rna3954, rna3954 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3954
Unique Name	rna3954
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2940
Alignment location	CM002462.1:499350..502284 +

Link to JBrowse

Properties


Property Name	Value
Product	Putative S-adenosyl-L-methionine-dependent methyltransferase MidA
Orig transcript id	gnl\|cribi\|Naga_100001g167.8150.mrna
Orig protein id	gnl\|cribi\|Naga_100001g167.8150
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:499350..502284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g167	gene3805	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3954	rna3954-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26639.1	cds3944	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:499350..502284+
coding sequence from alignment at CM002462.1:499350..502284+

mRNA sequence

>rna3954 ID=rna3954|Name=rna3954|organism=Nannochloropsis gaditana|type=mRNA|length=2940bp
GTCGGGCTCCAACTAAGGCCGACAACGGCCGGTGACAGGAGATGCGCCCT
CGGGGAAATCGACCCGGGCCTTGAATGTGTCTCCGGTCCCTAGAACAAGT
AAGTGCATTACACCGTATCAGAATACCCCACACGCCAACGATGCCAGCGT
GCAAGCGCCAAGTCGAAAGCCGGGGACGTGTGCGTCCGTCCCTATCACTA
GAAAAGCGTTTGACGAACGAAAATTGAGACGTCATGTCAGACGTGATTCA
GTGGACCAGTCGACACCAGACTTTCACGTTGTACATCTCAGACGATAGAC
AAGAAAGCCAAGCACATGTGTAAATATTGCGAGGTATCCTGTTGAAATAG
TCAATATGTATACATAGAGAGAGTGTGAAGAGACGAGTGGTTATAAGCTT
TCCACCACGATACCTCCATCATAGCTTTGCGTCTTCACGTTGCCTACTAT
CCTCATAAACTCTCACATCATTTTCTCCTGGCATCATGGTAAATCGTTGG
GAAAGGCAGCTTTTTTGGTTCTGGCGAAAATTTGGTCGAGTCGACCTGAT
GTTTGTCAAACTCATCTTTCGCTGGGGGACAGACACCCGTTTTCAAATTT
CCTCCCTCACACCTCTTGATCCCAACTGCGTAGGTTCTAGTCCACAGAGC
GTTGCACACTTCTGGGTGAATGGACTTTGGCGATGATAATGCAGGTTATG
CAGATATGCGTGACATCGGCTCTTGGTATCAGTTGGGGGGGGCCGTGGTC
TGTGTGATATGTGCAGCTTTCGCGGCGGGCCTCACTGTGGGACTCATGTC
CCTAGACCCGCTTGAATTGGAAGTCAAACGTCGTGTTGGAACGCCAGAGG
AACGCAAGCATGCAGAGAAAATTTGCCCTTTAATTGCTCCGCACCATCGG
CTTCTCGTCACCCTCCTGCTTTTCAATTCCATAGCTAATGAAGCCCTACC
CATTTTCCTGTCGGGCCTGGTTCCTGGCTACGTTGCTGTCTTGCTGTCTG
TAACAGCCATTCTCATCTTTGGTGAAATCATCCCGTCAGCCATCTTTACG
GGGCCAAATCAAATAATTATGGCGGCGCATTTCTCAGGGTTTGTCTACTT
TTTAATGGGCGTCTTCTGGCCTATCGCGTACCCCATTGGAAAAGTGCTAG
ACAAGTGGTTGGGCCATAACTCTTTTAAGCGCTATACGCGAGAGGAGCTA
TCTACGCTGGTAGACCTCCAGCGAGAAGTAGGGGTGGTGAAGCATCGTCG
GCCTCCGGGATCTCATTCCGGCAGCGGGGGTGGTGGTGGGACTCTGAAGG
CGGCGAAAGAGAAGGAGTTAGGAGAAAGCATGCGCGCGATTACGGTAGAC
GAGGCGACAATTGTAGCGGGGGTGCTCAAATGCCATGCTAAAAAGATTTG
CGATGCTTTAAAGCCGATGGATGTCGTGTACACCTTGTGTGAAGAAGATA
TTCTGGACGAGAACAAGCTCTGCGAGATCATGGCGTGCGGCTACTCACGT
ATCCCAGTGCACAGTGCACGTGGCCGTCAAGACATCCGAGGCTTTCTTCT
GGTGAAGAGACTGATTGTTCTTGATCCAGCCGATCGTCGCCCGGTCCGTA
CTTTGCCTTTGCGGCAACCCATCGTTGTATCGCCCACCGGGTCCCTCCTT
GAGCTGATCAACGTTTTTCAAGAAGGCAGGAGTCACATGGCTATCGTTTC
TCCTTGTCCAGACCTTACGCGGCAGGCCCTTCGATCAAATAAACCTCTGG
AGGGGAGGATCGCGCCCATAGGAATAATTACGTTGGAGGACTTATTCGAA
GAAATCTTGCAAGAGGAGATCTACGATGAACATGATGATCGGGAGAGGAA
GGCGATTGAGACTTTACGGCGTGTACGACGAAAAGTTCGTCGTCTTCATC
AGCAGCAGCAGCACAAGCAGCAAGGGCCACAGCAACAGGCATTCAGTGGA
AGCGGGCACTTAAGTGCGAGCAGTAGTACAAGCAGCAGCGTCTTAATGAA
CCAGTCACCGGATTCATCCCCTGCTTCCTCGACAATGTCCAGTGGCGGGC
TTTCGCCCACTACCACTGCCACATTCCTGCTGTTGAATAGCGATACACCC
TCTCTATTGCCTGTTTCGCATCGAGTGTCTGCATGCCCATCACAAAATGA
CCCATCAACAGGCCTTCTGTCGGGTGGGCCAAAAAATGATAGCACACATA
TACCCGGAGATGGGAAAACTGAGATGAAATCAGCCACGAGGAGAAAGAAA
AATGGAGAACATAAAGAAAAGCCATTCAGCTGTTCTTCCACTATCGCCAA
CGGTCTCGTGAAGATGCAGTCTCCGACGTCGTATGGCAGCACCGACATGG
GCGACTCCCTTGTGTAGAGAACAAAGAGAAGCATTGCAAGGCACACGAGC
GAGCGGTGGCTAAATCGGTGGAAGTCAGGTCTAAGCTGTATGAGTAATTT
TTTTCTGCTGCTCAAGATGTTCTTGGGTGGGCTCGATGTCTGAAATTTAA
AAGACGCATGAGTCTTTGCGTTCGGAGTGATAAGCGAAAGAAATAATAAA
AATGGGGCATTTTGTGTCGGAAATTGACTGCTTTAGGGGCAACGTGTAGT
AGCATGGGCAACACTTAGTACTAAAATCTCGCTTTTCTTGACTTTCAGAA
AAGAAGTTTTCAGAATGTCTGCGCCATACGATTAGTGACAGTATGCCAGA
TTGGCTCGCGACCAAAAAGTTGTGATCGACATAAAGTGTGTCATGGAAAA
GTTTACAACCCTAACCCTAACATTCAGGATACTCATCGTATACCAGTGAG
GGTCCGATCGTCTTTCAAGGTTTGACGAGAAGTTTTTGAGGAGCAACCTT
GACAAGAAGTCTTTGTAGAATAAAAAAAAGCCTGGATCGTTAACTTTAAG
GCCATACATAATCGCTGGTCTTTGTTAGTTCCAATGCTCG

protein sequence of rna3954

>rna3954-protein ID=rna3954-protein|Name=rna3954|organism=Nannochloropsis gaditana|type=polypeptide|length=564bp
MSHILHHRVRIRAWSSSLGTFLTTPTGRCGSWEARNVRTTYHDERYGLGG
SGRRTLTNSTDVSGEHYISVDKRGLYEEVTRAMSGKKEKSPLTPLGKLLQ
TSIKQVGPISIADFMDVCLAHPEHGYYMKQQTTKIGKGGDFVTAPEISQM
FGELLGVWAVATWEKLGTPRVFRLAEIGPGKGTLMKDILRVAQNFPPFHN
ALGGVSMIETSQALRRVQAEALGAVSIDKNWTNSDTERDSDARDIGDEAE
WERGGRRHERKARWCLPCKRKIDWHDDVRQMPVESPSIIFAQELLDALPV
HQFEYTENGWRERLVDVDEDPQTPHHFKFILAKEPTVPVIHLERIMPRTL
QNFLDTAACSPCGHDKISDGTKTDEAIEDPEKKKLGTSLEVCPLALQLAQ
HVAERVSRTGGAALFVDYGEDMAQGDTLRGLKMHALVHPLAEPGEVDLSA
DVDFQGLREAVAHVEGLRVFGPMSQGEFLSAMGIEARLQALLGGEGEERS
GLTDRQALLLYDSYRRLVDPEQMGRKYKVLAFVAKSHQGPAVAFPSTSLR
TKGVTENSEEASGE

mRNA from alignment at CM002462.1:499350..502284+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3954 ID=rna3954|Name=rna3954|organism=Nannochloropsis gaditana|type=mRNA|length=2935bp|location=Sequence derived from alignment at CM002462.1:499350..502284+ (Nannochloropsis gaditana)
CACGCCAAACGCGGCCCTTAACCCTGGACACGTCCTGGCTTCCGGGAGAG
AGGACACATAGGTCGTATATACGTACTTGCATGTGAAATGACACGGTAGC
CCATACTTTTCAAGATCCGTCACGAAATAAAATTATCAGTTCATTCCCAG
GCGAGAAAGTTAACACATCAGACTCGTTTCTGGTGCTGTCCAACAGCGTA
GgtcatccttcttcctgcggTTTTCCCTCCGCCAAACAGATGCGCAACAA
TGGTCTCGAAAGTAGATGCTTCGCTCGGCAGAAGCTGGGCCACCTGACAA
ATTCACGTTATCAGTGTTACCTGACGTGTATACGCGAGCACGTCTTGGGA
TGTTCACTAGTCGAAACCTTCCATCTtcaggggcaaggggaagacgacca
TGCTTGCCCAACTTCCTCCCGACAGACCTTCAAGAATAAAATGGAAGTGA
CATTTGATCGTGCAAGCATAGAAAATATATTCATCACACGTCCCATCCAC
TGTCAATTAGCACCAAAGGAAAGGGTCTCACTACACATCCCGTTACGCTG
CATAGTAGCATTAAATCCACAGGGGACAGGGTGAGAGGCACTGCACGGTC
AAAAAAGAATGAGCCATATCCTTCATCATAGAGTACGCATCCGTGCGTGG
TCGTCATCGCTTGGAACATTTTTAACGACCCCAACGGGGCGTTGTGGCAG
CTGGGAAGCGAGGAACGTCAGGACCACTTACCATGACGAGAGATATGGCC
TGGGTGGCTCTGGAAGGAGAACGCTTACAAATAGCACAGATGTATCTGGG
GAGCATTATATTAGCGTTGATAAGCGAGGCCTCTATGAAGAAGTGACGCG
AGCTATGagtggaaaaaaagaaaagtcTCCACTGACGCCCCTAGGAAAGC
TTCTGCAAACATCGATAAAGCAGGTGGGTCCTATATCCATTGCGGACTTT
ATGGACGTGTGCTTAGCGCATCCGGAGCACGGCTACTACATGAAACAGCA
GACGACTAAGATTGGCAAGGGCGGTGATTTTGTGACGGCTCCCGAGATCA
GTCAAATGTTCGGAGAATTGTTGGGAGTATGGGCCGTGGCAACGTGGGAA
AAGTTGGGAACGCCCCGAGTGTTTCGCTTGGCGGAGATTGGACCGGGAAA
GGGGACGCTGATGAAGGATATCTTGCGGGTGGCTCAAAactttcctccat
ttcacAACGCGCTGGGTGGTGTATCCATGATTGAGACCAGCCAAGCTTTG
CGGCGAGTCCAGGCGGAGGCATTGGGAGCAGTTTCAATCGACAAAAATTG
GACTAACTCTGATACAGAAAGAGACTCTGACGCACGTGACATTGGAGATG
AGGCAGAATGGGAGCGTGGAGGCAGGCGACACGAACGCAAAGCCCGCTGG
TGCCTACCCTGCAAGCGTAAGATTGACTGGCACGATGACGTAAGGCAAAT
GCCGGTGGAGAGCCCGTCGATAATTTTTGCTCAAGAACTACTGGATGCGT
TGCCAGTGCATCAATTCGAATATACGGAAAACGGCTGGCGGGAACGGCTG
GttgacgtggacgaggaccccCAAACGCCGCATCATTTCAAGTTCATCCT
AGCCAAAGAGCCGACCGTGCCAGTTATCCACCTGGAAAGGATAATGCCAA
GAACATTACAAAACTTTCTGGACACCGCCGCTTGTTCTCCTTGCGGGCAC
GATAAAATATCAGACGGGACGAAGACGGACGAGGCAATTGAAGACccaga
aaagaagaaattggGCACCAGCTTGGAGGTTTGCCCTTTGGCCTTGCAGC
TCGCGCAACATGTGGCGGAGCGCGTCTCCCGGACAGGTGGTGCGGCTCTA
TTCGTCGACTATGGAGAGGATATGGCGCAGGGGGACACTCTGAGGGGATT
AAAAATGCATGCATTGGTGCATCCGCTCGCAGAGCCTGGAGAAGTGGATT
TAAGCGCGGACGTTGACTTTCAGGGTTTaagggaggccgtggcccaCGTT
GAGGGATTGAGAGTGTTCGGACCGATGAGTCAAGGGGAATTTTTGTCAGC
GATGGGCATCGAGGCGCGGTTACAGGCCTTACTGGGCGGCGAAGGTGAGG
AACGCTCGGGGTTGACAGATCGTCAGGCACTGTTGCTGTACGACTCCTAT
CGTCGACTGGTGGACCCCGAgcagatgggaaggaagtacAAGGTGCTAGC
TTTTGTCGCGAAGAGTCATCAAGGACCCGCCGTagctttcccttccacat
CTCTTAGAACAAAGGGTGTAACTGAGAATAGTGAAGAAGCGAGTGGAGaa
tgagagaaagaaggaacgACACTTTTTATCCCTGATATCACTGCAAGATT
GCGTGAGTAACTCCGAGTGTGAGATGCCTAGGACGAACTGGTAATGTATA
AGAATCAGTCCGAGATAGCCTCAGATTGAACTGAACTGATTTGTCAGTAA
GTCCAGACCAAGAAGAGCCGCATTGAAACTGGAGTTACATTTCTTTGACA
GGATACATGACATGGTGAACCGTACAATCACAAGTCGTTACACGCAAATG
CAGTCCTTCACGTGATTTCCACATGCCGACGCACGCACAGCATGCCTAAA
GCGACGTAAAAAAGACCTAAGCTCAAGAAAACAAAGCCCATTACATTATC
GCTGCTTGGACTGAAGTCTTCAATGCTCAGACATGCTATGAGACAGTAAA
AAAATCCCCGCACGAAAAAATTACTTAGAATTGGACATAGCTTTCTCCAC
CACTTAATGCCCGACTCATTCAGGATAGCCGGAAATGCTAAGACAATTGC
AAAGCCTCTATGTATCCGGGGCAGAATCGAGTTCGTGTCTTTGTCCTTAG
TCGCGATGAGATACAAATTGTAGGCTACACTCACAAGACTTAAGAGCACT
GTAAATGTTGATAGTACCGCAAAAAATGGCTTTGT

Coding sequence (CDS) from alignment at CM002462.1:499350..502284+

>rna3954 ID=rna3954|Name=rna3954|organism=Nannochloropsis gaditana|type=CDS|length=1695bp|location=Sequence derived from alignment at CM002462.1:499350..502284+ (Nannochloropsis gaditana)
ATGAGCCATATCCTTCATCATAGAGTACGCATCCGTGCGTGGTCGTCATC
GCTTGGAACATTTTTAACGACCCCAACGGGGCGTTGTGGCAGCTGGGAAG
CGAGGAACGTCAGGACCACTTACCATGACGAGAGATATGGCCTGGGTGGC
TCTGGAAGGAGAACGCTTACAAATAGCACAGATGTATCTGGGGAGCATTA
TATTAGCGTTGATAAGCGAGGCCTCTATGAAGAAGTGACGCGAGCTATGa
gtggaaaaaaagaaaagtcTCCACTGACGCCCCTAGGAAAGCTTCTGCAA
ACATCGATAAAGCAGGTGGGTCCTATATCCATTGCGGACTTTATGGACGT
GTGCTTAGCGCATCCGGAGCACGGCTACTACATGAAACAGCAGACGACTA
AGATTGGCAAGGGCGGTGATTTTGTGACGGCTCCCGAGATCAGTCAAATG
TTCGGAGAATTGTTGGGAGTATGGGCCGTGGCAACGTGGGAAAAGTTGGG
AACGCCCCGAGTGTTTCGCTTGGCGGAGATTGGACCGGGAAAGGGGACGC
TGATGAAGGATATCTTGCGGGTGGCTCAAAactttcctccatttcacAAC
GCGCTGGGTGGTGTATCCATGATTGAGACCAGCCAAGCTTTGCGGCGAGT
CCAGGCGGAGGCATTGGGAGCAGTTTCAATCGACAAAAATTGGACTAACT
CTGATACAGAAAGAGACTCTGACGCACGTGACATTGGAGATGAGGCAGAA
TGGGAGCGTGGAGGCAGGCGACACGAACGCAAAGCCCGCTGGTGCCTACC
CTGCAAGCGTAAGATTGACTGGCACGATGACGTAAGGCAAATGCCGGTGG
AGAGCCCGTCGATAATTTTTGCTCAAGAACTACTGGATGCGTTGCCAGTG
CATCAATTCGAATATACGGAAAACGGCTGGCGGGAACGGCTGGttgacgt
ggacgaggaccccCAAACGCCGCATCATTTCAAGTTCATCCTAGCCAAAG
AGCCGACCGTGCCAGTTATCCACCTGGAAAGGATAATGCCAAGAACATTA
CAAAACTTTCTGGACACCGCCGCTTGTTCTCCTTGCGGGCACGATAAAAT
ATCAGACGGGACGAAGACGGACGAGGCAATTGAAGACccagaaaagaaga
aattggGCACCAGCTTGGAGGTTTGCCCTTTGGCCTTGCAGCTCGCGCAA
CATGTGGCGGAGCGCGTCTCCCGGACAGGTGGTGCGGCTCTATTCGTCGA
CTATGGAGAGGATATGGCGCAGGGGGACACTCTGAGGGGATTAAAAATGC
ATGCATTGGTGCATCCGCTCGCAGAGCCTGGAGAAGTGGATTTAAGCGCG
GACGTTGACTTTCAGGGTTTaagggaggccgtggcccaCGTTGAGGGATT
GAGAGTGTTCGGACCGATGAGTCAAGGGGAATTTTTGTCAGCGATGGGCA
TCGAGGCGCGGTTACAGGCCTTACTGGGCGGCGAAGGTGAGGAACGCTCG
GGGTTGACAGATCGTCAGGCACTGTTGCTGTACGACTCCTATCGTCGACT
GGTGGACCCCGAgcagatgggaaggaagtacAAGGTGCTAGCTTTTGTCG
CGAAGAGTCATCAAGGACCCGCCGTagctttcccttccacatCTCTTAGA
ACAAAGGGTGTAACTGAGAATAGTGAAGAAGCGAGTGGAGaatga

Synonyms

Publications