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Properties
| Property Name | Value |
|---|
| Product | dihydrolipoamide dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100001g181.8214.mrna |
| Orig protein id | gnl|cribi|Naga_100001g181.8214 |
| Gene | GCSL |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:469365..473825 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of rna3943 >rna3943-protein ID=rna3943-protein|Name=rna3943|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MRLSSTCLFLAITGATAFFCPKPMPHLMSATRGFVPAHVATAQRVRQVSG
DVSHRQGALFMGEQFDYDVIIVGCGVGGHGAALHARSEGLKTAVFSGRDV
GGTCVNRGCVPSKALLAASGRVREMKDAHHLKALGISVEGDITYDRASVA
AHAANLANKVKGNLENSLKALGVEVIEAKGVLAGPHKVMGDGKVFTAKDI
ILAPGSLPFVPPGVTCDEKTVFTSDGGLRLERVPEYVAIIGSGYIGLEFS
DVYTALGSEVTFIEAMDRIMPTFDPEIARVAERLLIKPRAIDYRTGVFAS
KVTPGIPGEKPVTIEMIDAKTKELVEVLEVDACMVATGRVPNTKELGLEE
MGVETFRGFVQVDENMRVLTKPETEGGEVVPNLYCIGDANGKLMLAHAAS
AQGVSAIENIKGRKHAVDHNTVPAACFTHPEVAFVGLSEEQAKAKGEKEG
FKVGKSIGHFRANSKALAEGEPDGIAKVVVNKDTGDLLGVHIIGLHAADL
IQECANAMAAKTPVSELAMMVHTHPTLCEVLDEAFKGAVGRTAH back to topmRNA from alignment at CM002462.1:469365..473825+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3943 ID=rna3943|Name=rna3943|organism=Nannochloropsis gaditana|type=mRNA|length=4461bp|location=Sequence derived from alignment at CM002462.1:469365..473825+ (Nannochloropsis gaditana)
GTTGAACTTGGGCAGAAGTTGGCCAACGGAAGACGCATGCACAGGTTATA
CTCATCAAAGCATTTCACACTCGTTTAAAATCTAAGTCCACTTTTATAAA
CATCCGCTTCTTCAAAGCACAAACGGCAAACTCCATGCCATTGACAGACT
TCCACAGAAGCTCTAAGAAACCGCATCCGGTGCCTCCCCTTAGCTCCcta
gcctcctcccctactgCTTGCCGTCCATGTAGttttccgcctccgtcaGC
ACCGCCAGCATCGACAGATATTCCATATTTAAAGTCTTTCTATAGACACT
CCCACTCGCCACCACAACGCGTGTCTCACGTCCGCAGCAATACACAGACT
TTGGGAAAGGTCCTTTCTACCAGTGGGGCACGCATGCAGGCAACCTCGTC
GGATCGAGAGAAGATACGGTCAACCACCCGAGTAATAAATTTAGCAAGCC
AATATCTTAGAAGAAAAACGGGCACTTCATTTTCTTCTGATTTGTCATCG
ACCCTTCCGGGGCAGGAAGCATCCAAAGGCAAGCCCTCAACTTCCAATGG
CGCCAGGTTCGGCACTATTCGCCCAGTACCCCGTCAATACCTGAATTACC
ACGTCAGACAGCGTGAAAATGGCGCCTGGCAAGCAACAGTGTCTTTGGTG
CAACCTTTTGTGAGAGGTCTCTGGACAGACCCGCAAGGTACCCGGCCGGG
CTATATCACTATGGGGTTCTACAGTACAGAGCAAGGAGCACTGGCTGCAT
GTTGCAATCATGCCCCCCCCGTATGGGCGGAGCCCCTTAAGGAATCCATC
TGTTACATGTGTCTAGAGTATCGGAAAAAAATGTACAGGTCGCCATTGCA
TTGCAGAAACTGCGGGCAGCTCGTTTGTCCAAAATGTTCGAAGTCCCGGT
GGCCCCGCGGcatgcttccctccacctaCCATAACAATGAAAGTACAGTC
CGCGTATGTGATGCATGTAATCACCTTGCGTGGAATTTCCGTCGTGCCtt
gaaagaaggagaccGCATTCGAGCATTGGAACTTTTTGCGAGTGGAAATT
TGAATATCTGGATGCCTTTCATCATCGAGTCGGTGCGGGAGTATCCAGTT
CACTGTGCAGCTGAGGGCGGCAATCTTGATCTTCTTCGATGGCTTGTTAA
TGAACTTGGCTGTCCATTGTATGAGACGGCAGATGGCGCATCGCCGCTTC
TGACGCATCGAGGGGACAGTGTTTTAGGCGTGGCTTCGCGACATCGTCGA
GTTACCATAATGCGATGGTtggtgaaggagaaaggTTGTAAGATATCGGA
AATTATAGAGAGGCGACAGCTGTGGGACATTATTGACTTTTTATTAGAAG
GGAACGCCCACAACGAAGATGAAAAGGATTACCGTGTAGTTTTGGGTGGC
GATCTTCCAATATCTCGACGCCCTCTGGGGGCATCGAAGGCGCCAACATC
CTGCCAGCATCCATACTGAAGAATCAAtcccagggagggggagtagGGAT
TGTGCTCAAAAAAATGTTGACAATGTGTTGGGCCGAAAGGAGGCGACTAC
GGACAGATAcagcgcctccaggtcgAATGAGGGATGTTATAGAGGTCAAC
CAGGGAATTTGTGGCTGCTAGTGAGGCATCTTGTCATGGCACTTTCGGTT
GCTATTAAACCCTCAGCCTCAAAGCTGAGCCTCGAAGAAATGGAATTATA
AAGTACTGCGGGAGAGGCTGttgtgagagaggaagggtagATAACATGGA
CGGTAGGATTTAATCTTAGTCAATAGAGTCATAACACAGAGCAAAGCGAC
AATAAGGGAGAACCTTGAAATGTACATGAAGGCGTGTCAAGCAAGCACAT
GCGAAGTTGTCTTGTGGCTCGCAAGGCCGGTGAGACCAGACCGTCTTAAA
AGAAGCAGAGACGGGGTCGGACCACGGGATTGGACGTCATGCTTTCCCTT
GGGGTCCTGTCTCATCCAAGTAATCCTCAGCTTAAGATTCGACGACCTCG
GAACCAAGAAAAATCTTCGACCCCCACATGGTACACCGACAAGTTTGAAG
cggtccttttcctttggcCCATATTCCGGTCCCCGGATCCTGCGGCTCGC
CATCGCCCATGAtccttcctcgtcaccccctcgcctcgcctCATCATACG
TACGGCGGCTCGGCCCGCATCCTGCAGCTGGGCAGCTTTGTCACCTTACA
CGCCAGGACATACCTGCCTCCCGCATgcagccctccttctccgaaagaga
agacgaggcggaaTGGCCTGATCAACAACGTCGGTGGCCTGCTCTGTACG
GCCGGCTCACGCCAGTATGCACCGGCATGGAAGAAGCATGCGTCGAGTTC
CTGTGCTCCTCGCCCACACCGAGCTGTCCCTCGTGGTTTTGAGGACGGGT
GATCTATGGCCTCCCTGTCGtaatttttcttcctgtctcATTCTCTTCCA
GTCACACCACAGCAACGATGCGGTTGTCGTCGACCTGTCTTTTTCTGGCC
ATCACGGGGGCTACGGCTTTCTTTTGCCCCAAACCCATGCCCCACCTGAT
GTCAGCGACTAGAGGCTTCGTCCCTGCGCATGTCGCGACGGCACAACGCG
TACGACAAGTATCCGGGGATGTCAGTCACCGACAAGGCGCGCTCTTCATG
GGAGAGCAGTTTGATTATGACGTCATTATTGTTGGGTGCGGGGTAGGAGG
ACACGGAGCGGCCCTGCATGCGCGTTCAGAGGGTCTCAAAACAGCGGTTT
TCTCGGGcagggacgtgggggggacATGTGTTAATCGAGGGTGTGTGCCG
TCCAAAGCACTTTTGGCAGCGTCGGGACGAGTGCGAGAAATGAAAGATGC
GCACCATTTGAAGGCCTTGGGTATCTCTGTAGAGGGCGATATTACATACG
ACCGCGCCTCGGTGGCAGCGCACGCGGCAAATTTGGCGAATAAAGTCAAG
GGTAACCTTGAAAATTCCCTCAAGGCGCTAGGAGTGGAGGTAATCGAAGC
TAAGGGTGTGTTGGCGGGTCCGCATAAAGTGATGGGAGATGGAAAAGTCT
TTACGGCAAAGGATATCATCCTGGCGCCAGGCTCGCTGCCTTTCGTGCCG
CCGGGCGTCACGTGCGACGAGAAGACAGTCTTCACGTCCGATGGGGGCTT
ACGACTGGAGCGCGTGCCCGAATACGTGGCCATTATTGGGTCGGGATACA
TCGGCCTGGAATTTTCGGACGTGTACACGGCCCTAGGCTCGGAGGTGACC
TTCATCGAAGCCATGGACCGCATTATGCCTACCTTTGATCCTGAGATTGC
GCGCGTAGCGGAGCGCCTCCTGATCAAGCCCCGCGCCATCGACTACCGCA
CTGGTGTTTTTGCAAGCAAGGTGACCCCGGGAATACCGGGAGAAAAACCA
GTAACGATCGAGATGATCGATGCCAAGACCAAAGAGCTGGtcgaggtgct
ggaggtggacgcgTGTATGGTGGCCACGGGGCGAGTGCCTAACACGAAGG
AGCTTGGGCTCGAAGAAATGGGCGTGGAGACCTTTCGCGGGTTCGTTCAG
GTGGACGAAAACATGCGAGTGCTGACCAAGCcggagacggagggcggcga
aGTGGTGCCCAATCTATACTGTATCGGGGATGCGAATGGGAAGTTGATGT
TGGCGCATGCCGCGTCTGCGCAAGGAGTGTCAGCGATTGAGAATATCAAA
GGCCGCAAGCACGCTGTCGATCACAACACAGTCCCCGCTGCCTGCTTCAC
GCACCCCGAGGTGGCCTTTGTTGGGCTAAGCGAAGAACAGGCCAAGGCga
aaggcgagaaggagggattcAAGGTCGGCAAGTCCATCGGACATTTCCGT
GCAAActccaaggccctggccgaaGGGGAACCGGACGGGATCGCTAAGGT
CGTGGTCAACAAGGATACGGGAGACCTTCTAGGCGTGCATATTATTGGCC
TGCATGCAGCGGACCTGATTCAGGAATGTGCGAACGCAATGGCTGCCAAG
ACACCAGTCAGTGAGCTCGCCATGATGGTGCACACACACCCAACGCTATG
TGAGGTCTTAGACGAGGCCTTCAAGGGCGCTGTCGGCCGCACCGCTCATT
AAGAATCATGCCTGGTTTTGTGCGTGAGCTATCGCGTCTGTCTTAGTGTC
GTCAGCGTCCTTCTATAGCTCTCTCTCTGTAGCAGGGTAGCGCAGGTTTC
TATACATACGTGGGTGTGCTTTTTTGACCTGTCGTTTTTCAGGGTGGAAt
gcgagagaggaaagaggcaaagATTTATCTGTTATGACTGGATATATGTA
TGACAATCTTAGTGTTGATCCTGTGTGTTGTATTGCGCGTCGCGTGTGGG
ATGGGAAGTCGGGGGAGTTGCGTCAACGCGTATCGTGATTGCCGTCTTTC
TGACATGTGCCAAGGCCTCGCTTCTTATTTCTGAAGAATAATCCACTTTT
AACATTTTTAC back to topCoding sequence (CDS) from alignment at CM002462.1:469365..473825+ >rna3943 ID=rna3943|Name=rna3943|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002462.1:469365..473825+ (Nannochloropsis gaditana)
ATGCGGTTGTCGTCGACCTGTCTTTTTCTGGCCATCACGGGGGCTACGGC
TTTCTTTTGCCCCAAACCCATGCCCCACCTGATGTCAGCGACTAGAGGCT
TCGTCCCTGCGCATGTCGCGACGGCACAACGCGTACGACAAGTATCCGGG
GATGTCAGTCACCGACAAGGCGCGCTCTTCATGGGAGAGCAGTTTGATTA
TGACGTCATTATTGTTGGGTGCGGGGTAGGAGGACACGGAGCGGCCCTGC
ATGCGCGTTCAGAGGGTCTCAAAACAGCGGTTTTCTCGGGcagggacgtg
ggggggacATGTGTTAATCGAGGGTGTGTGCCGTCCAAAGCACTTTTGGC
AGCGTCGGGACGAGTGCGAGAAATGAAAGATGCGCACCATTTGAAGGCCT
TGGGTATCTCTGTAGAGGGCGATATTACATACGACCGCGCCTCGGTGGCA
GCGCACGCGGCAAATTTGGCGAATAAAGTCAAGGGTAACCTTGAAAATTC
CCTCAAGGCGCTAGGAGTGGAGGTAATCGAAGCTAAGGGTGTGTTGGCGG
GTCCGCATAAAGTGATGGGAGATGGAAAAGTCTTTACGGCAAAGGATATC
ATCCTGGCGCCAGGCTCGCTGCCTTTCGTGCCGCCGGGCGTCACGTGCGA
CGAGAAGACAGTCTTCACGTCCGATGGGGGCTTACGACTGGAGCGCGTGC
CCGAATACGTGGCCATTATTGGGTCGGGATACATCGGCCTGGAATTTTCG
GACGTGTACACGGCCCTAGGCTCGGAGGTGACCTTCATCGAAGCCATGGA
CCGCATTATGCCTACCTTTGATCCTGAGATTGCGCGCGTAGCGGAGCGCC
TCCTGATCAAGCCCCGCGCCATCGACTACCGCACTGGTGTTTTTGCAAGC
AAGGTGACCCCGGGAATACCGGGAGAAAAACCAGTAACGATCGAGATGAT
CGATGCCAAGACCAAAGAGCTGGtcgaggtgctggaggtggacgcgTGTA
TGGTGGCCACGGGGCGAGTGCCTAACACGAAGGAGCTTGGGCTCGAAGAA
ATGGGCGTGGAGACCTTTCGCGGGTTCGTTCAGGTGGACGAAAACATGCG
AGTGCTGACCAAGCcggagacggagggcggcgaaGTGGTGCCCAATCTAT
ACTGTATCGGGGATGCGAATGGGAAGTTGATGTTGGCGCATGCCGCGTCT
GCGCAAGGAGTGTCAGCGATTGAGAATATCAAAGGCCGCAAGCACGCTGT
CGATCACAACACAGTCCCCGCTGCCTGCTTCACGCACCCCGAGGTGGCCT
TTGTTGGGCTAAGCGAAGAACAGGCCAAGGCgaaaggcgagaaggaggga
ttcAAGGTCGGCAAGTCCATCGGACATTTCCGTGCAAActccaaggccct
ggccgaaGGGGAACCGGACGGGATCGCTAAGGTCGTGGTCAACAAGGATA
CGGGAGACCTTCTAGGCGTGCATATTATTGGCCTGCATGCAGCGGACCTG
ATTCAGGAATGTGCGAACGCAATGGCTGCCAAGACACCAGTCAGTGAGCT
CGCCATGATGGTGCACACACACCCAACGCTATGTGAGGTCTTAGACGAGG
CCTTCAAGGGCGCTGTCGGCCGCACCGCTCATTAA back to top
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