|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100001g176.8196.mrna |
| Orig protein id | gnl|cribi|Naga_100001g176.8196 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:483532..483858 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3948 ID=rna3948|Name=rna3948|organism=Nannochloropsis gaditana|type=mRNA|length=5143bp
TGTCTCACCCATGGAGACACGTTCCCATCTTTGAATTTGTATGGTAATTT
AAAGATATTTGAAACCGCACCAACAGGATGGCGCAGACGCCTGAGCTTTC
ACAGCATCAGCATACGTCTTTGACGCTGTCAGTAATGACAACAGTTCTGG
ACCAGAATGAAGACATCCTGCTTGCCATTTCTGAAAGTCAGCGGTTGGGT
GAAAACGTGCGGGCTGCAAAGTACCAACGACAGCTACAGGAGAACCTCTT
GGTTTTGACGCAGCTTTGTGACAGTCAAGAATACTACCCGAAGTCTTTTC
GGGAAATGGCCTTGAAAAAGCTGCCTCGGCAGAGGAAAATCGCTACTGAG
ATGCCTGTTCCTTCCATGGATGTCCTACATTGTGTCGACGGAGCAAATAT
AACCCACAGACAAGCCCAGCAACGTGTATCTCCGCTGTGCCGTCAGCCTC
AAGCCTTTCAGGAGCAGCAAAAATCTTGTCTTGGCGCTAGAAATGACACT
TCATGCAACAAGTCAGCACTTTCCCCGTCTGTCATTGATGGTGATCACAT
TTCATTGCAAAGATTGCACACGGCACAACCTTTAAGTATGTCAGACGCTG
CTGATCCGCTCTCGATGGACAGGCACAAAGCACAATTGACTTTGCAAAGC
CAGTCACTTAATACCGGAGGAGGAGAGATGCTGAAGATGGCACAAGCCTC
ACCGCAGGACGATGCAATGCAGTTGATGCAGCAGCATATTCTGCACCAGC
AGCAGATGTTACAGCAACACCAACAACATTATCAGGCCATAATTCATCAG
CAGGAGCTGTTGGATGAGCGACAACGGGAACGGATAGAGCAAGGAGATTC
AGAGGTATTGGCGAAGAAGAGCTTGTCTTCCTGCTCGGGTGCGAACGCAG
GCGATGCGACACCACGTGGAGGGAGATCGGCTCTTGTGCAGACACCGCTT
GGACTGATGAAGGTGCAGCTCGTAGGCAACAACGTACAGGAAGCGATGAA
TTTGCCAGTGGTAGGACAGATGAATTTCGACCCGTCATTGCTGCAGTCTG
TCTTCCGTACACCCGAGCAAAGTCTTCAAATGACACAGGCGCAAGCTCAG
GGTCTTCAGGCTCAGATACAGTCACAGCAGCAGCCCTGGTACCATCCACA
ACACTCGCAAGGCGGGTTCCAACAACTTGACGTACTACACAACCCTTCAC
AAAACCCACAATCAATTTTGAATCCTCTTCCTTCACTTCCCTCTTTTTCT
ACTCCTGCCGATGTGGCGCCACAATCCGTCACCAATCCTTCTTCCATAAC
CGGCAATAATTATCTCGACCACATCACTAGTCTCGTGCGAAAAAACGTCC
GTGGTACCTATTGGAGCTCAATTGAGGAAGGCCGCTTATTGCACGCTGTC
CAGTTATACGGAGAATCAGACTTCGAACAGATCGCCCAATTTGTGGGTAC
CAAATCTCGGACTCAGGTTCGAATTCGCCTGAGGAAACACGCGGAGGGAT
CTCTTCCCATCATGGCACGTTCTCCTCTTCAGCCAATCGGGGCATCATTT
GGGTAGACCGCTATGGATATCGCATCAAGTACGCAAAGGGAAATGTTTGT
GGCAGGATGGAAGTTGGCGAAAAGTACACATGATACGCGAGGACGAACCC
TATGAGTCAGTGATATGTTTTCATGTGTTCGACGCTCGCTATCTGACGCG
CGGATTCGTCTCCGCGCAATCATTGTACCAGGAATGGAATGTAGCGACAC
AACACGTGCACTTGATAGACTCTTAAATCTTTCCGTGCCCCTGATCAGAT
GTGATTCCTCCTACCAAATCCGCATGATCGCGTCTGTGTGCTTTCGATCA
TCGATTGCCGGTCAACGTGGAGACATATATAGGCTTACTTGGATTCTGAT
GTCTAGTTCCTGCTTGTTCTCCTCGATGGGACCGTATTCACCTGTAGTCT
CTTCAAGTTCATACATGCAACATTTTTCTGCGTCGGTGCTTTTCCCATGA
AGGTCCTTTTCTTTTCTGAATGACGTGAAGCCGCCGCCGCTTTCACGGGG
TTCATAAGTGTGCACTGCTTTTCCATATGTGATATTACGCGTATCTGCCT
AAGTGAACCCTCTCCTCTGCAATCGTCCCGAGACCCCGCCTCTCTATTGT
GGTGTTTTGACCCTCTACAATGTGTGGATCTAGCCACACAGTATGTATAA
TATGAAAATAGAGTACCTTTCGTTTGCTTTCTGTCCTTCACATACATACA
CATACACGAACGTAATTATGCAATAATGATCCAAATATGGCTTGTATACT
ACTCCAACATGCTCAATCCGAAAACCAGGCTAGTAAGAATAGGGCTGGTC
AGCAGCATGGTGCATGGATTGCACAGGCGAGGCCTGCGAACCATACATGT
AATTCGTTGATGGCGGGTAATGAGCATGGGAGTGAGTATTCACGGATGAA
TTAGGAAATGGAGAGGGCAAATTATTGGTAATGGCCGTGCCTGGATGCCC
ATAGCACCCTTTGCGAGTGTGCCAGCCCAGAGCTTGCTTGTTATGGAAGC
TCTTTGCGCAGCGCCGACAAATAAAGGTGGAGGCTGGTGTGTGTTGAGCG
AGCTGCATTGCATAGGATTCTGCAGCGGTATAGCCGGTGGTGGAGACGTG
GTAGGGGTAGGCAGGAGGACCAGTAGAGTGGTGAGGTATGTGCTGGGCAT
AGGGCAGAGTTGGATTGTGAGAGTGATAGTGTTGCGGGCCCGGTGCCCCC
ACGCTTGCTGTCAAACTTTCATTGCTATCGACACGCCTAATTTTCGGCTT
GGGCGTATCAATTTTATCACTTTTTTCGCCCTTTCTCGCCACACGTTCCT
CCGACAATGTGGTGAAAGACGTACTGGAAGCCTCCTCGTCTCGCACTGAA
TCAGCCTTGCGCTTGAGCGGGCGACGAGGAAGGAGAAGAGCATCCTGCTC
GCTGAAAAATACATTTCGCGGAGGAGAGCGAGGGCTTGCAGTATTAGGAG
TGCCGCTTCCAAAGTGCGTGGACTCGGTAATGCTTGTCAGAATGCCCTTC
CTTTCGGCGGCGGGACGAATCGGTGAGGAAGAAGCGTCGGAGAGGTTAGC
TCGATGACCAGCGTCCCATCGACAGTTTCGGTCAGTAAGGATGACCCATT
CGGATGTGGTATCCGGATAGACGACAAAATGACAGTTTCGCCGTGATCGG
TAGCTCCGCACGTAAACGTCCACATAGTTGCGCGCGCCATGATTTTTGTA
GGAGACTACTCGGCCCACGAAAGAATTACCGTCCGCTATGAAAGCAGGCA
CCAAAGCTGTCCCTTCGTGCACCGGTAAATCGCTCGTTGGTTCCGGTGGA
GATGAAGCAGAGGTATTTGTCGTATGTATCTCATGTTTGAAGGAGAACGT
GCCGGCGGAGTTGGCCGTGGCTGAACTTGTCGGGTCGCGAGGTGGCTGCT
GCAGTGGATCAGAAAAGGGTACATTCCGAACGAAATTCCTGTTATCAGAT
TTTGACGCACATGAAGTTGAGGCATGCATCCTGTCCTGATCTTCACTTGC
CGTCTTACGACTGTTGCTGTCGGCCCTCTGGAAGGTAGGAGGAGCGGGTT
GGTCGCTCGCCTCGGTGGAAAAACTTCCGGAAACGGAGCGGCTGGCACCC
AAACTGCTGCCACTGCTTGATACGTTGAATGCAGGTACCCAAGCTGCGTT
ACTAGGCCCCTTTTGCCGCTCATCTTCATCCACAGGGAGGCATAAAGGCG
TTTCAGGTGGCAAAAGGCCGGCTTCAATCTTCATGCGTTGCTCCTTCATG
TGGATGGTACCGGGGCAATGCGACAGGTGAGAGCGGAGAGCAAAATGGTT
TTTGAAATTAGGTTTACCACAGCGTTTGCAGCGGATGAGGCCATTCTCTT
GCACCTCAAATGAGAGGGTAAGCGCGGTACTTTGACGTTTCGGTGCGGAT
TGCCCAGTGATTTTGCTCTTCTTGAGCGAGCCACTGCTGCCATGGACATT
TTTGGACTTGCCACCGCTATTTGAGGCCACTTTCTCTTTTTTGGAAGCGG
TGCGTTGAGGATCAACAGCAAACTCACGAGCCGCAGCTGTAAGGTTGCCG
AGATTTGTTGCGCCTGCGCTGTTGTGCTTTCGCACTTCCATATCTTCTTC
AGCGTCAGCCCCGATCCGGTCGTGGGTCGTCACATTGTTGTAATTAGGAG
GAATACGACCCCGGGCCTCTCTCTTCAGTCGTTGCTGTTGGCGCATGGTA
CCGCGTCGTTTAAGCCTCCCCCAGTCTCGATGGTACTTGGGCACGCCACC
GGCCACGGCTCTGTCAGCGGATTTGTCTGCATTGAGCATATTTGCGCGCA
CGGAGGAGAACTCGCTAGTATATGGCCCATATTCTCGAGCACTTCCCCCG
CAAATTCGAGAGCATCCGGAACTGGAATCCCGTTGCTCTATTATGCTGGC
CTCTTCATAGTCTGAATCCTCAGAATCGTAAATGGATGCATCTTGCCCAT
ACTTGTCGTGACAACGTCGATAGTAGCCCACGCGATGCCAAGGGCATTCA
TAGGTGCGCGTGAGTTGCCGCTCAAGCTTACGACTACCGTTTCCTGCCTC
ATTGACGAGACTGTTGAAAAGATTCCAGGAACTGGCGGAATCGGCTCTAG
GATGTCGTGGTGACCGAGGTTTGGTCGCGTTGTCTTCCCACATGTCTGTC
TCTTCCTCGGAAGAGGCAGCAAGTTCGCCAGAACCCGAATCCGAAAAAGA
GGCATTTGACACTGATGGGTGCCTGAAACTAACAATTATTTTGGCGTCGG
CATCTTCATCCTCGTCGTCGCCATGGCATTCCACCACTGGACTGGCTGGA
CCCCGTACATGCGAATCTTTTCTCCCTGGGTCGGTCTTCGAAGTTGTTAT
CAACTTATCAGGAGACTTTACATAATGGGCTGATAAAGTCGATATACTCT
CTGAGGAGAAACTTCCTTGCTTACTCACTGTCTCTGGAGTTGCAAGCTGT
GAGGAAGAAGACGAGGACGCGATCCCGGGCTTTTTGGCTCTGAGAGAAAG
AAGCAGAGACTCTCCGTCAGTAGCCCATGCGCTACTGTCTTCTTCAAAAT
ACGTTCGTTCTGGTTGTTTTTGAGTCTTTTGGGACGGTTGCGT back to topprotein sequence of rna3948 >rna3948-protein ID=rna3948-protein|Name=rna3948|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MYELEETTGEYGPIEENKQELDIRIQEESHLIRGTERFKSLSSARVVSLH
SIPGTMIARRRIRASDSERRTHENISLTHLSM back to topmRNA from alignment at CM002462.1:483532..483858- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3948 ID=rna3948|Name=rna3948|organism=Nannochloropsis gaditana|type=mRNA|length=327bp|location=Sequence derived from alignment at CM002462.1:483532..483858- (Nannochloropsis gaditana)
ATGTATGAACTTGAAGAGACTACAGGTGAATACGGTCCCATCGAGGAGAA
CAAGCAGGAACTAGACATCAGAATCCAAGTAAGCCTATATATGTCTCCAC
GTTGACCGGCAATCGATGATCGAAAGCACACAGACGCGATCATGCGGATT
TGGTAGGAGGAATCACATCTGATCAGGGGCACGGAAAGATTTAAGAGTCT
ATCAAGTGCACGTGTTGTGTCGCTACATTCCATTCCTGGTACAATGATTG
CGCGGAGACGAATCCGCGCGTCAGATAGCGAGCGTCGAACACATGAAAAC
ATATCACTGACTCATCTATCGATGTAA back to topCoding sequence (CDS) from alignment at CM002462.1:483532..483858- >rna3948 ID=rna3948|Name=rna3948|organism=Nannochloropsis gaditana|type=CDS|length=498bp|location=Sequence derived from alignment at CM002462.1:483532..483858- (Nannochloropsis gaditana)
GAGGAATCACATCTGATCAGGGGCACGGAAAGATTTAAGAGTCTATCAAG
TGCACGTGTTGTGTCGCTACATTCCATTCCTGGTACAATGATTGCGCGGA
GACGAATCCGCGCGTCAGATAGCGAGCGTCGAACACATGAAAACATATCA
CTGACTCATCTATCGATGTAAATGTATGAACTTGAAGAGACTACAGGTGA
ATACGGTCCCATCGAGGAGAACAAGCAGGAACTAGACATCAGAATCCAAG
AGGAATCACATCTGATCAGGGGCACGGAAAGATTTAAGAGTCTATCAAGT
GCACGTGTTGTGTCGCTACATTCCATTCCTGGTACAATGATTGCGCGGAG
ACGAATCCGCGCGTCAGATAGCGAGCGTCGAACACATGAAAACATATCAC
TGACTCATCTATCGATGTAAATGTATGAACTTGAAGAGACTACAGGTGAA
TACGGTCCCATCGAGGAGAACAAGCAGGAACTAGACATCAGAATCCAA back to top
|