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Properties
| Property Name | Value |
|---|
| Product | Kelch-type beta propeller |
| Orig transcript id | gnl|cribi|Naga_100001g173.8120.mrna |
| Orig protein id | gnl|cribi|Naga_100001g173.8120 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:489997..492582 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3951 ID=rna3951|Name=rna3951|organism=Nannochloropsis gaditana|type=mRNA|length=1874bp
AAAATATCAATCAAGTACGCATTGTAGGATCTTGGCAGCGGTAAAACCGG
CGTTTTAATTGATATCATCACGAAGGCCTCCTTGAGCCAGTCTTTCACAA
CGATGGCAAAGTGTCCTCCCGATGGAACCACAATTGCATTTTTTTCTTCC
GTCCATTTCCTCATATTTGTAATGGGAATATATTTGAAGACTTCTGATGG
ATTTATTTGTCCTCGGGGTGGTATGCAGCGATTATCCTTGAGTCCCTGCC
CTCAGCAGCGTACGGTGTTTGCTATGATGGCAGGCAGAAAACCACCATGG
CAACGCCGGGGGCCGGATAAGAAGCAAGACTCGGAAGATGAATTGTGGGT
CCTTGAACAGAGCTTATTGAATGGGAGTTCTCCTCGAACATCTGCCTTTG
TTCCGAGCATCACCCCTACTTCAAAAACTTCATCTTCGACCCCCGAAAAG
ACTGACAATACTTTAAAAGATACGGATGGAAATTTTGGGACGCTTCGAGA
TGAAGCAAATATAACAGCACAATTTATGTTCGTCGCGAACACTTCGGAGT
CTTTGATACGCGTGGATCGATTGTTGACTCAGCGACTGAAGGGCCACAGC
CGCAGCTCGGTGTGCGACTTGCTGGACCGCGGCTTCGTCTACGTCAACGG
CAGTCCCGCACGGAAGAGTCTCAAAATTGTGGAGGGCGACGAAATATTTG
TGCGGCAGTGCGCGACAAATGAGAGGTTGGCAGAAGTGGAGGAGGAGGAC
ATACCTTTGGACGTGTTGTATGAGGACGAACACGTCATCGCCGTGAATAA
AGCCCCGGGCATGGTGGTGCATCCGGCTCCCGGAAATCGGAATGGGACCT
TCGTCAATGCCCTGTTGGCTCACGTGGCTCGTAGAGGGGGGGAAATTGAA
GAGGTTGTCGGAAGCGAGGGTCGTCCAGGCGTGGTGCATCGGTTGGATAA
GGGCACAAGCGGAGTGTTACTTGCGGCCAAAACCGCCCGAGCTCACGCGG
CCCTGTCGTCCGCATTCGCCGAGCGCCGTGTCAACAAGACTTACTTGGCG
ATCAGCATTGGAAATCCGAGCTCACAAGGAGCGGTAATCGACGTGCCCAT
TGGCCGACATCCCAGGGATAGGCAGCGGATGGCTGTGGCCATGCAAGCGC
GCACGTCGCATACCTCTTCTTTTCCTGGCGCGAGCTATGCCCAGGACGCA
GTGCTGAACTATGACGGGTGCAGTGAGGATGATCAGGAAATTGGGTACAA
TTCGACAGAGGGAGAAGAGCTCTTGATGGGCCGCGGGGGAAATTCGGGGA
ACACGCCTTTGACGGGGCGCAAAGCACGCAGCACGGTCAAGACCCTCGCC
TTTGATGGTCGGCTCAGCGTGGTAGAGGTAGGGATTGAAACAGGGCGCAC
GCATCAGATCCGCGTACACCTACAGCACCGCCGGAATCCCGTGCTGGGAG
ATGAACTGTACGGGAATGCTCAGTGGAACGCTCGGGCACGGCGGCGGTGG
GGAGTCACTCGACCGATGCTGCACGCCCTCCGCCTGGTGGTGGACCATCC
CGTGACAGGGGACCCTTTGCGTCTTGTCGCACCAGTGCCTCCAGACATGC
TTTCAGTTGCACATGGCATATGGCCCCAAGTAAAGGGAAGAGAGAATGAG
GAGTGGTGGGATATGGTAGATCGAAGGCCCTCAGCGGGAGACGAAAGTAT
GACGGACGGGAAAGATTTGATTGAATCCCAGCAGGGGTGGGAAGAGGTAG
TTCATGACCCCAAGGCTGGTGAGAGAGTAGTCGATGAGTTTGACTGGGAG
ATCGATTAAGAAGAAGCTGGAACAGGTCTGAAATGTAAAAAATAAGAAAT
CATACCAAACATAATGAGTGTTGA back to topprotein sequence of rna3951 >rna3951-protein ID=rna3951-protein|Name=rna3951|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MHTSDYLPHRRQILVFRGGDGREYLNDLHGLHVDTGRWERLRCSGTIPEA
RANHCSAVLNRHLFIFGGWNGQTRLNDVHVLDTDTMVWSRLEPRGVAPPP
RAGMTLTRIRDRLYLFGGSGPAAKCFDDLQILDLKEMCWTEITSRSKSGG
GGSSGTALSSGSGVGEERAIPGAHLASAAENSGLERSRGGGWGGNQANPN
DEHVTESVSIWGEGPGPRAGHSATVLDRRLVIFGGSHGSRYLGEMFVLDT
DPVPEPLVIAPSCAQLIGSHLRHYLDREDFSDVTLIVEKRPVRAHRLVLS
IASDRFKAMFSSGFRESSEREVEVEGCSFEVFKLMLGYIYTGEPPSALLV
GSQSDPILAAELLALADQYMLDHLKQLCEARLTEEVREDTVDSIMDLAER
SNSWQLRAVCRHFVRNRDERHASFASSF back to topmRNA from alignment at CM002462.1:489997..492582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3951 ID=rna3951|Name=rna3951|organism=Nannochloropsis gaditana|type=mRNA|length=2586bp|location=Sequence derived from alignment at CM002462.1:489997..492582- (Nannochloropsis gaditana)
TACCCGGCAATTAGTGGGGCTGAAGCTCTCACACCGAGGCTGGAAGTACA
TGTGTTAGTGTCTGCCGCTCTGTATGACTTTGCGACCACTATCTCTTTGT
CTACTCCAAAATGCGCTTGATAATTTATGCGCACTCATTATTGATCGTAG
CAATCCCGCATATAGCTTTCCTCCCAGATGCTACCCCGCGAGGGTGAAAC
TCGTCGAGCTCCTCCCTGTCCTTCATTGTCATACTAAAGCCAGCAAAACA
AGGCCCGACTACCATTTCGGTTCGGAAGTCTTATTACAGGCATTATGTTG
AGATGGATAAGACAAGATCGGATCATGGATATGCCCACACTTAAAAATCA
CACCGCCACGCTTGTGGGAAACCGGGTACGTTATCCCCCCCCCTTTGCAG
TGGTAACCGTATACAAGAAAGTTACCATTCATTTTCATGATTTCCCTCTA
GATTTTTGTCTTCGGTGGTTACGATGGCCAGCGCAATCATTCGACTCTAC
ATGTTTTTGACCACACTACCCTGCGCTGGGTAAGTTTCTTTTTGTTCCTC
TTTCCCGTTCATACACCCGTATATTATTATACCGCCCCGGATATGATCCA
CATAAAGTTTTCTAGCCTTGAAGATAGGGGGCAGCTTATCATCTTATCAA
TTTCTTTCTCCGTTAAAACGCAAGGTCTGCGAAAAAGTTTCCGGCAAAGC
TCCCCCCGGGCGCAACGGTCACACTGCCACCCTTGCAGAAAACAAGCTCT
ACATCATTGGGGGCTGGCTGGGCTCCGGGCCTCTGGCGGCCAGCGACGTG
CACTACATCGATCTAGCAGAGATGAAGTGGGTGGAGCCCCCCCATCCTGG
GTGAAGCCCCGGGTCCGTGCAACATGCACACGAGCGACTACCTGCCTCAC
CGGCGCCAGATCCTGGTCTTTCGGGGCGGGGACGGCCGGGAATACTTGAA
CGATTTGCATGGCCTTCACGTAGACACCGGGCGGTGGGAAAGGCTGCGAT
GCTCAGGGACGATTCCGGAAGCGCGCGCCAATCACTGCTCGGCTGTCTTA
AATCGCCACCTCTTCATTTTCGGTGGGTGGAATGGACAGACGCGTTTGAA
CGACGTGCACGTATTAGACACCGACACGATGGTGTGGAGCCGCCTTGAGC
CGCGAGGTGTAGCGCCTCCGCCCCGCGCGGGTATGACCCTCACCCGCATC
CGGGACAGGCTCTACTTGTTCGGGGGCTCCGGCCCTGCAGCCAAGTGCTT
CGACGATCTTCAGATCCTTGATCTCAAGGAGATGTGCTGGTACGTGTGGG
GGCTTAAAATTTCGGGAGAGGGTTCAAGAAAGACGGGCTGTTAGAGTGAT
CGACCTAAGAGCGCATAGACTCTTGTTCGTAATCACTACTCTGCCGCCCG
TGTGAGGCAAGTGACATGTGTCAGGACTTCCCGTATTCCCGTATCCGTGA
TCGGCGTCCACACGGACCACTAGGACGGGCTGATACCTGACTGTATCCTT
CCAAATGCATTCTCAATCAGGACGGAAATCACATCACGATCGAAAAGCGG
TGGAGGTGGCAGTTCAGGAACAGCGCTGAGCAGCGGGTCCGGAGTCGGGG
AGGAAAGAGCAATTCCAGGTGCACACCTTGCTTCCGCCGCAGAGAACAGC
GGTCTTGAAAGATCGCGAGGGGGTGGTTGGGGCGGAAATCAGGCCAACCC
AAACGATGAGCATGTGACGGAGTCGGTCTCAATTTGGGGAGAAGGTCCTG
GTCCTCGCGCTGGACACAGCGCAACCGTGCTCGATCGGCGCCTCGTCATT
TTCGGTGGCTCTCACGGATCGCGCTACCTCGGTGAGATGTTTGTGCTTGA
TACAGACCCCGTTCCAGAGCCCCTGGTCATCGCTCCATCGTGCGCTCAGC
TCATAGGGAGTCATTTACGACACTACCTCGATCGGGAGGATTTCTCGGAT
GTGACGCTAATCGTTGAAAAGCGGCCTGTTCGGGCGCACCGATTGGTCCT
GTCCATAGCTAGCGATCGTTTCAAAGCAATGTTTTCCTCAGGGTTCCGAG
AGTCATCTGAACGGGAGGTGGAAGTAGAAGGCTGTAGCTTTGAGGTCTTC
AAGCTCATGTTGGGATACATCTACACCGGAGAGCCCCCGAGCGCATTGCT
TGTTGGCAGTCAGTCGGATCCTATATTGGCTGCCGAACTCCTAGCGCTCG
CGGATCAGTACATGTTGGACCACTTGAAGCAATTGTGCGAAGCTCGCCTC
ACAGAGGAGGTGAGGGAGGACACCGTCGACTCCATAATGGATTTGGCAGA
AAGGAGCAATTCATGGCAGCTTCGTGCAGTCTGTCGGCACTTTGTGCGAA
ATCGTGATGAGAGGCACGCGTCCTTCGCCTCGTCTTTCTGAGTAATCATA
ATCCAAAACTAAGCGATGTACATATTTGCTCATGAGACAACAGTGGGGCC
GTAAGAAACGAGACTTTATCTAAAACCTTTTTTTGCTCCTTATGTTCAGA
GCAGAACAAATAAAAAAACAGATTACCCCAGGGTAACGCCCAGAAAGTGG
AAGGGCGCAAGGTTTTCAACACTCACTATGTTTATC back to topCoding sequence (CDS) from alignment at CM002462.1:489997..492582- >rna3951 ID=rna3951|Name=rna3951|organism=Nannochloropsis gaditana|type=CDS|length=2574bp|location=Sequence derived from alignment at CM002462.1:489997..492582- (Nannochloropsis gaditana)
GACGGAAATCACATCACGATCGAAAAGCGGTGGAGGTGGCAGTTCAGGAA
CAGCGCTGAGCAGCGGGTCCGGAGTCGGGGAGGAAAGAGCAATTCCAGGT
GCACACCTTGCTTCCGCCGCAGAGAACAGCGGTCTTGAAAGATCGCGAGG
GGGTGGTTGGGGCGGAAATCAGGCCAACCCAAACGATGAGCATGTGACGG
AGTCGGTCTCAATTTGGGGAGAAGGTCCTGGTCCTCGCGCTGGACACAGC
GCAACCGTGCTCGATCGGCGCCTCGTCATTTTCGGTGGCTCTCACGGATC
GCGCTACCTCGGTGAGATGTTTGTGCTTGATACAGACCCCGTTCCAGAGC
CCCTGGTCATCGCTCCATCGTGCGCTCAGCTCATAGGGAGTCATTTACGA
CACTACCTCGATCGGGAGGATTTCTCGGATGTGACGCTAATCGTTGAAAA
GCGGCCTGTTCGGGCGCACCGATTGGTCCTGTCCATAGCTAGCGATCGTT
TCAAAGCAATGTTTTCCTCAGGGTTCCGAGAGTCATCTGAACGGGAGGTG
GAAGTAGAAGGCTGTAGCTTTGAGGTCTTCAAGCTCATGTTGGGATACAT
CTACACCGGAGAGCCCCCGAGCGCATTGCTTGTTGGCAGTCAGTCGGATC
CTATATTGGCTGCCGAACTCCTAGCGCTCGCGGATCAGTACATGTTGGAC
CACTTGAAGCAATTGTGCGAAGCTCGCCTCACAGAGGAGGTGAGGGAGGA
CACCGTCGACTCCATAATGGATTTGGCAGAAAGGAGCAATTCATGGCAGC
TTCGTGCAGTCTGTCGGCACTTTGTGCGAAATCGTGATGAGAGGCACGCG
TCCTTCGCCTCGTCTTTCTGAATGCACACGAGCGACTACCTGCCTCACCG
GCGCCAGATCCTGGTCTTTCGGGGCGGGGACGGCCGGGAATACTTGAACG
ATTTGCATGGCCTTCACGTAGACACCGGGCGGTGGGAAAGGCTGCGATGC
TCAGGGACGATTCCGGAAGCGCGCGCCAATCACTGCTCGGCTGTCTTAAA
TCGCCACCTCTTCATTTTCGGTGGGTGGAATGGACAGACGCGTTTGAACG
ACGTGCACGTATTAGACACCGACACGATGGTGTGGAGCCGCCTTGAGCCG
CGAGGTGTAGCGCCTCCGCCCCGCGCGGGTATGACCCTCACCCGCATCCG
GGACAGGCTCTACTTGTTCGGGGGCTCCGGCCCTGCAGCCAAGTGCTTCG
ACGATCTTCAGATCCTTGATCTCAAGGAGATGTGCTGGACGGAAATCACA
TCACGATCGAAAAGCGGTGGAGGTGGCAGTTCAGGAACAGCGCTGAGCAG
CGGGTCCGGAGTCGGGGAGGAAAGAGCAATTCCAGGTGCACACCTTGCTT
CCGCCGCAGAGAACAGCGGTCTTGAAAGATCGCGAGGGGGTGGTTGGGGC
GGAAATCAGGCCAACCCAAACGATGAGCATGTGACGGAGTCGGTCTCAAT
TTGGGGAGAAGGTCCTGGTCCTCGCGCTGGACACAGCGCAACCGTGCTCG
ATCGGCGCCTCGTCATTTTCGGTGGCTCTCACGGATCGCGCTACCTCGGT
GAGATGTTTGTGCTTGATACAGACCCCGTTCCAGAGCCCCTGGTCATCGC
TCCATCGTGCGCTCAGCTCATAGGGAGTCATTTACGACACTACCTCGATC
GGGAGGATTTCTCGGATGTGACGCTAATCGTTGAAAAGCGGCCTGTTCGG
GCGCACCGATTGGTCCTGTCCATAGCTAGCGATCGTTTCAAAGCAATGTT
TTCCTCAGGGTTCCGAGAGTCATCTGAACGGGAGGTGGAAGTAGAAGGCT
GTAGCTTTGAGGTCTTCAAGCTCATGTTGGGATACATCTACACCGGAGAG
CCCCCGAGCGCATTGCTTGTTGGCAGTCAGTCGGATCCTATATTGGCTGC
CGAACTCCTAGCGCTCGCGGATCAGTACATGTTGGACCACTTGAAGCAAT
TGTGCGAAGCTCGCCTCACAGAGGAGGTGAGGGAGGACACCGTCGACTCC
ATAATGGATTTGGCAGAAAGGAGCAATTCATGGCAGCTTCGTGCAGTCTG
TCGGCACTTTGTGCGAAATCGTGATGAGAGGCACGCGTCCTTCGCCTCGT
CTTTCTGAATGCACACGAGCGACTACCTGCCTCACCGGCGCCAGATCCTG
GTCTTTCGGGGCGGGGACGGCCGGGAATACTTGAACGATTTGCATGGCCT
TCACGTAGACACCGGGCGGTGGGAAAGGCTGCGATGCTCAGGGACGATTC
CGGAAGCGCGCGCCAATCACTGCTCGGCTGTCTTAAATCGCCACCTCTTC
ATTTTCGGTGGGTGGAATGGACAGACGCGTTTGAACGACGTGCACGTATT
AGACACCGACACGATGGTGTGGAGCCGCCTTGAGCCGCGAGGTGTAGCGC
CTCCGCCCCGCGCGGGTATGACCCTCACCCGCATCCGGGACAGGCTCTAC
TTGTTCGGGGGCTCCGGCCCTGCAGCCAAGTGCTTCGACGATCTTCAGAT
CCTTGATCTCAAGGAGATGTGCTG back to top
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