rna3959, rna3959 (mRNA) Nannochloropsis gaditana

Overview
Namerna3959
Unique Namerna3959
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length948
Alignment locationCM002462.1:511069..511541 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g161.8268.mrna
Orig protein idgnl|cribi|Naga_100001g161.8268
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:511069..511541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g161gene3810Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3959rna3959-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26757.1cds3949Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3959 ID=rna3959|Name=rna3959|organism=Nannochloropsis gaditana|type=mRNA|length=948bp
ATGGTCTGCATGGGAAGATCGCGCTCCTCCACTGATCCTGAAGTCACGGG
AGCAGTCGGACTACGCGCTTATGCTCATGTCATCGAGCCTCGCCTACTAC
GCGTCATGGTCGTGGATACATACATCGCTCAAGCCAGCGATATAAGACAA
TTTTTGGAGCACGAGGTAGGGCGTGATTTGGTTCCTGGGTTCGTGGCAGC
ATTTGATGTCGTGCAAGATGGTGTGGAGGCACTCGCTCTGGCCCATGGAG
TCCCGTACGATGCAATTTTCCTTTCAGAAAGTTTGCACGGCATCACGGCA
GAAGAGCTCGTCTCAGACTTGTTTCGAATCGGATCAGATGCTTTTATGGT
TATGATCGTTGGGGCTCAATGTGTGAGATCAGATTCTATATCTGCGGCTG
GCTTCACCGCCACCTTGTTGCGACCTGTAACGGGTTCGAAGATAGCAGAT
GCGCTTCGAGCCCTGTACTCACCGCAAGGACTGTCGAGTCATTCCCCTAG
ATCGACCGAATCCTTCATGAGGAAAAATCCGCCTGTAAACATGAGTTCGC
CTTTCACAAGCTTGACAAGGTCGGCGCGGGCTGATAGGGTCGAGACACTC
ATCCCTCCTGCAAGGGATCTGCCAGACTGGACTCATTTTACTCCACGAAT
CTCTGACATAGATGAGTCTTATCACTCCCTGAGCGGTGATGCCACCAGCT
TTTGGAGACCTCCACAAATTTTGTCGATGGCTATAAGTGAGACCCTGGGT
CACCTGCTACTCCAAGGAGGGAAGAAGGTGAAATCGGAGAATCGGGGCTA
TTGCATAGGATCTGCTTGGCTTACGCCTTTTCGACTAGTTCGGGGCAAGC
AAGCGTCCTCCATCCTGCATGGTGGGCAACACCGCGTCTTGGGTGACACT
GCGAAGCTTATCTGTGTTACATTCACGTCTGACTACTTTGCAAATTGA
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protein sequence of rna3959

>rna3959-protein ID=rna3959-protein|Name=rna3959|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MREKTSAIYVGRVSETIWKHSAYSAYIRHSTELRNLHVVNQVFEPICCVI
MKCLHSRAQGMSSNSEAVARCKYRLQSFRRTALLLSRQYNGERDGISQIE
MFKFHYLIH
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mRNA from alignment at CM002462.1:511069..511541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3959 ID=rna3959|Name=rna3959|organism=Nannochloropsis gaditana|type=mRNA|length=473bp|location=Sequence derived from alignment at CM002462.1:511069..511541- (Nannochloropsis gaditana)
ATGAGGGAGAAGACTTCGGCAATTTACGTGGGCAGGGTGTCTGAGACGAT
TTGGAAACACTCAGCTTATAGTGCATATATTAGTTAGAGAGTTAACCTAG
CTTCAGCAATTTAGGGCGTAGGAGAAGGATTTACCGCTGCCACAGCTGAA
AACGCAGGTCAAGCAACAAATAGTAAGGACACTCAACGGAGCTGAGGAAC
TTACATGTTGTCAATCAAGTATTTGAGCCTATTTGCTGTGTTATTATGAA
GTGTTTGCATTCCCGGGCACAAGGAATGAGCTCTAACAGTGAAGCAGTCG
CGAGATGTAAGTACAGGCTGCAATCGTTTGTAAGGTTTTAAATTTCCCTG
TTGCCTTCTATTCAAAAAACTTAGCAGCGAAGGACTGCATTGCTACTGAG
CAGGCAATATAATGGAGAAAGAGATGGTATATCACAAATAGAAATGTTTA
AGTTCCACTATCTCATTCATTGA
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Coding sequence (CDS) from alignment at CM002462.1:511069..511541-

>rna3959 ID=rna3959|Name=rna3959|organism=Nannochloropsis gaditana|type=CDS|length=990bp|location=Sequence derived from alignment at CM002462.1:511069..511541- (Nannochloropsis gaditana)
CGAAGGACTGCATTGCTACTGAGCAGGCAATATAATGGAGAAAGAGATGG
TATATCACAAATAGAAATGTTTAAGTTCCACTATCTCATTCATTGAGACA
CTCAACGGAGCTGAGGAACTTACATGTTGTCAATCAAGTATTTGAGCCTA
TTTGCTGTGTTATTATGAAGTGTTTGCATTCCCGGGCACAAGGAATGAGC
TCTAACAGTGAAGCAGTCGCGAGATGTAAGTACAGGCTGCAATCGTTTAT
GAGGGAGAAGACTTCGGCAATTTACGTGGGCAGGGTGTCTGAGACGATTT
GGAAACACTCAGCTTATAGTGCATATATTACGAAGGACTGCATTGCTACT
GAGCAGGCAATATAATGGAGAAAGAGATGGTATATCACAAATAGAAATGT
TTAAGTTCCACTATCTCATTCATTGAGACACTCAACGGAGCTGAGGAACT
TACATGTTGTCAATCAAGTATTTGAGCCTATTTGCTGTGTTATTATGAAG
TGTTTGCATTCCCGGGCACAAGGAATGAGCTCTAACAGTGAAGCAGTCGC
GAGATGTAAGTACAGGCTGCAATCGTTTATGAGGGAGAAGACTTCGGCAA
TTTACGTGGGCAGGGTGTCTGAGACGATTTGGAAACACTCAGCTTATAGT
GCATATATTACGAAGGACTGCATTGCTACTGAGCAGGCAATATAATGGAG
AAAGAGATGGTATATCACAAATAGAAATGTTTAAGTTCCACTATCTCATT
CATTGAGACACTCAACGGAGCTGAGGAACTTACATGTTGTCAATCAAGTA
TTTGAGCCTATTTGCTGTGTTATTATGAAGTGTTTGCATTCCCGGGCACA
AGGAATGAGCTCTAACAGTGAAGCAGTCGCGAGATGTAAGTACAGGCTGC
AATCGTTTATGAGGGAGAAGACTTCGGCAATTTACGTGGGCAGGGTGTCT
GAGACGATTTGGAAACACTCAGCTTATAGTGCATATATTA
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Synonyms
Publications