rna3932, rna3932 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3932
Unique Name	rna3932
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1299
Alignment location	CM002462.1:446353..447430 +

Link to JBrowse

Properties


Property Name	Value
Product	n-terminal acetyltransferase complex ard1 subunit
Orig transcript id	gnl\|cribi\|Naga_100001g191.8171.mrna
Orig protein id	gnl\|cribi\|Naga_100001g191.8171
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:446353..447430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g191	gene3783	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3932	rna3932-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26660.1	cds3923	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:446353..447430+
coding sequence from alignment at CM002462.1:446353..447430+

mRNA sequence

>rna3932 ID=rna3932|Name=rna3932|organism=Nannochloropsis gaditana|type=mRNA|length=1299bp
CTTACAGAACCATTTCGCTGCCGAATCATGGCGCCTATCGGGAATAAGCC
TACTCACAAGGGCAAGGCGGTCTTGGCAGGCGGGCTCTCGGGGGCCTTTG
AAATTTGCTGTACGTTCCCAACAGAGTATGTCAAGACGACGCAGCAGCTG
AGCCCCAGACCTGTGTCTGTAAAACAAGTAATATCAGAGACGATGGCAGA
GCGGGGCTTTTTCGGCTTCTACCGCGGGCTTTCCTCCATGCTGTACTTCG
CGGCACCCAAGGCAGCAATCCGGTTCAGCTCCTTCGAGTTCTTCTCGGGC
CTGCTCACTGACGCCAACGGAGGGGACAAGTACGGTCTGGGCCAAGCCAA
AGGATTCCTGGCGGGGCTTGGCGCGGGAACCATGGAGGCAATCTTCGTGA
CCACACCGCAGGAGACCATTAAGATCAAGTTGATACACGACCAGTTTCGC
GGCACTAATAAGTACCAGGGATTCTTCCACGGTGTGAGGACCATCGTGGC
GGAGGAGAAGCTCTCCGGGGTATACCGCGGCCTCCTCCCCACCATCTTGA
AGGTCTCCACCGCGCAGGCCACGCGCTTCGGCATCTTCAGCGTCATCAAG
GACTATGTCAAGCTGGACACCCCCATCAAAAGCGCGGCGGCTGGCGCCAC
GGCGGGGGGCATCTCCGTGCTCGCTTTCCAGGGCATTGACGTGGTGAAGA
GCCGGATGCAAGGCCTGGAGGCGGCCAAGTACAAGAGCACCTGGGACTGC
GTGGGACAGATCCTGAAGAACGAGGGCGTGGCCGGCTTTTATAAGGGGGT
GGGGCCGCGGTTGACGCGCGTGTGCCTGGAGGTAGGCATCACGATGAGCA
TGTACGGGGAGATAGTGAAGCTCCTGGATGCGGTCTGGGACACCAACCCG
CCCAAGGTGCCCATGGCCCAGTAGGGAGAAGGAAGAATGGATAAAGAAAG
GGAGAGAGGGAGGGGAGGTGTTTGGGAAGCCCTTCATCCTGGAACGATAT
TTGGCGGATATGCTCGTTGGGCATACCTCGCTTTCGATCACATAATTCGG
CCTTCAAGCGCTCGGCGAGATTCTGGCCAATAGACCTAGGGCCGCCGCTT
GTTGGATGGGTGCAGAGGAGGGAAGGCGATGCTCAACCCCAGACATGATG
GTTGGCGGCTAGGGGGGCATTCTTGGAGGGGTGTGCATTCGCGACGGAAG
CAGGGCGATTGAGTTGCGGGTGGGATGTAGGGCGTTGGATAGACTGAGCT
CGGAAGCAGAGGACGCTAATGAATTTTGACGATTAAGGGTGCTATGAGA

protein sequence of rna3932

>rna3932-protein ID=rna3932-protein|Name=rna3932|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MVCIRQACAEDLLQIQATNLWCLPENYQMKYYFYHILSWPQLLFVAEDHR
QRIVGYVLAKMEEDAAVPHGHITSLAVLRTYRKCGIATRLMQASQRCMAE
TFEAQYVSLHVRKSNSAAIHLYTKTLGYEIHDEEKAYYADGEDAYDMRKY
LNKCDLMLPSIPAVTNSSHAPASSQVSAIVEPKVSISGRQGEHGQKIVSD
TEQLAENLGEMGVEDVERNRLD

mRNA from alignment at CM002462.1:446353..447430+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3932 ID=rna3932|Name=rna3932|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp|location=Sequence derived from alignment at CM002462.1:446353..447430+ (Nannochloropsis gaditana)
ATGGTTTGTATTCGGCAAGCGTGTGCGGAGGACTTATTACAAATTCAGGC
GACCAACCTGTGGTGCTTGCCAGAGAATTACCAGATGAAGTACTACTTTT
ATCACATCCTATCGTGGCCCCAACTCCTCTTCGTGGCCGAGGATCACCGT
CAACGCATTGTGGGTTACGTCCTTGCTAAAATGTGAGGCTTACACCCTTT
GAAATTTCTTGGATACCTTTAAGCGCATGAGTGGACGTGAAAATGTAAAT
GTTGCCACGCCCAGTAACGTTTAAGATGCAACACTCTGTTTACCACCCTC
ACCGAttcagggaagaggacgctGCGGTACCACACGGGCACATCACATCT
CTGGCAGTTCTACGGACGTACCGGAAATGCGGCATTGCCACCCGCCTCAT
GCAGGCGTCGCGTAAGTAGGGTGCCGGATGAAGGGGGGGTAAGAGTCAGC
CTCACACTGCTTCAGGATACTTATGACTCTCATGACAACCATGGAGCAGA
AAGGTGCATGGCGGAGACATTTGAAGCTCAATACGTGTCGTTGCACGTGC
GAAAGAGCAACAGCGCGGCCATTCACCTTTACACGAAGACATTGGGATAC
GAGTAAGTGAAACGAGCAGCGAGGCCTTAGGTACAGAGACCCATTGAACT
AGTGATGAAGCGTCCTGGGTTATTTGTCGCTCAAAACGTACTTCGAATAC
GGCAGGATccacgacgaggagaaggcttACTACGCAGACGGAGAGGACGC
ATGTACGTACGAAAGCTTGTCTCGCTTTTTCGTGCGGCGCTCTTTTCACC
AAGTCCTACTGTACATCACATTTTGCCCATATCGATCCATAGATGACATG
CGCAAGTACCTTAACAAGTGTGACTTGatgcttccctccatccccgcggT
AACGAACTCGTCTCATGCGCCGGCAAGTTCCCAAGTGTCTGCAATTGTCG
AGCCGAAAGTAAGCATCAGtggcaggcaaggagagcACGGTCAAAAAATA
GTTTCTGATACAGAACAGTTGGCGGAAAACCTGGGTGagatgggcgtgga
ggatgTCGAGAGGAACAGATTAGACTAG

Coding sequence (CDS) from alignment at CM002462.1:446353..447430+

>rna3932 ID=rna3932|Name=rna3932|organism=Nannochloropsis gaditana|type=CDS|length=3345bp|location=Sequence derived from alignment at CM002462.1:446353..447430+ (Nannochloropsis gaditana)
ATGGTTTGTATTCGGCAAGCGTGTGCGGAGGACTTATTACAAATTCAGGC
GACCAACCTGTGGTGCTTGCCAGAGAATTACCAGATGAAGTACTACTTTT
ATCACATCCTATCGTGGCCCCAACTCCTCTTCGTGGCCGAGGATCACCGT
CAACGCATTGTGGGTTACGTCCTTGCTAAAATggaagaggacgctGCGGT
ACCACACGGGCACATCACATCTCTGGCAGTTCTACGGACGTACCGGAAAT
GCGGCATTGCCACCCGCCTCATGCAGGCGTCGCAAAGGTGCATGGCGGAG
ACATTTGAAGCTCAATACGTGTCGTTGCACGTGCGAAAGAGCAACAGCGC
GGCCATTCACCTTTACACGAAGACATTGGGATACGAGATccacgacgagg
agaaggcttACTACGCAGACGGAGAGGACGCATATGACATGCGCAAGTAC
CTTAACAAGTGTGACTTGatgcttccctccatccccgcggTAACGAACTC
GTCTCATGCGCCGGCAAGTTCCCAAGTGTCTGCAATTGTCGAGCCGAAAG
TAAGCATCAGtggcaggcaaggagagcACGGTCAAAAAATAGTTTCTGAT
ACAGAACAGTTGGCGGAAAACCTGGGTGagatgggcgtggaggatgTCGA
GAGGAACAGATTAGACTAGATGGTTTGTATTCGGCAAGCGTGTGCGGAGG
ACTTATTACAAATTCAGGCGACCAACCTGTGGTGCTTGCCAGAGAATTAC
CAGATGAAGTACTACTTTTATCACATCCTATCGTGGCCCCAACTCCTCTT
CGTGGCCGAGGATCACCGTCAACGCATTGTGGGTTACGTCCTTGCTAAAA
TggaagaggacgctGCGGTACCACACGGGCACATCACATCTCTGGCAGTT
CTACGGACGTACCGGAAATGCGGCATTGCCACCCGCCTCATGCAGGCGTC
GCAAAGGTGCATGGCGGAGACATTTGAAGCTCAATACGTGTCGTTGCACG
TGCGAAAGAGCAACAGCGCGGCCATTCACCTTTACACGAAGACATTGGGA
TACGAGATccacgacgaggagaaggcttACTACGCAGACGGAGAGGACGC
ATATGACATGCGCAAGTACCTTAACAAGTGTGACTTGatgcttccctcca
tccccgcggTAACGAACTCGTCTCATGCGCCGGCAAGTTCCCAAGTGTCT
GCAATTGTCGAGCCGAAAGTAAGCATCAGtggcaggcaaggagagcACGG
TCAAAAAATAGTTTCTGATACAGAACAGTTGGCGGAAAACCTGGGTGaga
tgggcgtggaggatgTCGAGAGGAACAGATTAGACTAGATGGTTTGTATT
CGGCAAGCGTGTGCGGAGGACTTATTACAAATTCAGGCGACCAACCTGTG
GTGCTTGCCAGAGAATTACCAGATGAAGTACTACTTTTATCACATCCTAT
CGTGGCCCCAACTCCTCTTCGTGGCCGAGGATCACCGTCAACGCATTGTG
GGTTACGTCCTTGCTAAAATggaagaggacgctGCGGTACCACACGGGCA
CATCACATCTCTGGCAGTTCTACGGACGTACCGGAAATGCGGCATTGCCA
CCCGCCTCATGCAGGCGTCGCAAAGGTGCATGGCGGAGACATTTGAAGCT
CAATACGTGTCGTTGCACGTGCGAAAGAGCAACAGCGCGGCCATTCACCT
TTACACGAAGACATTGGGATACGAGATccacgacgaggagaaggcttACT
ACGCAGACGGAGAGGACGCATATGACATGCGCAAGTACCTTAACAAGTGT
GACTTGatgcttccctccatccccgcggTAACGAACTCGTCTCATGCGCC
GGCAAGTTCCCAAGTGTCTGCAATTGTCGAGCCGAAAGTAAGCATCAGtg
gcaggcaaggagagcACGGTCAAAAAATAGTTTCTGATACAGAACAGTTG
GCGGAAAACCTGGGTGagatgggcgtggaggatgTCGAGAGGAACAGATT
AGACTAGATGGTTTGTATTCGGCAAGCGTGTGCGGAGGACTTATTACAAA
TTCAGGCGACCAACCTGTGGTGCTTGCCAGAGAATTACCAGATGAAGTAC
TACTTTTATCACATCCTATCGTGGCCCCAACTCCTCTTCGTGGCCGAGGA
TCACCGTCAACGCATTGTGGGTTACGTCCTTGCTAAAATggaagaggacg
ctGCGGTACCACACGGGCACATCACATCTCTGGCAGTTCTACGGACGTAC
CGGAAATGCGGCATTGCCACCCGCCTCATGCAGGCGTCGCAAAGGTGCAT
GGCGGAGACATTTGAAGCTCAATACGTGTCGTTGCACGTGCGAAAGAGCA
ACAGCGCGGCCATTCACCTTTACACGAAGACATTGGGATACGAGATccac
gacgaggagaaggcttACTACGCAGACGGAGAGGACGCATATGACATGCG
CAAGTACCTTAACAAGTGTGACTTGatgcttccctccatccccgcggTAA
CGAACTCGTCTCATGCGCCGGCAAGTTCCCAAGTGTCTGCAATTGTCGAG
CCGAAAGTAAGCATCAGtggcaggcaaggagagcACGGTCAAAAAATAGT
TTCTGATACAGAACAGTTGGCGGAAAACCTGGGTGagatgggcgtggagg
atgTCGAGAGGAACAGATTAGACTAGATGGTTTGTATTCGGCAAGCGTGT
GCGGAGGACTTATTACAAATTCAGGCGACCAACCTGTGGTGCTTGCCAGA
GAATTACCAGATGAAGTACTACTTTTATCACATCCTATCGTGGCCCCAAC
TCCTCTTCGTGGCCGAGGATCACCGTCAACGCATTGTGGGTTACGTCCTT
GCTAAAATggaagaggacgctGCGGTACCACACGGGCACATCACATCTCT
GGCAGTTCTACGGACGTACCGGAAATGCGGCATTGCCACCCGCCTCATGC
AGGCGTCGCAAAGGTGCATGGCGGAGACATTTGAAGCTCAATACGTGTCG
TTGCACGTGCGAAAGAGCAACAGCGCGGCCATTCACCTTTACACGAAGAC
ATTGGGATACGAGATccacgacgaggagaaggcttACTACGCAGACGGAG
AGGACGCATATGACATGCGCAAGTACCTTAACAAGTGTGACTTGatgctt
ccctccatccccgcggTAACGAACTCGTCTCATGCGCCGGCAAGTTCCCA
AGTGTCTGCAATTGTCGAGCCGAAAGTAAGCATCAGtggcaggcaaggag
agcACGGTCAAAAAATAGTTTCTGATACAGAACAGTTGGCGGAAAACCTG
GGTGagatgggcgtggaggatgTCGAGAGGAACAGATTAGACTAG

Synonyms

Publications