rna3955, rna3955 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3955
Unique Name	rna3955
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2935
Alignment location	CM002462.1:501907..502857 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g166.8202.mrna
Orig protein id	gnl\|cribi\|Naga_100001g166.8202
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:501907..502857 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g166	gene3806	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3955	rna3955-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26691.1	cds3945	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:501907..502857-
coding sequence from alignment at CM002462.1:501907..502857-

mRNA sequence

>rna3955 ID=rna3955|Name=rna3955|organism=Nannochloropsis gaditana|type=mRNA|length=2935bp
CACGCCAAACGCGGCCCTTAACCCTGGACACGTCCTGGCTTCCGGGAGAG
AGGACACATAGGTCGTATATACGTACTTGCATGTGAAATGACACGGTAGC
CCATACTTTTCAAGATCCGTCACGAAATAAAATTATCAGTTCATTCCCAG
GCGAGAAAGTTAACACATCAGACTCGTTTCTGGTGCTGTCCAACAGCGTA
GGTCATCCTTCTTCCTGCGGTTTTCCCTCCGCCAAACAGATGCGCAACAA
TGGTCTCGAAAGTAGATGCTTCGCTCGGCAGAAGCTGGGCCACCTGACAA
ATTCACGTTATCAGTGTTACCTGACGTGTATACGCGAGCACGTCTTGGGA
TGTTCACTAGTCGAAACCTTCCATCTTCAGGGGCAAGGGGAAGACGACCA
TGCTTGCCCAACTTCCTCCCGACAGACCTTCAAGAATAAAATGGAAGTGA
CATTTGATCGTGCAAGCATAGAAAATATATTCATCACACGTCCCATCCAC
TGTCAATTAGCACCAAAGGAAAGGGTCTCACTACACATCCCGTTACGCTG
CATAGTAGCATTAAATCCACAGGGGACAGGGTGAGAGGCACTGCACGGTC
AAAAAAGAATGAGCCATATCCTTCATCATAGAGTACGCATCCGTGCGTGG
TCGTCATCGCTTGGAACATTTTTAACGACCCCAACGGGGCGTTGTGGCAG
CTGGGAAGCGAGGAACGTCAGGACCACTTACCATGACGAGAGATATGGCC
TGGGTGGCTCTGGAAGGAGAACGCTTACAAATAGCACAGATGTATCTGGG
GAGCATTATATTAGCGTTGATAAGCGAGGCCTCTATGAAGAAGTGACGCG
AGCTATGAGTGGAAAAAAAGAAAAGTCTCCACTGACGCCCCTAGGAAAGC
TTCTGCAAACATCGATAAAGCAGGTGGGTCCTATATCCATTGCGGACTTT
ATGGACGTGTGCTTAGCGCATCCGGAGCACGGCTACTACATGAAACAGCA
GACGACTAAGATTGGCAAGGGCGGTGATTTTGTGACGGCTCCCGAGATCA
GTCAAATGTTCGGAGAATTGTTGGGAGTATGGGCCGTGGCAACGTGGGAA
AAGTTGGGAACGCCCCGAGTGTTTCGCTTGGCGGAGATTGGACCGGGAAA
GGGGACGCTGATGAAGGATATCTTGCGGGTGGCTCAAAACTTTCCTCCAT
TTCACAACGCGCTGGGTGGTGTATCCATGATTGAGACCAGCCAAGCTTTG
CGGCGAGTCCAGGCGGAGGCATTGGGAGCAGTTTCAATCGACAAAAATTG
GACTAACTCTGATACAGAAAGAGACTCTGACGCACGTGACATTGGAGATG
AGGCAGAATGGGAGCGTGGAGGCAGGCGACACGAACGCAAAGCCCGCTGG
TGCCTACCCTGCAAGCGTAAGATTGACTGGCACGATGACGTAAGGCAAAT
GCCGGTGGAGAGCCCGTCGATAATTTTTGCTCAAGAACTACTGGATGCGT
TGCCAGTGCATCAATTCGAATATACGGAAAACGGCTGGCGGGAACGGCTG
GTTGACGTGGACGAGGACCCCCAAACGCCGCATCATTTCAAGTTCATCCT
AGCCAAAGAGCCGACCGTGCCAGTTATCCACCTGGAAAGGATAATGCCAA
GAACATTACAAAACTTTCTGGACACCGCCGCTTGTTCTCCTTGCGGGCAC
GATAAAATATCAGACGGGACGAAGACGGACGAGGCAATTGAAGACCCAGA
AAAGAAGAAATTGGGCACCAGCTTGGAGGTTTGCCCTTTGGCCTTGCAGC
TCGCGCAACATGTGGCGGAGCGCGTCTCCCGGACAGGTGGTGCGGCTCTA
TTCGTCGACTATGGAGAGGATATGGCGCAGGGGGACACTCTGAGGGGATT
AAAAATGCATGCATTGGTGCATCCGCTCGCAGAGCCTGGAGAAGTGGATT
TAAGCGCGGACGTTGACTTTCAGGGTTTAAGGGAGGCCGTGGCCCACGTT
GAGGGATTGAGAGTGTTCGGACCGATGAGTCAAGGGGAATTTTTGTCAGC
GATGGGCATCGAGGCGCGGTTACAGGCCTTACTGGGCGGCGAAGGTGAGG
AACGCTCGGGGTTGACAGATCGTCAGGCACTGTTGCTGTACGACTCCTAT
CGTCGACTGGTGGACCCCGAGCAGATGGGAAGGAAGTACAAGGTGCTAGC
TTTTGTCGCGAAGAGTCATCAAGGACCCGCCGTAGCTTTCCCTTCCACAT
CTCTTAGAACAAAGGGTGTAACTGAGAATAGTGAAGAAGCGAGTGGAGAA
TGAGAGAAAGAAGGAACGACACTTTTTATCCCTGATATCACTGCAAGATT
GCGTGAGTAACTCCGAGTGTGAGATGCCTAGGACGAACTGGTAATGTATA
AGAATCAGTCCGAGATAGCCTCAGATTGAACTGAACTGATTTGTCAGTAA
GTCCAGACCAAGAAGAGCCGCATTGAAACTGGAGTTACATTTCTTTGACA
GGATACATGACATGGTGAACCGTACAATCACAAGTCGTTACACGCAAATG
CAGTCCTTCACGTGATTTCCACATGCCGACGCACGCACAGCATGCCTAAA
GCGACGTAAAAAAGACCTAAGCTCAAGAAAACAAAGCCCATTACATTATC
GCTGCTTGGACTGAAGTCTTCAATGCTCAGACATGCTATGAGACAGTAAA
AAAATCCCCGCACGAAAAAATTACTTAGAATTGGACATAGCTTTCTCCAC
CACTTAATGCCCGACTCATTCAGGATAGCCGGAAATGCTAAGACAATTGC
AAAGCCTCTATGTATCCGGGGCAGAATCGAGTTCGTGTCTTTGTCCTTAG
TCGCGATGAGATACAAATTGTAGGCTACACTCACAAGACTTAAGAGCACT
GTAAATGTTGATAGTACCGCAAAAAATGGCTTTGT

protein sequence of rna3955

>rna3955-protein ID=rna3955-protein|Name=rna3955|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MHYPGADTLHNFPIVDGIRLALPSFESFSTRCIEAVRTSCLQLNRPASYL
LQAYSLVRATTLKHIWHQTIPVLVGWRKTLQKVCWSQHVMRRRPRKKSPS
LLSSHHQTRRNGRETRRRRITKPFFAVLSTFTVLLSLVSVAYNLYLIATK
DKDTNSILPRIHRGFAIVLAFPAILNESGIKWWRKLCPILSNFFVRGFFY
CLIACLSIEDFSPSSDNVMGFVFLSLGLFYVALGMLCVRRHVEIT

mRNA from alignment at CM002462.1:501907..502857-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3955 ID=rna3955|Name=rna3955|organism=Nannochloropsis gaditana|type=mRNA|length=951bp|location=Sequence derived from alignment at CM002462.1:501907..502857- (Nannochloropsis gaditana)
ATGCATTACCCGGGGGCTGACACACTGTAAGTTGTCGCGGGATTCTCAGT
CGTGCGCCACAAGACCCCACGCACAATGTACCGAAGTCATATTTTATGCT
CTTCAGTGCGCTTACGCTTTTCGCCCGCATAAGTACTGAAGTGGTTTCGG
CCTCAGCATTTATCGGACAAGTACGTTTCCTCCCTCATGCGTACACAGGC
ACAATTTCCCAATTGTGGATGGAATTAGGTTGGCGTTGCCTTCCTTTGAG
TCTTTTTCTACGCGCTGCATCGAAGCGGTAAGGACAAGTTGTTTGCAGCT
CAACAGGCCTGCGAGTTACTTATTACAAGCGTACAGCCTGGTACGAGCAA
CCACACTTAAGCATATATGGCATCAAACGATCCCAGTCCTCGTTGGTTGG
AGGAAGACGCTACAAAAAGTTTGTTGGAGTCAGCATGTCATGAGGAGGAG
GCCGAGGAAGAAGAGTCCCTCGCTACTGAGCAGTCACCACCAAACAAGAA
GAAACGGCGTTCCGAGAGGCATGAGGAAAGTCGTTGTCAGAGTAACGAGC
GCGAAACCCGAAGGCGCCGTATCACAAAGCCATTTTTTGCGGTACTATCA
ACATTTACAGTGCTCTTAAGTCTTGTGAGTGTAGCCTACAATTTGTATCT
CATCGCGACTAAGGACAAAGACACGAACTCGATTCTGCCCCGGATACATA
GAGGCTTTGCAATTGTCTTAGCATTTCCGGCTATCCTGAATGAGTCGGGC
ATTAAGTGGTGGAGAAAGCTATGTCCAATTCTAAGTAATTTTTTCGTGCG
GGGATTTTTTTACTGTCTCATAGCATGTCTGAGCATTGAAGACTTCAGTC
CAAGCAGCGATAATGTAATGGGCTTTGTTTTCTTGAGCTTAGGTCTTTTT
TACGTCGCTTTAGGCATGCTGTGCGTGCGTCGGCATGTGGAAATCACGTG
A

Coding sequence (CDS) from alignment at CM002462.1:501907..502857-

>rna3955 ID=rna3955|Name=rna3955|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002462.1:501907..502857- (Nannochloropsis gaditana)
CGCGAAACCCGAAGGCGCCGTATCACAAAGCCATTTTTTGCGGTACTATC
AACATTTACAGTGCTCTTAAGTCTTGTGAGTGTAGCCTACAATTTGTATC
TCATCGCGACTAAGGACAAAGACACGAACTCGATTCTGCCCCGGATACAT
AGAGGCTTTGCAATTGTCTTAGCATTTCCGGCTATCCTGAATGAGTCGGG
CATTAAGTGGTGGAGAAAGCTATGTCCAATTCTAAGTAATTTTTTCGTGC
GGGGATTTTTTTACTGTCTCATAGCATGTCTGAGCATTGAAGACTTCAGT
CCAAGCAGCGATAATGTAATGGGCTTTGTTTTCTTGAGCTTAGGTCTTTT
TTACGTCGCTTTAGGCATGCTGTGCGTGCGTCGGCATGTGGAAATCACGT
GAGCACAATTTCCCAATTGTGGATGGAATTAGGTTGGCGTTGCCTTCCTT
TGAGTCTTTTTCTACGCGCTGCATCGAAGCGGTAAGGACAAGTTGTTTGC
AGCTCAACAGGCCTGCGAGTTACTTATTACAAGCGTACAGCCTGGTACGA
GCAACCACACTTAAGCATATATGGCATCAAACGATCCCAGTCCTCGTTGG
TTGGAGGAAGACGCTACAAAAAGTTTGTTGGAGTCAGCATGTCATGAGGA
GGAGGCCGAGGAAGAAGAGTCCCTCGCTACTGAGCAGTCACCACCAAACA
AGAAGAAACGGCATGCATTACCCGGGGGCTGACACACTCGCGAAACCCGA
AGGCGCCGTATCACAAAGCCATTTTTTGCGGTACTATCAACATTTACAGT
GCTCTTAAGTCTTGTGAGTGTAGCCTACAATTTGTATCTCATCGCGACTA
AGGACAAAGACACGAACTCGATTCTGCCCCGGATACATAGAGGCTTTGCA
ATTGTCTTAGCATTTCCGGCTATCCTGAATGAGTCGGGCATTAAGTGGTG
GAGAAAGCTATGTCCAATTCTAAGTAATTTTTTCGTGCGGGGATTTTTTT
ACTGTCTCATAGCATGTCTGAGCATTGAAGACTTCAGTCCAAGCAGCGAT
AATGTAATGGGCTTTGTTTTCTTGAGCTTAGGTCTTTTTTACGTCGCTTT
AGGCATGCTGTGCGTGCGTCGGCATGTGGAAATCACGTGAGCACAATTTC
CCAATTGTGGATGGAATTAGGTTGGCGTTGCCTTCCTTTGAGTCTTTTTC
TACGCGCTGCATCGAAGCGGTAAGGACAAGTTGTTTGCAGCTCAACAGGC
CTGCGAGTTACTTATTACAAGCGTACAGCCTGGTACGAGCAACCACACTT
AAGCATATATGGCATCAAACGATCCCAGTCCTCGTTGGTTGGAGGAAGAC
GCTACAAAAAGTTTGTTGGAGTCAGCATGTCATGAGGAGGAGGCCGAGGA
AGAAGAGTCCCTCGCTACTGAGCAGTCACCACCAAACAAGAAGAAACGGC
ATGCATTACCCGGGGGCTGACACACTCGCGAAACCCGAAGGCGCCGTATC
ACAAAGCCATTTTTTGCGGTACTATCAACATTTACAGTGCTCTTAAGTCT
TGTGAGTGTAGCCTACAATTTGTATCTCATCGCGACTAAGGACAAAGACA
CGAACTCGATTCTGCCCCGGATACATAGAGGCTTTGCAATTGTCTTAGCA
TTTCCGGCTATCCTGAATGAGTCGGGCATTAAGTGGTGGAGAAAGCTATG
TCCAATTCTAAGTAATTTTTTCGTGCGGGGATTTTTTTACTGTCTCATAG
CATGTCTGAGCATTGAAGACTTCAGTCCAAGCAGCGATAATGTAATGGGC
TTTGTTTTCTTGAGCTTAGGTCTTTTTTACGTCGCTTTAGGCATGCTGTG
CGTGCGTCGGCATGTGGAAATCACGTGAGCACAATTTCCCAATTGTGGAT
GGAATTAGGTTGGCGTTGCCTTCCTTTGAGTCTTTTTCTACGCGCTGCAT
CGAAGCGGTAAGGACAAGTTGTTTGCAGCTCAACAGGCCTGCGAGTTACT
TATTACAAGCGTACAGCCTGGTACGAGCAACCACACTTAAGCATATATGG
CATCAAACGATCCCAGTCCTCGTTGGTTGGAGGAAGACGCTACAAAAAGT
TTGTTGGAGTCAGCATGTCATGAGGAGGAGGCCGAGGAAGAAGAGTCCCT
CGCTACTGAGCAGTCACCACCAAACAAGAAGAAACGGCATGCATTACCCG
GGGGCTGACACACT

Synonyms

Publications