rna3972, rna3972 (mRNA) Nannochloropsis gaditana

Overview
Namerna3972
Unique Namerna3972
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2061
Alignment locationCM002462.1:535897..536210 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g148.8284.mrna
Orig protein idgnl|cribi|Naga_100001g148.8284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:535897..536210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g148gene3821Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3972rna3972-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26773.1cds3962Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3972 ID=rna3972|Name=rna3972|organism=Nannochloropsis gaditana|type=mRNA|length=2061bp
TGATTTAACGCGAGTGCCACGGTACAGCCACCACGCACTGCCCTCACCTC
CATGTCAGCCCCTCCCTCGCTTCCTCCCTCCCTCCCTCCCTCGCTCCATC
GCTCCCTCGCTCCCTCGCTCCCTCCCTAACCTCCCTCCTGGCTTCCCTCC
CTCCCTACCTCCCTCCCTCCCTCGCGTCCTCGCTTCCTCTCTTTCTCCCT
CCCTCCATCTTTCCTTCACCCCCTTCCTCACTTTCTGGCTACCTCCACCC
CTCGCTCCCCGCCTCCCTTCCACTCTGGCTCCCTCTCTCGCTTCCTCCCT
CCCTCCCTCCGGGCGGCGAGCGAGTGCACTGCCGAGGCGATGAGGGGGGC
AAAGTGCTTCATCTCGCGTCATTTCCTATTCCATGCGAATTCAAGTATGC
TGACTTTCTGCCACAAATAGAGAGGTGGTAGAACCAAGGAAATGCGCGCG
ACGAAGGAAAATTACCAAAGCGACCGTCTTCGGGATCGCACGGAGAGCTA
TCCTTTCCCGGATGAGCAGGATAATGATATTCCAAATCGCCCGACAGCCC
ATCCATTACTGCGTCTCTCAGACCAGACTGAAGTTCTCATACGTAACGAC
TCAAGAGTAGGATACCCTGTCGAACAGCCGGATGTGGGACCGGAAAGTTT
TGGTTGGCTGTTCCCCGCGCAGCAGATTCTATTGAACTATGTGCTCCAGG
AAGGGACAAGAATAGTTGTGCAGCTCGGCGCTTACCTGGGAAAAACAACA
TTGTTCATCGCGGAGCATGCCCCTCGCGCTTTGATTTTTGTCATCGATCC
CTGGGACAATGCCGCACTCAAAGCTGAGCCGTCTTTGAACAAAAATTTTG
CCAACATCGACCTTTTCGAGCGCATTCCTTTCTATGCCACTTTCCTCCGG
AACACTTGGCATTTAGCGGCACGGCGTGGATCGAACAAAGACAATCTTCT
CGTTGGTGTTGTACCATTACGCATGAAATTTGAAGAGGGCATTGCTTTGC
TAAAGTCTACACTCAACCTGCGCCCAGATGTTCTGTACTGGGAGGGCTTT
CCCAACGAGACGGGTCTGTCTCAGACACTGCACGCTGTGAAGGAGGCATT
TCCAGGCGTGGTAGTTGTAGGTGATGGTTACAATTATTCGGAAGTACAGA
AGGGCCTCGCTAAGGCTAGCAGATCTCTGTTCCAGGAGCGCAAGCCTTTC
GTGGAGATGGGCAAATGCTGGACTTTCCTGCGTCTGAAAAAAGAGATGTT
GTCTGATTTGAGATTGAAGTACACAGCCGCTGACAACAGAGCTAAGCGCA
CCATACTGAGAGACAAAGAAGTAGCGGGGGCTTCTTTCAAAGACTTGCTT
TCTGGGCTAAAGTCGAAGAGCCAGCAGCTCAAATACGAGGAGGCTGGAGA
GCGGGCAGCGAGGCGTATGGCCGAGGAAGAGGAGAGGGACAGGGTCATGC
AAGGGCGGGAATCGGGGGAGACAAGGCGACGTAACAGGCCAGCAATCCAA
GGAATCGGGGAGAAAGGCGGAGGGGTAATACGGATAAGCAAAATGTACGG
AGGAGAAAGTGGACGAGGTCGCGGGAGTCGGAGGATAGGGGGATATGGGG
GATGCGACCAGCAGCATGGCAGAGGGGCGGGGGAAGGAGCTGAGTTTCGA
CGTGGAGATGAGCAGGGCATGGGACGCGGAGTCAGTCGGCATCGCAGCCC
GAGCCAAAGTTCGAGGCCGGAAAAGGAGGCGCCGTCGGGCACCACCATGG
GGGAGAGCGGTTCCGCACCGCGGCAGAGGGAGGAAAGCGACGAGGAAGGG
AGGCGACACTGGAAGCGGAGGTGCTTCCGAAATGAGATTGATGAGAGCGA
AGATGACGAGGCGAGAGGTGAGAGCACCGAGGAAGTGGACGATGACCGCC
CAGTCCGGGGCTAAAGAAACAAAAAAATGCTGTCTAATGCGACGGGGCTG
GCTGGCAAAAGAGGCCTTAAATGATGTTGTCCATCTTCTCGGCAAACACC
ACTTCCCAACCACATCTTCTGAGACAAGCTTTTATCGTACACCCGAGACA
TAATTCTCACC
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protein sequence of rna3972

>rna3972-protein ID=rna3972-protein|Name=rna3972|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MDTKVPGWLESPQSSQPPYLLTVTCFCFPVNCSERKKIAWVRIMSRVYDK
SLSQKMWLGSGVCREDGQHHLRPLLPASPVALDSIFLFL
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mRNA from alignment at CM002462.1:535897..536210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3972 ID=rna3972|Name=rna3972|organism=Nannochloropsis gaditana|type=mRNA|length=314bp|location=Sequence derived from alignment at CM002462.1:535897..536210- (Nannochloropsis gaditana)
ATGGACACGAAGGTTCCGGGTTGGTTAGAGAGCCCGCAAAGCAGCCAACC
CCCTTATCTGCTAACGGTTACTTGCTTTTGCTTCCCTGTTAATTGCTCAG
AGCGAAAGAAAATAGCTGTTGGGGTCGCATAATATACTCTCTTACGTGAA
GCCGAGCTTAGTGGGTGAGAATTATGTCTCGGGTGTACGATAAAAGCTTG
TCTCAGAAGATGTGGTTGGGAAGTGGTGTTTGCCGAGAAGATGGACAACA
TCATTTAAGGCCTCTTTTGCCAGCCAGCCCCGTCGCATTAGACAGCATTT
TTTTGTTTCTTTAG
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Coding sequence (CDS) from alignment at CM002462.1:535897..536210-

>rna3972 ID=rna3972|Name=rna3972|organism=Nannochloropsis gaditana|type=CDS|length=540bp|location=Sequence derived from alignment at CM002462.1:535897..536210- (Nannochloropsis gaditana)
TGGGTGAGAATTATGTCTCGGGTGTACGATAAAAGCTTGTCTCAGAAGAT
GTGGTTGGGAAGTGGTGTTTGCCGAGAAGATGGACAACATCATTTAAGGC
CTCTTTTGCCAGCCAGCCCCGTCGCATTAGACAGCATTTTTTTGTTTCTT
TAGATGGACACGAAGGTTCCGGGTTGGTTAGAGAGCCCGCAAAGCAGCCA
ACCCCCTTATCTGCTAACGGTTACTTGCTTTTGCTTCCCTGTTAATTGCT
CAGAGCGAAAGAAAATAGCTTGGGTGAGAATTATGTCTCGGGTGTACGAT
AAAAGCTTGTCTCAGAAGATGTGGTTGGGAAGTGGTGTTTGCCGAGAAGA
TGGACAACATCATTTAAGGCCTCTTTTGCCAGCCAGCCCCGTCGCATTAG
ACAGCATTTTTTTGTTTCTTTAGATGGACACGAAGGTTCCGGGTTGGTTA
GAGAGCCCGCAAAGCAGCCAACCCCCTTATCTGCTAACGGTTACTTGCTT
TTGCTTCCCTGTTAATTGCTCAGAGCGAAAGAAAATAGCT
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Synonyms
Publications