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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100001g178.8262.mrna |
| Orig protein id | gnl|cribi|Naga_100001g178.8262 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:479141..481144 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3946 ID=rna3946|Name=rna3946|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp
ATGGCAACGAGTGCGACAAAGATGTCAAGATACGAGTTGCTGGTTCGAAA
ATTGTATCAGGTGAACATGTATTGCGCAGCTAAGCTCGGTCTCGATAACA
TTCAAGCGCTACACCAGGCGATCGGGAGGCCCCTTCAGAGGGTCCCGAAC
ATCGTGCATGTTGGCGGGACTAATGGCAAAGGCTCGGTCGCCTTCAAACT
GGCAAAATGCTTGGAGTACTCCAACATTCGCACCGGCCTTTTCGTCTCCC
CGCACATAGCAAGTTTTCGGGAGCGTATGCAGGTGAATGGCGAGCTCATA
AGCGAGGCCGAAGTCGAGACCCTTTTAAGTGAGATTATGGAAGTCCGCGG
GGCTCAAGCTATTCCCGCCACTTTCTTTGAGATAACTACTGCACTAGCTT
TCAGCTTTTTTGCTCGGCGTGAATTGGGAGCTGCAGTCGTGGAAGTCGGG
CTGGGTGGACGCCTGGACGCCACTAACATTATCGAGAAGCCGCGCCTCGC
TGTTCTCACCTCTATCGGTCTTGAGCACACAAAAATTCTTGGCTCTAGCA
TTGAAGCTATAGCCCGCGAAAAAGCCGGTATAATCAAGCCAGGCGTGCCC
ATCATCCTCGGACCTCATGTCCCGCACGACTTCTTGGGGGCCATCGCGGC
CGAGCGCCAGTCTCCAGTCCTGCTGGTGCCGAAGGGACCCTACCCTAATT
TCGAGGAAGAAAATACGGCCATCGCTCGAACAGCTCTCGAATATCTGCGC
ACATCCCAGCCTGCCCTTCCCTGGCGGGAGGGCCCGGAGGGGGACCTCGC
ACTCGCTCGCGGCCTGCGGAGCCGACCGCCCTGTCGCTTCCAGGAGATGG
AGCGGCGGGTGGGGAACCGCAGCGTGCGCGTGGTGTTGGACGTGGGCCAC
AATCCCCCAGCACTCCGTCGCCTTTTTGAGCGTCTTCTCTCGCCGACAAA
GAGCGAGCTTCAGGCACGAGGAGCACAGGCGCCCCCCGCGTGGAAGGAAC
CCGTCGTCAGACTGGTCCTGGGCCTTTCCGCCGACAAGGACATCCGCGAG
TGCCTGCAGACCGTCCTCGCATTCGTGCCTCCTCCACGTCTGCACATCAT
CCAAGCGCGTCACCCCCGTGCGGCAACGCCAATGGCCTTGGTAGAAGCAG
CTGCCGCCTTAGGCGCCTCGCTCCCGTCGGGGAACTACGGCTACGCCTCT
GTCCAGGAGGGTATTGACACTGCCTTGCAGGCCGCCGCAGTGTCTTTCAC
TAAACGTGCAGAATCTGACAACCTGGAAATGGATGAAAATACGAAGAACG
AGGCCCAGGAGACAGTTGTAGTGTGCGGATCCTTCTTTATCATGGGGGAG
GTGCGGAGGGCCCTAGGTATCAAAGAGCCGCAAGACTCGGCAGTGATTTC
GGAAGTGGCGGGTGCTCAGTTCTCAGCTGCGCAAGAAGTCTTTTTAAATC
AATCATCGTGTCAAAATGGCAATGCTGGCTAA back to topprotein sequence of rna3946 >rna3946-protein ID=rna3946-protein|Name=rna3946|organism=Nannochloropsis gaditana|type=polypeptide|length=546bp
MSSNKGRKATWPRILRCSERTARPPQKIDSSQMECEASVDELRRLEGYHA
FMNEILLSGAVGSLSNGDSDVFSPLTPQAVIDDPISLSRAAEKLVLNTIA
SRHANLYLLHSPSIASNILGHGGNLLPLFLTSWSMDERGQPRIKRIPVAM
QQDEIERMEEEGDSTALGLNIALREEGPLLLGGVSLVARILDRKGQVLGL
VEVTIDKAPEDFDGDIFPQAQVSALDSVQDELASVLLLLRLVLLRSQRED
PLLAPCVNQAGDPAASGIVSPSTRRIQASSALGNPPVNRFSENTSFPRKA
HFDSGDKFDGEALAPSIGFAGELAQQPPERGELNALRQKYLKAKSYIRRL
ERGLRLKTRSEGRALLARQATEGAERLFARTEELQALITELSGRQEQLRL
ENETLRAAKVKALDAANAASSQEAEARTQFESLARTHARSEDELRTRVYQ
LDSESRAMRANAVRYEAEKNALIRDKERLERDLLRCQKKLKDSQQAVKQA
RDYQEISQAELWDLKESLERMEAGTNELRQHFQYSQNYDGGDPIPS back to topmRNA from alignment at CM002462.1:479141..481144+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3946 ID=rna3946|Name=rna3946|organism=Nannochloropsis gaditana|type=mRNA|length=2004bp|location=Sequence derived from alignment at CM002462.1:479141..481144+ (Nannochloropsis gaditana)
CCCGCGACTGTATGCAAGAcggtctcttttcctcctgcctttggcCGTAC
TCGGCAGGATCCCGGGAGGTACCTGCCCGCGATTGTCTCATCCAAGTCCC
TTGCTGCTCAATACTTCCAGACATCTCCAGGGATCTCCAATTGGGTTTCT
CGTCCCGCTCGCCCGAGTCGCCAAGGTCTAGcttcgcctcttcctcgcgg
CACCAGGAGAAATCCGACGCGTGGCTACTTCACTTCTGAGAGGGCCGTCT
TGTTACCGGGGGAAAATATCCATGTCATCGAACAAGGGACGAAAAGCAAC
GTGGCCACGGATACTGCGGTGCTCTGAGAGAACCGCGCGTCCACCACAAA
AAATCGACAGCAGTCAGATGGAATGCGAGGCCTCAGTTGATGAATTGCGG
CGCTTAGAAGGCTACCATGCGTTCATGAACGAGATCTTGCTCAGTGGAGC
AGTGGGATCGCTATCAAATGGAGATTCGGACGTATTTTCACCCCTAACGC
CGCAAGCTGTGATCGACGACCCAATTTCGTTAAGTCGTGCAGCGGAAAAA
CTCGTTTTGAACACTATCGCAAGCCGACACGCCAACTTGTACCTGCTTCA
TAGCCCAAGCATTGCGTCGAACATCCTTGGTCACGGAGGCAATCTGCTTC
CTTTGTTTCTCACCAGCTGGTCTATGGACGAGAGGGGTCAGCCCCGTATT
AAGCGCATTCCTGTGGCGATGCAACAAGACGAAATTGagcgcatggagga
ggagggcgactcGACCGCTTTGGGTCTTAACATTGCACTTCGTGAGGAAG
GGCCTCTGTTGCTCGGAGGTGTGTCTTTAGTGGCACGAATACTCGACCGT
AAGGGTCAAGTGCTCGGCTTAGTTGAAGTAACTATTGATAAGGCCCCTGA
GGACTTCGATGGAGACATCTTCCCTCAGGCTCAAGTCTCCGCACTGGACA
GCGTCCAGGATGAGCTGGCCTCCGTTCTTTtgcttctccgcctcgtcttG
CTGCGAAGCCAAAGAGAAGACCCTTTGCTCGCTCCTTGCGTCAATCAGGC
CGGAGATCCGGCGGCGTCAGGAATTGTTTCCCCGAGCACACGTCGCATCC
AAGCGAGCTCCGCTCTTGGTAACCCTCCTGTGAATCGTTTTAGTGAAAAC
ACTTCATTTCCTCGAAAAGCTCATTTTGACTCTGGTGACAAATTCGACGG
CGAAGCGCTCGCGCCATCGATAGGTTTTGCCGGAGAGTTGGCGCAACAGC
CgccagaaagaggggaaCTGAACGCACTGCGACAGAAATATCTCAAGGCC
AAGAGCTATATCCGGCGCCTGGAAAGGGGTTTGAGGCTAAAGACTCGGTC
GGAAGGTCGAGCCTTGCTGGCCCGACAGGCGACCGAGGGGGCCGAGCGCC
TGTTTGCGAGAACGGAGGAATTGCAGGCCCTTATCACGGAACTCTCGGGG
AGGCAAGAACAGCTGCGACTAGAGAATGAGACGCTTCGTGCAGCCAAAGT
GAAAGCTTTAGATGCAGCCAACGCAGCTTCTTCCCAAGAAGCCGAAGCCC
GCACTCAATTTGAGTCGCTGGCAAGGACACATGCACGCTCCGAAGACGAG
CTGCGCACCCGAGTATACCAGCTGGACAGCGAGAGCCGTGCTATGAGGGC
CAATGCTGTGCGATACGAAGCCGAAAAGAATGCTTTAATACGCGACAAGG
AGAGGCTCGAACGTGATTTGTTGCGGTGTCAGAAGAAACTAAAAGATAGC
CAACAAGCTGTCAAGCAGGCGCGGGATTATCAGGAGATATCCCAGGCTGA
ACTCTGGGACTTGAAGGAGAGCTTGGAACGTATGGAGGCCGGGACGAATG
AGTTGCGGCAACATTTTCAATACTCGCAAAATTATGATGGCGGCGATCCG
ATTCCATCGTAGAAacgaaagggaagaaagaaattgCAATATAATCTTGC
TGCACGCCAATCTTATTCCAGTCACTATTCTGTCTAAAGCTACATGCTTC
TTCA back to topCoding sequence (CDS) from alignment at CM002462.1:479141..481144+ >rna3946 ID=rna3946|Name=rna3946|organism=Nannochloropsis gaditana|type=CDS|length=1641bp|location=Sequence derived from alignment at CM002462.1:479141..481144+ (Nannochloropsis gaditana)
ATGTCATCGAACAAGGGACGAAAAGCAACGTGGCCACGGATACTGCGGTG
CTCTGAGAGAACCGCGCGTCCACCACAAAAAATCGACAGCAGTCAGATGG
AATGCGAGGCCTCAGTTGATGAATTGCGGCGCTTAGAAGGCTACCATGCG
TTCATGAACGAGATCTTGCTCAGTGGAGCAGTGGGATCGCTATCAAATGG
AGATTCGGACGTATTTTCACCCCTAACGCCGCAAGCTGTGATCGACGACC
CAATTTCGTTAAGTCGTGCAGCGGAAAAACTCGTTTTGAACACTATCGCA
AGCCGACACGCCAACTTGTACCTGCTTCATAGCCCAAGCATTGCGTCGAA
CATCCTTGGTCACGGAGGCAATCTGCTTCCTTTGTTTCTCACCAGCTGGT
CTATGGACGAGAGGGGTCAGCCCCGTATTAAGCGCATTCCTGTGGCGATG
CAACAAGACGAAATTGagcgcatggaggaggagggcgactcGACCGCTTT
GGGTCTTAACATTGCACTTCGTGAGGAAGGGCCTCTGTTGCTCGGAGGTG
TGTCTTTAGTGGCACGAATACTCGACCGTAAGGGTCAAGTGCTCGGCTTA
GTTGAAGTAACTATTGATAAGGCCCCTGAGGACTTCGATGGAGACATCTT
CCCTCAGGCTCAAGTCTCCGCACTGGACAGCGTCCAGGATGAGCTGGCCT
CCGTTCTTTtgcttctccgcctcgtcttGCTGCGAAGCCAAAGAGAAGAC
CCTTTGCTCGCTCCTTGCGTCAATCAGGCCGGAGATCCGGCGGCGTCAGG
AATTGTTTCCCCGAGCACACGTCGCATCCAAGCGAGCTCCGCTCTTGGTA
ACCCTCCTGTGAATCGTTTTAGTGAAAACACTTCATTTCCTCGAAAAGCT
CATTTTGACTCTGGTGACAAATTCGACGGCGAAGCGCTCGCGCCATCGAT
AGGTTTTGCCGGAGAGTTGGCGCAACAGCCgccagaaagaggggaaCTGA
ACGCACTGCGACAGAAATATCTCAAGGCCAAGAGCTATATCCGGCGCCTG
GAAAGGGGTTTGAGGCTAAAGACTCGGTCGGAAGGTCGAGCCTTGCTGGC
CCGACAGGCGACCGAGGGGGCCGAGCGCCTGTTTGCGAGAACGGAGGAAT
TGCAGGCCCTTATCACGGAACTCTCGGGGAGGCAAGAACAGCTGCGACTA
GAGAATGAGACGCTTCGTGCAGCCAAAGTGAAAGCTTTAGATGCAGCCAA
CGCAGCTTCTTCCCAAGAAGCCGAAGCCCGCACTCAATTTGAGTCGCTGG
CAAGGACACATGCACGCTCCGAAGACGAGCTGCGCACCCGAGTATACCAG
CTGGACAGCGAGAGCCGTGCTATGAGGGCCAATGCTGTGCGATACGAAGC
CGAAAAGAATGCTTTAATACGCGACAAGGAGAGGCTCGAACGTGATTTGT
TGCGGTGTCAGAAGAAACTAAAAGATAGCCAACAAGCTGTCAAGCAGGCG
CGGGATTATCAGGAGATATCCCAGGCTGAACTCTGGGACTTGAAGGAGAG
CTTGGAACGTATGGAGGCCGGGACGAATGAGTTGCGGCAACATTTTCAAT
ACTCGCAAAATTATGATGGCGGCGATCCGATTCCATCGTAG back to top
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