAGAAGCCACCTCCCCGCAGGGCTTTGCTT
CGGATTGCACCGACCGGAGCAGTGA
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Synonyms
Publications