rna3949, rna3949 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3949
Unique Name	rna3949
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	249
Alignment location	CM002462.1:484222..487380 -

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, C2H2
Orig transcript id	gnl\|cribi\|Naga_100001g175.8182.mrna
Orig protein id	gnl\|cribi\|Naga_100001g175.8182
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:484222..487380 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g175	gene3800	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26671.1	cds3939	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3949	rna3949-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:484222..487380-
coding sequence from alignment at CM002462.1:484222..487380-

mRNA sequence

>rna3949 ID=rna3949|Name=rna3949|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGTATGAACTTGAAGAGACTACAGGTGAATACGGTCCCATCGAGGAGAA
CAAGCAGGAACTAGACATCAGAATCCAAGAGGAATCACATCTGATCAGGG
GCACGGAAAGATTTAAGAGTCTATCAAGTGCACGTGTTGTGTCGCTACAT
TCCATTCCTGGTACAATGATTGCGCGGAGACGAATCCGCGCGTCAGATAG
CGAGCGTCGAACACATGAAAACATATCACTGACTCATCTATCGATGTAA

protein sequence of rna3949

>rna3949-protein ID=rna3949-protein|Name=rna3949|organism=Nannochloropsis gaditana|type=polypeptide|length=1052bp
MNENCKSSCIAEGESPKLAEICSARVGNTRADSQNAKTAILGKDFQMGFS
EAQLQHVHGAGETLVESCRDSTRSYSMDSSDTSEHKADAELVLSFLTEMH
STGGTGQLSRGKCESTQPSQKTQKQPERTYFEEDSSAWATDGESLLLSLR
AKKPGIASSSSSSQLATPETVSKQGSFSSESISTLSAHYVKSPDKLITTS
KTDPGRKDSHVRGPASPVVECHGDDEDEDADAKIIVSFRHPSVSNASFSD
SGSGELAASSEEETDMWEDNATKPRSPRHPRADSASSWNLFNSLVNEAGN
GSRKLERQLTRTYECPWHRVGYYRRCHDKYGQDASIYDSEDSDYEEASII
EQRDSSSGCSRICGGSAREYGPYTSEFSSVRANMLNADKSADRAVAGGVP
KYHRDWGRLKRRGTMRQQQRLKREARGRIPPNYNNVTTHDRIGADAEEDM
EVRKHNSAGATNLGNLTAAAREFAVDPQRTASKKEKVASNSGGKSKNVHG
SSGSLKKSKITGQSAPKRQSTALTLSFEVQENGLIRCKRCGKPNFKNHFA
LRSHLSHCPGTIHMKEQRMKIEAGLLPPETPLCLPVDEDERQKGPSNAAW
VPAFNVSSSGSSLGASRSVSGSFSTEASDQPAPPTFQRADSNSRKTASED
QDRMHASTSCASKSDNRNFVRNVPFSDPLQQPPRDPTSSATANSAGTFSF
KHEIHTTNTSASSPPEPTSDLPVHEGTALVPAFIADGNSFVGRVVSYKNH
GARNYVDVYVRSYRSRRNCHFVVYPDTTSEWVILTDRNCRWDAGHRANLS
DASSSPIRPAAERKGILTSITESTHFGSGTPNTASPRSPPRNVFFSEQDA
LLLPRRPLKRKADSVRDEEASSTSFTTLSEERVARKGEKSDKIDTPKPKI
RRVDSNESLTASVGAPGPQHYHSHNPTLPYAQHIPHHSTGPPAYPYHVST
TGYTAAESYAMQLAQHTPASTFICRRCAKSFHNKQALGWHTRKGCYGHPG
TAITNNLPSPFPNSSVNTHSHAHYPPSTNYMYGSQASPVQSMHHAADQPY
SY

mRNA from alignment at CM002462.1:484222..487380-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3949 ID=rna3949|Name=rna3949|organism=Nannochloropsis gaditana|type=mRNA|length=3159bp|location=Sequence derived from alignment at CM002462.1:484222..487380- (Nannochloropsis gaditana)
ATGAACGAAAATTGCAAGTCTTCTTGCATAGCAGAGGGCGAATCCCCGAA
GCTTGCAGAGATATGTAGCGCACGAGTAGGTAATACGCGTGCGGACTCGC
AAAACGCAAAGACAGCGATTTTAGGCAAAGACTTTCAGATGGGGTTCTCT
GAAGCTCAACTGCAGCACGTGCATGGGGCAGGCGAGACATTGGTCGAGAG
TTGCCGGGACTCGACGCGGTCTTACTCGATGGACAGTTCTGACACGTCGG
AGCACAAGGCTGACGCGGAGCTTGTGCTCTCCTTCCTGACCGAGATGCAC
TCGACCGGTGGGACGGGGCAGCTAAGCAGAGGGAAATGTGAGAGTACGCA
ACCGTCCCAAAAGACTCAAAAACAACCAGAACGAACGTATTTTGAAGAAG
ACAGTAGCGCATGGGCTACTGACGGAGAGTCTCTGCTTCTTTCTCTCAGA
GCCAAAAAGCCCGGGATCGCGTCCTCGTCTTCTTCCTCACAGCTTGCAAC
TCCAGAGACAGTGAGTAAGCAAGGAAGTTTCTCCTCAGAGAGTATATCGA
CTTTATCAGCCCATTATGTAAAGTCTCCTGATAAGTTGATAACAACTTCG
AAGACCGACCCAGGGAGAAAAGATTCGCATGTACGGGGTCCAGCCAGTCC
AGTGGTGGAATGCCATGGCGACGACGAGGATGAAGATGCCGACGCCAAAA
TAATTGTTAGTTTCAGGCACCCATCAGTGTCAAATGCCTCTTTTTCGGAT
TCGGGTTCTGGCGAACTTGCTGCCTCTTCCGAGGAAGAGACAGACATGTG
GGAAGACAACGCGACCAAACCTCGGTCACCACGACATCCTAGAGCCGATT
CCGCCAGTTCCTGGAATCTTTTCAACAGTCTCGTCAATGAGGCAGGAAAC
GGTAGTCGTAAGCTTGAGCGGCAACTCACGCGCACCTATGAATGCCCTTG
GCATCGCGTGGGCTACTATCGACGTTGTCACGACAAGTATGGGCAAGATG
CATCCATTTACGATTCTGAGGATTCAGACTATGAAGAGGCCAGCATAATA
GAGCAACGGGATTCCAGTTCCGGATGCTCTCGAATTTGCGGGGGAAGTGC
TCGAGAATATGGGCCATATACTAGCGAGTTCTCCTCCGTGCGCGCAAATA
TGCTCAATGCAGACAAATCCGCTGACAGAGCCGTGGCCGGTGGCGTGCCC
AAGTACCATCGAGACTGGGGGAGGCTTAAACGACGCGGTACCATGCGCCA
ACAGCAACGACTGAAGAGAGAGGCCCGGGGTCGTATTCCTCCTAATTACA
ACAATGTGACGACCCACGACCGGATCGGGGCTGACGCTGAAGAAGATATG
GAAGTGCGAAAGCACAACAGCGCAGGCGCAACAAATCTCGGCAACCTTAC
AGCTGCGGCTCGTGAGTTTGCTGTTGATCCTCAACGCACCGCTTCCAAAA
AAGAGAAAGTGGCCTCAAATAGCGGTGGCAAGTCCAAAAATGTCCATGGC
AGCAGTGGCTCGCTCAAGAAGAGCAAAATCACTGGGCAATCCGCACCGAA
ACGTCAAAGTACCGCGCTTACCCTCTCATTTGAGGTGCAAGAGAATGGCC
TCATCCGCTGCAAACGCTGTGGTAAACCTAATTTCAAAAACCATTTTGCT
CTCCGCTCTCACCTGTCGCATTGCCCCGGTACCATCCACATGAAGGAGCA
ACGCATGAAGATTGAAGCCGGCCTTTTGCCACCTGAAACGCCTTTATGCC
TCCCTGTGGATGAAGATGAGCGGCAAAAGGGGCCTAGTAACGCAGCTTGG
GTACCTGCATTCAACGTATCAAGCAGTGGCAGCAGTTTGGGTGCCAGCCG
CTCCGTTTCCGGAAGTTTTTCCACCGAGGCGAGCGACCAACCCGCTCCTC
CTACCTTCCAGAGGGCCGACAGCAACAGTCGTAAGACGGCAAGTGAAGAT
CAGGACAGGATGCATGCCTCAACTTCATGTGCGTCAAAATCTGATAACAG
GAATTTCGTTCGGAATGTACCCTTTTCTGATCCACTGCAGCAGCCACCTC
GCGACCCGACAAGTTCAGCCACGGCCAACTCCGCCGGCACGTTCTCCTTC
AAACATGAGATACATACGACAAATACCTCTGCTTCATCTCCACCGGAACC
AACGAGCGATTTACCGGTGCACGAAGGGACAGCTTTGGTGCCTGCTTTCA
TAGCGGACGGTAATTCTTTCGTGGGCCGAGTAGTCTCCTACAAAAATCAT
GGCGCGCGCAACTATGTGGACGTTTACGTGCGGAGCTACCGATCACGGCG
AAACTGTCATTTTGTCGTCTATCCGGATACCACATCCGAATGGGTCATCC
TTACTGACCGAAACTGTCGATGGGACGCTGGTCATCGAGCTAACCTCTCC
GACGCTTCTTCCTCACCGATTCGTCCCGCCGCCGAAAGGAAGGGCATTCT
GACAAGCATTACCGAGTCCACGCACTTTGGAAGCGGCACTCCTAATACTG
CAAGCCCTCGCTCTCCTCCGCGAAATGTATTTTTCAGCGAGCAGGATGCT
CTTCTCCTTCCTCGTCGCCCGCTCAAGCGCAAGGCTGATTCAGTGCGAGA
CGAGGAGGCTTCCAGTACGTCTTTCACCACATTGTCGGAGGAACGTGTGG
CGAGAAAGGGCGAAAAAAGTGATAAAATTGATACGCCCAAGCCGAAAATT
AGGCGTGTCGATAGCAATGAAAGTTTGACAGCAAGCGTGGGGGCACCGGG
CCCGCAACACTATCACTCTCACAATCCAACTCTGCCCTATGCCCAGCACA
TACCTCACCACTCTACTGGTCCTCCTGCCTACCCCTACCACGTCTCCACC
ACCGGCTATACCGCTGCAGAATCCTATGCAATGCAGCTCGCTCAACACAC
ACCAGCCTCCACCTTTATTTGTCGGCGCTGCGCAAAGAGCTTCCATAACA
AGCAAGCTCTGGGCTGGCACACTCGCAAAGGGTGCTATGGGCATCCAGGC
ACGGCCATTACCAATAATTTGCCCTCTCCATTTCCTAATTCATCCGTGAA
TACTCACTCCCATGCTCATTACCCGCCATCAACGAATTACATGTATGGTT
CGCAGGCCTCGCCTGTGCAATCCATGCACCATGCTGCTGACCAGCCCTAT
TCTTACTAG

Coding sequence (CDS) from alignment at CM002462.1:484222..487380-

>rna3949 ID=rna3949|Name=rna3949|organism=Nannochloropsis gaditana|type=CDS|length=3159bp|location=Sequence derived from alignment at CM002462.1:484222..487380- (Nannochloropsis gaditana)
ATGAACGAAAATTGCAAGTCTTCTTGCATAGCAGAGGGCGAATCCCCGAA
GCTTGCAGAGATATGTAGCGCACGAGTAGGTAATACGCGTGCGGACTCGC
AAAACGCAAAGACAGCGATTTTAGGCAAAGACTTTCAGATGGGGTTCTCT
GAAGCTCAACTGCAGCACGTGCATGGGGCAGGCGAGACATTGGTCGAGAG
TTGCCGGGACTCGACGCGGTCTTACTCGATGGACAGTTCTGACACGTCGG
AGCACAAGGCTGACGCGGAGCTTGTGCTCTCCTTCCTGACCGAGATGCAC
TCGACCGGTGGGACGGGGCAGCTAAGCAGAGGGAAATGTGAGAGTACGCA
ACCGTCCCAAAAGACTCAAAAACAACCAGAACGAACGTATTTTGAAGAAG
ACAGTAGCGCATGGGCTACTGACGGAGAGTCTCTGCTTCTTTCTCTCAGA
GCCAAAAAGCCCGGGATCGCGTCCTCGTCTTCTTCCTCACAGCTTGCAAC
TCCAGAGACAGTGAGTAAGCAAGGAAGTTTCTCCTCAGAGAGTATATCGA
CTTTATCAGCCCATTATGTAAAGTCTCCTGATAAGTTGATAACAACTTCG
AAGACCGACCCAGGGAGAAAAGATTCGCATGTACGGGGTCCAGCCAGTCC
AGTGGTGGAATGCCATGGCGACGACGAGGATGAAGATGCCGACGCCAAAA
TAATTGTTAGTTTCAGGCACCCATCAGTGTCAAATGCCTCTTTTTCGGAT
TCGGGTTCTGGCGAACTTGCTGCCTCTTCCGAGGAAGAGACAGACATGTG
GGAAGACAACGCGACCAAACCTCGGTCACCACGACATCCTAGAGCCGATT
CCGCCAGTTCCTGGAATCTTTTCAACAGTCTCGTCAATGAGGCAGGAAAC
GGTAGTCGTAAGCTTGAGCGGCAACTCACGCGCACCTATGAATGCCCTTG
GCATCGCGTGGGCTACTATCGACGTTGTCACGACAAGTATGGGCAAGATG
CATCCATTTACGATTCTGAGGATTCAGACTATGAAGAGGCCAGCATAATA
GAGCAACGGGATTCCAGTTCCGGATGCTCTCGAATTTGCGGGGGAAGTGC
TCGAGAATATGGGCCATATACTAGCGAGTTCTCCTCCGTGCGCGCAAATA
TGCTCAATGCAGACAAATCCGCTGACAGAGCCGTGGCCGGTGGCGTGCCC
AAGTACCATCGAGACTGGGGGAGGCTTAAACGACGCGGTACCATGCGCCA
ACAGCAACGACTGAAGAGAGAGGCCCGGGGTCGTATTCCTCCTAATTACA
ACAATGTGACGACCCACGACCGGATCGGGGCTGACGCTGAAGAAGATATG
GAAGTGCGAAAGCACAACAGCGCAGGCGCAACAAATCTCGGCAACCTTAC
AGCTGCGGCTCGTGAGTTTGCTGTTGATCCTCAACGCACCGCTTCCAAAA
AAGAGAAAGTGGCCTCAAATAGCGGTGGCAAGTCCAAAAATGTCCATGGC
AGCAGTGGCTCGCTCAAGAAGAGCAAAATCACTGGGCAATCCGCACCGAA
ACGTCAAAGTACCGCGCTTACCCTCTCATTTGAGGTGCAAGAGAATGGCC
TCATCCGCTGCAAACGCTGTGGTAAACCTAATTTCAAAAACCATTTTGCT
CTCCGCTCTCACCTGTCGCATTGCCCCGGTACCATCCACATGAAGGAGCA
ACGCATGAAGATTGAAGCCGGCCTTTTGCCACCTGAAACGCCTTTATGCC
TCCCTGTGGATGAAGATGAGCGGCAAAAGGGGCCTAGTAACGCAGCTTGG
GTACCTGCATTCAACGTATCAAGCAGTGGCAGCAGTTTGGGTGCCAGCCG
CTCCGTTTCCGGAAGTTTTTCCACCGAGGCGAGCGACCAACCCGCTCCTC
CTACCTTCCAGAGGGCCGACAGCAACAGTCGTAAGACGGCAAGTGAAGAT
CAGGACAGGATGCATGCCTCAACTTCATGTGCGTCAAAATCTGATAACAG
GAATTTCGTTCGGAATGTACCCTTTTCTGATCCACTGCAGCAGCCACCTC
GCGACCCGACAAGTTCAGCCACGGCCAACTCCGCCGGCACGTTCTCCTTC
AAACATGAGATACATACGACAAATACCTCTGCTTCATCTCCACCGGAACC
AACGAGCGATTTACCGGTGCACGAAGGGACAGCTTTGGTGCCTGCTTTCA
TAGCGGACGGTAATTCTTTCGTGGGCCGAGTAGTCTCCTACAAAAATCAT
GGCGCGCGCAACTATGTGGACGTTTACGTGCGGAGCTACCGATCACGGCG
AAACTGTCATTTTGTCGTCTATCCGGATACCACATCCGAATGGGTCATCC
TTACTGACCGAAACTGTCGATGGGACGCTGGTCATCGAGCTAACCTCTCC
GACGCTTCTTCCTCACCGATTCGTCCCGCCGCCGAAAGGAAGGGCATTCT
GACAAGCATTACCGAGTCCACGCACTTTGGAAGCGGCACTCCTAATACTG
CAAGCCCTCGCTCTCCTCCGCGAAATGTATTTTTCAGCGAGCAGGATGCT
CTTCTCCTTCCTCGTCGCCCGCTCAAGCGCAAGGCTGATTCAGTGCGAGA
CGAGGAGGCTTCCAGTACGTCTTTCACCACATTGTCGGAGGAACGTGTGG
CGAGAAAGGGCGAAAAAAGTGATAAAATTGATACGCCCAAGCCGAAAATT
AGGCGTGTCGATAGCAATGAAAGTTTGACAGCAAGCGTGGGGGCACCGGG
CCCGCAACACTATCACTCTCACAATCCAACTCTGCCCTATGCCCAGCACA
TACCTCACCACTCTACTGGTCCTCCTGCCTACCCCTACCACGTCTCCACC
ACCGGCTATACCGCTGCAGAATCCTATGCAATGCAGCTCGCTCAACACAC
ACCAGCCTCCACCTTTATTTGTCGGCGCTGCGCAAAGAGCTTCCATAACA
AGCAAGCTCTGGGCTGGCACACTCGCAAAGGGTGCTATGGGCATCCAGGC
ACGGCCATTACCAATAATTTGCCCTCTCCATTTCCTAATTCATCCGTGAA
TACTCACTCCCATGCTCATTACCCGCCATCAACGAATTACATGTATGGTT
CGCAGGCCTCGCCTGTGCAATCCATGCACCATGCTGCTGACCAGCCCTAT
TCTTACTAG

Synonyms

Publications