rna3945, rna3945 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3945
Unique Name	rna3945
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3043
Alignment location	CM002462.1:477373..478854 -

Link to JBrowse

Properties


Property Name	Value
Product	folylpolyglutamate synthase
Orig transcript id	gnl\|cribi\|Naga_100001g179.8224.mrna
Orig protein id	gnl\|cribi\|Naga_100001g179.8224
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:477373..478854 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g179	gene3796	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26713.1	cds3935	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3945	rna3945-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:477373..478854-
coding sequence from alignment at CM002462.1:477373..478854-

mRNA sequence

>rna3945 ID=rna3945|Name=rna3945|organism=Nannochloropsis gaditana|type=mRNA|length=3043bp
TCTGTAATCAGATCCTCTTGCAATCTTTCGTGTAGTGGCTACCTCCACGT
ACGAGGCTTGTCTCTATGCGCATATATACGCCCTGACTTTTTCTTCCGAT
GACATACTACATCACCTTCTAGACGTGATCATGCAATTGCTTTCCGTCGC
GGCTTTGCTCGTGGGAGCGTGTCCGGTTGCTGCCTTTGTTCCCAGCGCAC
TGGCACCCTTCCGGGCCACCACCTCTTCACGATATAATGGGCCTTCCAAC
GCCAGACGGACGATGCTTTCGATGAGCACGACGGCCGAAGCAAAGCCGGC
AGCGGCCAAGTCTGCATCGGAGGGGCGCATTACTCCCCTTTCTGACTATC
GCAACATCGGTATCATGGCACACATCGACGCCGGCAAAACTACTACGACA
GAGCGAATTCTTTACTACACAGGGAAATCATACAAGATTGGTGAGGTCCA
TGAGGGTGCAGCTACCATGGATTGGATGGAGCAAGAGCAAGAGCGTGGCA
TCACTATCACATCGGCCGCTACCACTTGCTTCTGGAAGGACTACCGCATC
AATATCATCGACACGCCTGGTCACGTGGATTTTACTTTGGAGGTAGAGCG
TTCTCTCCGCGTGTTGGACGGTGCTGTTGCCGTCTTTGATGGAGTGGCCG
GTGTGGAGCCCCAATCCGAGACGGTTTGGCGCCAGGCCAATAAGTACAAG
GTGCCGCGCATGTGCTTCGTCAACAAGATGGATCGGATGGGGGCGAACTT
CTACCGGTGCGTTGAGATGATCAAAAAGAATCTGGGCGCGAATCCAATTG
TGCTTCAGCTGCCCATCGGTGCCGAGTCCGACTTCCTGGGTGTGGTGGAC
TTGGTCCGCATGGAGGCTATCACCTGGCGGGACGAGGGGCTAGGGGCCCA
GTTCGACGTGGAGCCCGTGGCCGAGTGCGCCAAGGTCTCGGACGAGCTCA
AGGCGCTATCCAAAGAGTGGCACGAGAAGATGGTGGAGCAGGCGGTGGAG
GAGGACGAAGAGGTGTTGATGGAGTACCTGGACGGGAAGGAGCCATCTGT
TGAGGTCCTGAAGAAGTGCATCCGGCAGGGTACGCTCAAGCAGCATTTCG
TGCCCGTCCTCACGGGGTCGGCCTTCAAAAACAAGGGTGTTCAGCCGCTG
CTTGACGCGGTTGTCGACTACATGCCCTCCCCTACAGAAGTGGAGGATAT
TCAGGGCGTCCTCCTCACGGGTGAACCCACCTCGCGCGCCTCCGACGACG
ACGTGCCTTTCTCCGCGCTGGCCTTTAAGATCATGAATGATCCATTTGTG
GGCCCCCTGACTTTCGCACGAATATACTCCGGCGTCCTTGAGGCCGGCTC
TTCTGTCCTCAACTCCCCCAAGAACAAGCAGGAACGCGTGGGTCGAATGC
TGGAGATGCACGCGAATTCCCGCACCGAGCTGAAGAGTGCGCGCGCGGGC
GACATTGTGGCCATCGTCGGGCTCAAGGACACTATCACGGGAGAGACGCT
GTGCGACAAGGAGAAACCCGTCATTCTGGAGAAGATGGACTTCCCGGATC
CCGTCATAAAGATCGCGGTGGAGCCCAAGACCAAGGCGGACACGGAGAAG
ATGGGCATGGCCTTGAACCGGTTAGCGGCGGAGGACCCTTCCTTCCGCTA
CTCCCGCGACGACGAGACGGGCCAATCGATCATCGAGGGCATGGGGGAGC
TGCACTTAGAGATTATCGTGGATCGTATGAAGCGCGAGTTCAAGGTCGAG
TGCAATGTGGGCGCCCCGCAAGTCGCTTATCGCGAGGCGATCACCCGGGC
TGCGGACGTGGACTACACACACAAGAAGCAAACCGGTGGGTCAGGACAGT
TTGCACGTGTGAAGATTCGCTTTGAACCTATGACTGAGGAGGAGGCGACA
GGAGAAGAGGACCAGGACGGGAAGAAGAAGGAGCGCAAGGCGTTCGAGTT
CGAAACTCAGATCAAGGGTGGCGCCATCCCCAAGGAGTACATCCCGGGGG
TGATGAAAGGGGTGGAGTCGGTGATGGGCAACGGCGTGCTTGCAGGCTTC
CCGGTGCAAGGACTGAAGGCTACGCTCGTCGACGGCGCCTTCCATGACGT
GGACTCCTCCGTGCTGGCCTTCGAAATCGCGGGGCGAGCAGCGGCTCGGG
AGGGCCTGCGCAAGGCGGGGTCGAAGCTGATGGAGCCTATGATGAAGGTG
GAGGTGGTGACGCCCGAGGAGTACATGGGCGACGTAATTGGAGACATAAA
CTCTCGACGCGGGCAGATCGCCGAACTTGGGGAGCGTGGCAATGCCAAGA
CGGTGGAGGCCATGGTGCCCCTGGCGAACATGTTCCAGTACGTTTCCGCC
CTTCGTTCAATGAGCAAGGGCCGAGCCTCCTACTCGATGGAGCTTGCGGC
CTACGACCTGGTCCCGCCGAATGTGCAAGAGGAGGTCGTAAAGAAGTTTG
GCAAGAAGACGCCAGAGGACGAGGAGGAGTAAGCGACACGTCGGCTGCCA
GCGATGGGAAGGCCAGAAGGTGGACATTGAATATGTGTGGATAGTGTCTA
CGGAGATCTGCAAAGTGTCCTGCTAAGAGGGACACACGCAATGGTGGGAA
TAAGAGGGGTGGTGAGGAGGCAGGCGATAGGGATCACACTCTTGAGGTCG
CCAGGAGAGGAAGGAGACTCAATTCTCCTACCGTGCCTTGCGAGCTTGGA
GAAAAAATTGTTGGGCTTATAACTAGGAGGCGGAGGAATCAATGCGCGAA
GAGGGAAAAAGATGGGAGCAAGAAAGCGATACCCTAGGCAATCATAGACG
CGTATGGTACGCATGTTCGTTCTTTACATTTGTATACCTGACTTTCGATA
CAGTATTATCATTGCTACATGCATTAGCCAGCATTGCCATTTTGACACGA
TGATTGATTTAAAAAGACTTCTTGCGCAGCTGAGAACTGAGCACCCGCCA
CTTCCGAAATCACTGCCGAGTCTTGCGGCTCTTTGATACCTAGGGCCCTC
CGCACCTCCCCCATGATAAAGAAGGATCCGCACACTACAACTG

protein sequence of rna3945

>rna3945-protein ID=rna3945-protein|Name=rna3945|organism=Nannochloropsis gaditana|type=polypeptide|length=493bp
MATSATKMSRYELLVRKLYQVNMYCAAKLGLDNIQALHQAIGRPLQRVPN
IVHVGGTNGKGSVAFKLAKCLEYSNIRTGLFVSPHIASFRERMQVNGELI
SEAEVETLLSEIMEVRGAQAIPATFFEITTALAFSFFARRELGAAVVEVG
LGGRLDATNIIEKPRLAVLTSIGLEHTKILGSSIEAIAREKAGIIKPGVP
IILGPHVPHDFLGAIAAERQSPVLLVPKGPYPNFEEENTAIARTALEYLR
TSQPALPWREGPEGDLALARGLRSRPPCRFQEMERRVGNRSVRVVLDVGH
NPPALRRLFERLLSPTKSELQARGAQAPPAWKEPVVRLVLGLSADKDIRE
CLQTVLAFVPPPRLHIIQARHPRAATPMALVEAAAALGASLPSGNYGYAS
VQEGIDTALQAAAVSFTKRAESDNLEMDENTKNEAQETVVVCGSFFIMGE
VRRALGIKEPQDSAVISEVAGAQFSAAQEVFLNQSSCQNGNAG

mRNA from alignment at CM002462.1:477373..478854-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3945 ID=rna3945|Name=rna3945|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp|location=Sequence derived from alignment at CM002462.1:477373..478854- (Nannochloropsis gaditana)
ATGGCAACGAGTGCGACAAAGATGTCAAGATACGAGTTGCTGGTTCGAAA
ATTGTATCAGGTGAACATGTATTGCGCAGCTAAGCTCGGTCTCGATAACA
TTCAAGCGCTACACCAGGCGATCGGGAGGCCCCTTCAGAGGGTCCCGAAC
ATCGTGCATGTTGGCGGGACTAATGGCAAAGGCTCGGTCGCCTTCAAACT
GGCAAAATGCTTGGAGTACTCCAACATTCGCACCGGCCTTTTCGTCTCCC
CGCACATAGCAAGTTTTCGGGAGCGTATGCAGGTGAATGGCGAGCTCATA
AGCGAGGCCGAAGTCGAGACCCTTTTAAGTGAGATTATGGAAGTCCGCGG
GGCTCAAGCTATTCCCGCCACTTTCTTTGAGATAACTACTGCACTAGCTT
TCAGCTTTTTTGCTCGGCGTGAATTGGGAGCTGCAGTCGTGGAAGTCGGG
CTGGGTGGACGCCTGGACGCCACTAACATTATCGAGAAGCCGCGCCTCGC
TGTTCTCACCTCTATCGGTCTTGAGCACACAAAAATTCTTGGCTCTAGCA
TTGAAGCTATAGCCCGCGAAAAAGCCGGTATAATCAAGCCAGGCGTGCCC
ATCATCCTCGGACCTCATGTCCCGCACGACTTCTTGGGGGCCATCGCGGC
CGAGCGCCAGTCTCCAGTCCTGCTGGTGCCGAAGGGACCCTACCCTAATT
TCGAGGAAGAAAATACGGCCATCGCTCGAACAGCTCTCGAATATCTGCGC
ACATCCCAGCCTGCCCTTCCCTGGCGGGAGGGCCCGGAGGGGGACCTCGC
ACTCGCTCGCGGCCTGCGGAGCCGACCGCCCTGTCGCTTCCAGGAGATGG
AGCGGCGGGTGGGGAACCGCAGCGTGCGCGTGGTGTTGGACGTGGGCCAC
AATCCCCCAGCACTCCGTCGCCTTTTTGAGCGTCTTCTCTCGCCGACAAA
GAGCGAGCTTCAGGCACGAGGAGCACAGGCGCCCCCCGCGTGGAAGGAAC
CCGTCGTCAGACTGGTCCTGGGCCTTTCCGCCGACAAGGACATCCGCGAG
TGCCTGCAGACCGTCCTCGCATTCGTGCCTCCTCCACGTCTGCACATCAT
CCAAGCGCGTCACCCCCGTGCGGCAACGCCAATGGCCTTGGTAGAAGCAG
CTGCCGCCTTAGGCGCCTCGCTCCCGTCGGGGAACTACGGCTACGCCTCT
GTCCAGGAGGGTATTGACACTGCCTTGCAGGCCGCCGCAGTGTCTTTCAC
TAAACGTGCAGAATCTGACAACCTGGAAATGGATGAAAATACGAAGAACG
AGGCCCAGGAGACAGTTGTAGTGTGCGGATCCTTCTTTATCATGGGGGAG
GTGCGGAGGGCCCTAGGTATCAAAGAGCCGCAAGACTCGGCAGTGATTTC
GGAAGTGGCGGGTGCTCAGTTCTCAGCTGCGCAAGAAGTCTTTTTAAATC
AATCATCGTGTCAAAATGGCAATGCTGGCTAA

Coding sequence (CDS) from alignment at CM002462.1:477373..478854-

>rna3945 ID=rna3945|Name=rna3945|organism=Nannochloropsis gaditana|type=CDS|length=1482bp|location=Sequence derived from alignment at CM002462.1:477373..478854- (Nannochloropsis gaditana)
ATGGCAACGAGTGCGACAAAGATGTCAAGATACGAGTTGCTGGTTCGAAA
ATTGTATCAGGTGAACATGTATTGCGCAGCTAAGCTCGGTCTCGATAACA
TTCAAGCGCTACACCAGGCGATCGGGAGGCCCCTTCAGAGGGTCCCGAAC
ATCGTGCATGTTGGCGGGACTAATGGCAAAGGCTCGGTCGCCTTCAAACT
GGCAAAATGCTTGGAGTACTCCAACATTCGCACCGGCCTTTTCGTCTCCC
CGCACATAGCAAGTTTTCGGGAGCGTATGCAGGTGAATGGCGAGCTCATA
AGCGAGGCCGAAGTCGAGACCCTTTTAAGTGAGATTATGGAAGTCCGCGG
GGCTCAAGCTATTCCCGCCACTTTCTTTGAGATAACTACTGCACTAGCTT
TCAGCTTTTTTGCTCGGCGTGAATTGGGAGCTGCAGTCGTGGAAGTCGGG
CTGGGTGGACGCCTGGACGCCACTAACATTATCGAGAAGCCGCGCCTCGC
TGTTCTCACCTCTATCGGTCTTGAGCACACAAAAATTCTTGGCTCTAGCA
TTGAAGCTATAGCCCGCGAAAAAGCCGGTATAATCAAGCCAGGCGTGCCC
ATCATCCTCGGACCTCATGTCCCGCACGACTTCTTGGGGGCCATCGCGGC
CGAGCGCCAGTCTCCAGTCCTGCTGGTGCCGAAGGGACCCTACCCTAATT
TCGAGGAAGAAAATACGGCCATCGCTCGAACAGCTCTCGAATATCTGCGC
ACATCCCAGCCTGCCCTTCCCTGGCGGGAGGGCCCGGAGGGGGACCTCGC
ACTCGCTCGCGGCCTGCGGAGCCGACCGCCCTGTCGCTTCCAGGAGATGG
AGCGGCGGGTGGGGAACCGCAGCGTGCGCGTGGTGTTGGACGTGGGCCAC
AATCCCCCAGCACTCCGTCGCCTTTTTGAGCGTCTTCTCTCGCCGACAAA
GAGCGAGCTTCAGGCACGAGGAGCACAGGCGCCCCCCGCGTGGAAGGAAC
CCGTCGTCAGACTGGTCCTGGGCCTTTCCGCCGACAAGGACATCCGCGAG
TGCCTGCAGACCGTCCTCGCATTCGTGCCTCCTCCACGTCTGCACATCAT
CCAAGCGCGTCACCCCCGTGCGGCAACGCCAATGGCCTTGGTAGAAGCAG
CTGCCGCCTTAGGCGCCTCGCTCCCGTCGGGGAACTACGGCTACGCCTCT
GTCCAGGAGGGTATTGACACTGCCTTGCAGGCCGCCGCAGTGTCTTTCAC
TAAACGTGCAGAATCTGACAACCTGGAAATGGATGAAAATACGAAGAACG
AGGCCCAGGAGACAGTTGTAGTGTGCGGATCCTTCTTTATCATGGGGGAG
GTGCGGAGGGCCCTAGGTATCAAAGAGCCGCAAGACTCGGCAGTGATTTC
GGAAGTGGCGGGTGCTCAGTTCTCAGCTGCGCAAGAAGTCTTTTTAAATC
AATCATCGTGTCAAAATGGCAATGCTGGCTAA

Synonyms

Publications