rna3970, rna3970 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3970
Unique Name	rna3970
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1217
Alignment location	CM002462.1:530698..533747 -

Link to JBrowse

Properties


Property Name	Value
Product	cellulase 2
Orig transcript id	gnl\|cribi\|Naga_100001g150.8172.mrna
Orig protein id	gnl\|cribi\|Naga_100001g150.8172
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:530698..533747 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g150	gene3819	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3970	rna3970-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26661.1	cds3960	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:530698..533747-
coding sequence from alignment at CM002462.1:530698..533747-

mRNA sequence

>rna3970 ID=rna3970|Name=rna3970|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp
TACAGGAACATAATGAAACCTACATCGTCAGTACTTCTGTACCATGCGAA
AGCCATGCGGCAATGGTCAACGTATCACTGCGGCCATCATCATCCTTTTT
CTCGGCATGGAGCGAGACTTATTCCGAGGCGAAAATTCAGTCACTCCGAC
AGCAACAACGTGAGAGCGACCAAGTCTGAGCCTGGCAGCGCCAGAAGTGA
GAAAATGCCAGTAACGTGGGTTGGTTTAGCCATTATGGCAGTGACAGGGA
CGGGCTTAGCGTACTTTTATCAAGTCGAAAAAGAGCGAATGCAGCAGCAA
GCTCTGGGCAAGGTAACAAGTTACGGAAAGCCGGCTCTTGGAGGACCGTG
GACGCTCGTTGATTTTACCGGCAGGCCTGTTACGGACGCCGATTTTCGGG
GGGAATTTCTGCTCTTATACTTTGGTTTCACTCACTGCCCTGATATCTGT
CCGTCGGAGCTTGTCAAGGTTGGCAAAATTTTGGACTCATTAGATCGAGA
GCCAAATCTGCCTGTTGTACGACCTGTTTTCATTTCCGTGGACCCTGACC
GGGATAACGTGGGGCAATTACGTCATTACGCTCAAGGTGCGTTGCCTGAA
GACTCAAAATTGAGCGCAATTTTAATCTAAACTCTCACTCCATTGCCCTC
CAGACTTTCATCCGCGCATCCTGTATTTGACGGGCACGGAGGAACAATTA
TCCAGAATGACCAAGGCTTACCGTGTCTATTTCAGCAAGGCTGATGAAGA
AGATGAAGAAAACTACTTAGTGGATCACTCGATTGTGTTGTACTTAATCG
GGCCCGATGGTTCATTTTTGGATTTTTTTACGCAGTCGATGATTCCTGCG
GACATAGTTAATAGAATTAGAGGGTACCTAACGCAAGCTAGGAGGCTCGC
TGCTTAAGTAAGAAAGGAAGCATGTTTCCAAGTACCCCCAGGACATATGG
TATATTAAACCTTTGTACGTGTGCTTTTGTGTAAACATACAGACGAACAC
ATATTTAATATAGCTTCAAGATGCGCCAGAAGCTGAGAGGGTTCATGATT
ACACATGGGTGCGCTGGAAATCCATCTTTCAATCAAAACCATGTAATTTA
ATCAGTGATGATGCATGCAGAGCGAAGAATTTTCAGCTACTACCGGAGGA
TGACAAGTAGACTAATTTCAACTTCAAGTTTCCCTTCGATCCTTTGAAAC
ACATACCATACATGACC

protein sequence of rna3970

>rna3970-protein ID=rna3970-protein|Name=rna3970|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MSSPGRAKALVFSLIGVSVLAGLTVALLGIYGQGIFPKKDKNGWHDPRLS
YVKTPSLDELRATFVPDTCFDSFDLAWSSGKDGQIYANTAPFFVKGISWF
GCEGHGYTFTGLNFTTVDTILNFFLQHKFNTVRIPVSVAFGLAPKDFKPN
QRFVGKGLKGKTIWEILDEVIDQAALRGLMVMLDMHTLGPQEATDLWYDE
QYKEADILQAWSNIMAAYSIKWNVFALDLKNEPHGIATWGVSAPQTDYNK
FYERAIAHIHTQFPNWKGLYMVEGVQYNKETDKVTDYPFWWGGNFGGAIQ
HPIYVPVPEVMNRVVYSPHVYGPDVYDHPYMNVPAAELANELVKVWDSQM
GWLIPKLQKGMIIGEWGGSLKGRDEIVQTELAKWLVKNCMANNVWWAINP
ESSDTGGIMAWNWKTYDKRRLDLVDSIFPDPTQFGIKHSKLCLRFGTYPN
PQCPVQPFHSPEVATPQKLRH

mRNA from alignment at CM002462.1:530698..533747-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3970 ID=rna3970|Name=rna3970|organism=Nannochloropsis gaditana|type=mRNA|length=3050bp|location=Sequence derived from alignment at CM002462.1:530698..533747- (Nannochloropsis gaditana)
AGGTTGACATAGTGAAGGATTGCACCGACTGTTGCTCGGAAATTCTCGAG
GATATGGTAACAGCCACGAAGCAACAGTCGTAACATTCACAAGATCGGGA
CACGCATAGCTCTTCCTTCTCTGCGCAGCTTTGTTCTCCTTCCTTTTCAC
ACATTGTGACGCTGTCCATGATGAGAGCATCCTAGCGTAGATTATACTTG
CCCCAGGGTAATTGTGCCAGCGCCCCACCAATCAGGGGATAGTGACCTCA
TTTCGGGCTGTGCATCCGTCTGATACACACACAGGGCTGAGAAGGTAGAG
GCAGGCGATCGCGGCTCATCTTTCCCTCTCAGGGTAACGCACGCATCAAA
GCAGCAAGACTGCGTACCATAGAAGGGGCTAAGTGGATCATCACATCTAG
ACGAAAAATCAAGTTTGCGAAATGTCGTCTCCGGGCAGAGCCAAAGCTCT
TGTTTTTTCGCTCATAGGAGTAAGCGTCCTGGCAGGCCTCACGGTTGCCC
TGTTAGGAATCTATGGACAGGGGATTTTCCCCAAAAAAGACAAAAATGGA
TGGCACGACCCGAGGCTCAGTTATGTGAAAACACCCAGTCTGGACGAGCT
AAGGGCAACTTTCGTTCCGGACACATGCTTCGACTCCTTCGATCTCGCCT
GGAGTTCGGGCAAGGATGGTCAGATATACGCCAACACAGCACCCTTCTTT
GTCAAAGGTAAGTAATATAGACGGTGTAGGGTGCGCCTTTTCGCTTCTTG
GGAGAAAACGGGCGTATTAATTGGCATGTCTTCGCAGGGCGCTCCCTTTG
AGTTGTCAATTGATCGTCCTCACAATCTCCTCGCTTTCTATCCTTCGATG
CCGTGCACACGTATCAGGCATCAGTTGGTTTGGATGCGAGGGTCATGGAT
ATACGTTCACCGGCCTGAACTTCACCACTGTGGACACAATCTTAAACTTC
TTCCTGCAGCACAAGTTCAACACGGTTCGCATCCCGGTTTCAGTGGCCTT
CGGGTTAGCGCCAAAGGACTTTAAGCCAAATCAGCGCTTCGTGGGAAAAG
GACTAAAGGGCAAGACTATCTGGGAGATCTTGGACGAGGTGATAGACCAG
GCTGCGTTACGAGGGCTGATGGTGATGCTCGACATGCACACCCTGGGCCC
CCAGGAGGCCACGGATCTTTGGTACGACGAGCAATACAAAGAGGCGGACA
TCCTGCAGGCATGGAGTAATATAATGGCTGCATACTCTATTAAATGGAAT
GTTTTTGCTCTGGACCTGAAAAACGAGCCTCACGGCATCGCTACTTGGGG
CGTTAGTGCGCCTCAGACGGATTACAATAAGTTCTACGAGCGCGCCATTG
CACACATTCACACCCAGTTTCCGAACTGGAAGGGCTTGTACATGGTTGAG
GGTGTGCAATATAACAAAGAGACGGACAAGGTGACCGATTATCCGTTCTG
GTGGGGCGGGAATTTCGGTGGTGCAATTCAACATCCTATATACGTGCCGG
TACCCGAGGTCATGAACAGGGTAGTTTACTCGCCGCACGTGTACGGGCCC
GACGTGTACGATCACCCGTACATGAACGTTCCAGCAGCAGAGCTGGCTAA
CGAGCTTGTTAAGGTGTGGGACTCACAGATGGGCTGGCTTATTCCGAAGC
TGCAGAAGGGCATGATTATCGGAGAGTGGGGCGGGTCGCTGAAAGGGCGT
GATGAGATTGTTCAGACAGAGTTGGCCAAGTGGCTGGTAAAGAATTGCAT
GGCTAATAACGTCTGGTGGGCAATAAACCCTGAGTCGTCGGACACGGGCG
GCATTATGGCCTGGAATTGGAAGACGTACGACAAACGGCGCTTGGACTTG
GTTGACTCGATTTTCCCGGACCCCACCCAGTTCGGTATCAAGCATTCCAA
GCTCTGTCTGCGATTTGGTACCTATCCCAACCCGCAGTGTCCAGTTCAAC
CCTTTCACAGCCCTGAGGTTGCCACCCCCCAGAAATTACGGCATTAAAAT
GCCTCGAGTCAACCGGAGCACTCAGACTACTTTGGGTAGGTGAGGCAAAA
TGCGGGTAGATATCTTAAAGCATGATTCGAGGCGGTGTGTAGGCACAGAC
AAGCACACGCTCTCGTATAAAACCTTGTAATCTATCTGTAGCTCTGGGCG
TTATACGACAAAACATACGCTGCTGCGCACAAATGCGGTGCGCAAATAAT
GGTGCAAACCTTATGCGCACCTCGAACTTCAAGCAAAGATCTCTGTGACC
TTTGGGCTGAATCTCCTCCCAAAATAATGGCAAGTGTAGTGGGAGGAATA
GAAATACAACTACAGAAGGGAAGGTCGACGTGTACTCTTTCTTTGGGTTG
AAAGTCCAGTATAGAACAGTCGGATAGGACCTCGGGTCGTACAATTGATA
ATCGTTCTGCTTTCGTCGTTGCACCCATACCAGTGTTGTGTAAAAGGTGG
GAGGAGATAGAAAACCTGGGGCGACCGCACCTTATTATCTGTCTTTAAAA
GTCGGACGACCGGAAACGGGAATGGGCAGGATCAAAAGGGAGCTGGGAAG
GTCTCTGGGGGGGCAGAGGCACGAATGTGATAGATTATTGTCTCATGTTG
AGATCAATTAAAAAAGTTGGATCATACTACTGTGAAATTAGAGGAAGTGA
TCACACATGAGAGCAACGGGGCAGTATGTGGATGGTCATGTATGGTATGT
GTTTCAAAGGATCGAAGGGAAACTTGAAGTTGAAATTAGTCTACTTGTCA
TCCTCCGGTAGTAGCTGAAAATTCTTCGCTCTGCATGCATCATCACTGAT
TAAATTACATGGTTTTGATTGAAAGATGGATTTCCAGCGCACCCATGTGT
AATCATGAACCCTCTCAGCTTCTGGCGCATCTTGAAGCTATATTAAATAT
GTGTTCGTCTGTATGTTTACACAAAAGCACACGTACAAAGGTTTAATATA
CCATATGTCCTGGGGGTACTTGGAAACATGCTTCCTTTCTTACTTAAGCA
GCGAGCCTCCTAGCTTGCGTTAGGTACCCTCTAATTCTATTAACTATGTC

Coding sequence (CDS) from alignment at CM002462.1:530698..533747-

>rna3970 ID=rna3970|Name=rna3970|organism=Nannochloropsis gaditana|type=CDS|length=2832bp|location=Sequence derived from alignment at CM002462.1:530698..533747- (Nannochloropsis gaditana)
GCATCAGTTGGTTTGGATGCGAGGGTCATGGATATACGTTCACCGGCCTG
AACTTCACCACTGTGGACACAATCTTAAACTTCTTCCTGCAGCACAAGTT
CAACACGGTTCGCATCCCGGTTTCAGTGGCCTTCGGGTTAGCGCCAAAGG
ACTTTAAGCCAAATCAGCGCTTCGTGGGAAAAGGACTAAAGGGCAAGACT
ATCTGGGAGATCTTGGACGAGGTGATAGACCAGGCTGCGTTACGAGGGCT
GATGGTGATGCTCGACATGCACACCCTGGGCCCCCAGGAGGCCACGGATC
TTTGGTACGACGAGCAATACAAAGAGGCGGACATCCTGCAGGCATGGAGT
AATATAATGGCTGCATACTCTATTAAATGGAATGTTTTTGCTCTGGACCT
GAAAAACGAGCCTCACGGCATCGCTACTTGGGGCGTTAGTGCGCCTCAGA
CGGATTACAATAAGTTCTACGAGCGCGCCATTGCACACATTCACACCCAG
TTTCCGAACTGGAAGGGCTTGTACATGGTTGAGGGTGTGCAATATAACAA
AGAGACGGACAAGGTGACCGATTATCCGTTCTGGTGGGGCGGGAATTTCG
GTGGTGCAATTCAACATCCTATATACGTGCCGGTACCCGAGGTCATGAAC
AGGGTAGTTTACTCGCCGCACGTGTACGGGCCCGACGTGTACGATCACCC
GTACATGAACGTTCCAGCAGCAGAGCTGGCTAACGAGCTTGTTAAGGTGT
GGGACTCACAGATGGGCTGGCTTATTCCGAAGCTGCAGAAGGGCATGATT
ATCGGAGAGTGGGGCGGGTCGCTGAAAGGGCGTGATGAGATTGTTCAGAC
AGAGTTGGCCAAGTGGCTGGTAAAGAATTGCATGGCTAATAACGTCTGGT
GGGCAATAAACCCTGAGTCGTCGGACACGGGCGGCATTATGGCCTGGAAT
TGGAAGACGTACGACAAACGGCGCTTGGACTTGGTTGACTCGATTTTCCC
GGACCCCACCCAGTTCGGTATCAAGCATTCCAAGCTCTGTCTGCGATTTG
GTACCTATCCCAACCCGCAGTGTCCAGTTCAACCCTTTCACAGCCCTGAG
GTTGCCACCCCCCAGAAATTACGGCATTAAATGTCGTCTCCGGGCAGAGC
CAAAGCTCTTGTTTTTTCGCTCATAGGAGTAAGCGTCCTGGCAGGCCTCA
CGGTTGCCCTGTTAGGAATCTATGGACAGGGGATTTTCCCCAAAAAAGAC
AAAAATGGATGGCACGACCCGAGGCTCAGTTATGTGAAAACACCCAGTCT
GGACGAGCTAAGGGCAACTTTCGTTCCGGACACATGCTTCGACTCCTTCG
ATCTCGCCTGGAGTTCGGGCAAGGATGGTCAGATATACGCCAACACAGCA
CCCTTCTTTGTCAAAGGCATCAGTTGGTTTGGATGCGAGGGTCATGGATA
TACGTTCACCGGCCTGAACTTCACCACTGTGGACACAATCTTAAACTTCT
TCCTGCAGCACAAGTTCAACACGGTTCGCATCCCGGTTTCAGTGGCCTTC
GGGTTAGCGCCAAAGGACTTTAAGCCAAATCAGCGCTTCGTGGGAAAAGG
ACTAAAGGGCAAGACTATCTGGGAGATCTTGGACGAGGTGATAGACCAGG
CTGCGTTACGAGGGCTGATGGTGATGCTCGACATGCACACCCTGGGCCCC
CAGGAGGCCACGGATCTTTGGTACGACGAGCAATACAAAGAGGCGGACAT
CCTGCAGGCATGGAGTAATATAATGGCTGCATACTCTATTAAATGGAATG
TTTTTGCTCTGGACCTGAAAAACGAGCCTCACGGCATCGCTACTTGGGGC
GTTAGTGCGCCTCAGACGGATTACAATAAGTTCTACGAGCGCGCCATTGC
ACACATTCACACCCAGTTTCCGAACTGGAAGGGCTTGTACATGGTTGAGG
GTGTGCAATATAACAAAGAGACGGACAAGGTGACCGATTATCCGTTCTGG
TGGGGCGGGAATTTCGGTGGTGCAATTCAACATCCTATATACGTGCCGGT
ACCCGAGGTCATGAACAGGGTAGTTTACTCGCCGCACGTGTACGGGCCCG
ACGTGTACGATCACCCGTACATGAACGTTCCAGCAGCAGAGCTGGCTAAC
GAGCTTGTTAAGGTGTGGGACTCACAGATGGGCTGGCTTATTCCGAAGCT
GCAGAAGGGCATGATTATCGGAGAGTGGGGCGGGTCGCTGAAAGGGCGTG
ATGAGATTGTTCAGACAGAGTTGGCCAAGTGGCTGGTAAAGAATTGCATG
GCTAATAACGTCTGGTGGGCAATAAACCCTGAGTCGTCGGACACGGGCGG
CATTATGGCCTGGAATTGGAAGACGTACGACAAACGGCGCTTGGACTTGG
TTGACTCGATTTTCCCGGACCCCACCCAGTTCGGTATCAAGCATTCCAAG
CTCTGTCTGCGATTTGGTACCTATCCCAACCCGCAGTGTCCAGTTCAACC
CTTTCACAGCCCTGAGGTTGCCACCCCCCAGAAATTACGGCATTAAATGT
CGTCTCCGGGCAGAGCCAAAGCTCTTGTTTTTTCGCTCATAGGAGTAAGC
GTCCTGGCAGGCCTCACGGTTGCCCTGTTAGGAATCTATGGACAGGGGAT
TTTCCCCAAAAAAGACAAAAATGGATGGCACGACCCGAGGCTCAGTTATG
TGAAAACACCCAGTCTGGACGAGCTAAGGGCAACTTTCGTTCCGGACACA
TGCTTCGACTCCTTCGATCTCGCCTGGAGTTCGGGCAAGGATGGTCAGAT
ATACGCCAACACAGCACCCTTCTTTGTCAAAG

Synonyms

Publications