rna3962, rna3962 (mRNA) Nannochloropsis gaditana

Overview
Namerna3962
Unique Namerna3962
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1335
Alignment locationCM002462.1:516015..516987 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g158.8222.mrna
Orig protein idgnl|cribi|Naga_100001g158.8222
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:516015..516987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g158gene3813Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3962rna3962-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26711.1cds3952Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3962 ID=rna3962|Name=rna3962|organism=Nannochloropsis gaditana|type=mRNA|length=1335bp
CGTAGACACGGCGTCGCCGAGTCAGGCTACCGGCCTCAGCGAGAGGAAAA
AAGGGCGCACGAGTCTCTGTATAACGTCACGCGTCTGCTTGACGGCATCG
AATGCTTGATCGCGTAGGTCAGTCTTGCACGTTGAGCGGGTGCGTCGACT
CTCAAGAGCAGTGCAGACCTATTTTCGTCTTTCTGCGCCCGGTCTCCTTC
TTTACTCAACATCCGAGCAAAGAAAACCTTACCCCCCCTAGCTGAAGAGA
CGACTTCTGTTTGGGCATGACCATGGACACCTCATTCTCCTCTAGAGAGT
AAAAGTAAGCAAGTAAAAGCAGGACGGCAAATGATTATGTGCTGCCAAAA
GTCTAATGGCTTTCATATGTCATGTCATACGACGCTTGTTGACATCTGAC
AATCAAAACTCCACACCAGAACTCGCACTAGAATTCATCCACTAGGGTAA
TGTATGTCTCGACTGCAAAGATACATGGCAAGTTCTCTCCGCTCGTAGCG
GCTGTCCTGTTCTTCCTTTTGACACATGTCCCCCTAGCTGTTGGGGGCTC
TCTGCATGAAGGTGATTGGACCCAGAAGAAAGAGGACGAAACTATCACTG
GTGGTAGAGAGCCATCTACTCGGGTCAAAGGTAAGCAGAGGCGGCGTATG
GCGACGCACGTCAATGACGAAGAAATCCTTCATTTACTTCGGCATGACCC
CGTCGAAATGACTTTGGAAGAGGCCAGTGACTGGCAGCGTGTGAAACGCA
GATTAAGCAAAGCCCGTGAGGAGACCGGATGGTTCCACCGCGTTGAAGAT
GTTTATGTACCACCCGACTCGGCGCTGCGTTTTAAAAAGGACGTGGACAA
CAGCAAAGATGGAAGCCTTTTTGCAGGGGACTACTTTCGCCGGACTTCCA
GCGATCAGCAGGAGGAAAAGGTTGTAAGATCAAGCTCCAAGGGGAAGGAG
GCTGCGAATGAGTACCGGATCTTTGAACGCGCGCGGAAAAATGCGATCTA
GCAGTCGAGAGAATGAGTAAGGAGGAAAGTGGGAATGGACATGGGTCATC
GCAGGCACCATGGCGGATGCTCATGTTGTCTATGAGATGCGATATGCCTT
CGTCAGATTTGCGGTTGCAGTTCGTAAGTTACAAGTGAAATCCATTCTTT
TGAAGCACTCTAACATTTTTTTGTGAATATCATCTACACTTATGAAAGTT
TGAATACTTCTTGCTTGCCTAACGCGGGATAGAAAAAAGTATATGTGCAT
CTACAAGAACCATATAGTCAATCTCTTTCACTTAGATACAGAGTTTGCAA
TCACGAAAATTGAAAAACACTCCGATTTACTGCCG
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protein sequence of rna3962

>rna3962-protein ID=rna3962-protein|Name=rna3962|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MLAALSTVPAFIEFRCLSPLRNYFLPSWCFRRPGGRINKCSAPTHENSSC
LTPHATNMNERKFCDAPSPIPSFQDEFKVILAQQLRAVSSIDTDVDRYLI
PRNFRKFILESFDMQTLGKKGEDTLLRRIMHAHLSGPTDGDPVYRQLMQA
LHTSQNPWVAASENVLFESVTAKIVTSSKKTSHLAEG
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mRNA from alignment at CM002462.1:516015..516987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3962 ID=rna3962|Name=rna3962|organism=Nannochloropsis gaditana|type=mRNA|length=973bp|location=Sequence derived from alignment at CM002462.1:516015..516987+ (Nannochloropsis gaditana)
TCCAATTTACGTAGCGCGGGGGGCATCGACGAGCCAATCTACATTGAGTG
CAATTCACCCAAGGAACTTACAGTGAAGTATGGTAATTTTTCGTGTAGCC
CAAATTATACGATGCATAACGTTACAACTTTCTTGAGGGACACGGCTCAT
GTATCGCGTCTTGTTTTCAGGTTGTCGACGGGATAAGACCCTGACTGTGT
TACTCATTTTCCCCACCGCTTCCGCCTGATACAATTAATGCAAAAATACA
TGAATAACGCGGCCGTTCTTGAGCCAAATCTCAAATTTTTGAGGACTCAC
AGGTCCTTATATAAATTAATGTTAACACTTTCTCCTGCGCATGACACCAT
CTTATCCGGTGTTCATGTGTGACTTCACCCACCTGGCAAAACAGCATCGC
AGTAAGGCATGCTTGCAGCTCTCAGCACTGTTCCAGCATTCATCGAGTTT
CGGTGCCTGTCGCCCTTACGGAATTATTTTCTGCCTTCATGGTGCTTTCG
CCGTCCGGGTGGGCGCATCAATAAATGTTCTGCTCCGACACACGAAAATT
CATCTTGTCTCACGCCACACGCCACGAACATGAATGAACGCAAATTTTGT
gatgctccttctcctaTACCTTCATTTCAAGATGAGTTTAAAGTCATTCT
CGCGCAGCAGCTTCGGGCCGTCTCCAGTATTGACACGGATGTTGACCGCT
ATCTGATCCCTCGGAACTTTCGAAAGTTCATTCTTGAAAGTTTCGACATG
CAGACACTTGGAAAAAAGGGTGAAGATACTCTGCTGCGCCGCATTATGCA
TGCACATCTTTCGGGGCCAACGGATGGGGATCCCGTGTATAGGCAACTGA
TGCAAGCACTCCATACTTCGCAGAATCCGTGGGTCGCAGCCTCCGAGAAT
GTTCTGTTTGAATCTGTCACGGCCAAAATTGTAACATCCAGCAAGAAGAC
CAGTCACTTAGCTGAAGGTTAGT
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Coding sequence (CDS) from alignment at CM002462.1:516015..516987+

>rna3962 ID=rna3962|Name=rna3962|organism=Nannochloropsis gaditana|type=CDS|length=564bp|location=Sequence derived from alignment at CM002462.1:516015..516987+ (Nannochloropsis gaditana)
ATGCTTGCAGCTCTCAGCACTGTTCCAGCATTCATCGAGTTTCGGTGCCT
GTCGCCCTTACGGAATTATTTTCTGCCTTCATGGTGCTTTCGCCGTCCGG
GTGGGCGCATCAATAAATGTTCTGCTCCGACACACGAAAATTCATCTTGT
CTCACGCCACACGCCACGAACATGAATGAACGCAAATTTTGTgatgctcc
ttctcctaTACCTTCATTTCAAGATGAGTTTAAAGTCATTCTCGCGCAGC
AGCTTCGGGCCGTCTCCAGTATTGACACGGATGTTGACCGCTATCTGATC
CCTCGGAACTTTCGAAAGTTCATTCTTGAAAGTTTCGACATGCAGACACT
TGGAAAAAAGGGTGAAGATACTCTGCTGCGCCGCATTATGCATGCACATC
TTTCGGGGCCAACGGATGGGGATCCCGTGTATAGGCAACTGATGCAAGCA
CTCCATACTTCGCAGAATCCGTGGGTCGCAGCCTCCGAGAATGTTCTGTT
TGAATCTGTCACGGCCAAAATTGTAACATCCAGCAAGAAGACCAGTCACT
TAGCTGAAGGTTAG
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Synonyms
Publications