rna3924, rna3924 (mRNA) Nannochloropsis gaditana

Overview
Namerna3924
Unique Namerna3924
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length237
Alignment locationCM002462.1:429012..430418 +

Link to JBrowse

Properties
Property NameValue
Productglycine decarboxylase t-protein
Orig transcript idgnl|cribi|Naga_100001g201.8177.mrna
Orig protein idgnl|cribi|Naga_100001g201.8177
GeneGDCT
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:429012..430418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GDCTgene3776Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3924rna3924-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26666.1cds3915Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3924 ID=rna3924|Name=rna3924|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGCCTGTTGAAGGCGTTCACCGAGTACCTAACGCTCTCCTCGAGCTTTC
CTTGATACACTTACGAGGTATGTTCGCCAACGTGTTGAATGGCGCGGCTC
GAGCGGCAGGTTTAAGCCGGCGGCAGCTACTTTTTGTCACCTCAGCTCGC
CGTTCCCTTGGAACTGAGGTGAGACAGCAATACTCAAATAATAATAATAA
TAATATCTACGTCAGAACCTCGGTTGTGGCTCAATAA
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protein sequence of rna3924

>rna3924-protein ID=rna3924-protein|Name=rna3924|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MAPRESDWFCGGAYMSAGGINLASPLDLMTPHQKLSSDDRALEKTALFDM
HLEMKGKMVPFAGYELPVLYEMPEWGGIVKEHLHCRAKASVFDVSHMGQI
KWHGKDRVKFLETLVVGDVAGLGVGEARLSLLTNKDGGIIDDTIITNAGD
YTYMIVNGATKGGDMAHFKEQMESFKGDVCFEYFHEQQLLALQGPSAAET
LQALLPADVDLSKVNFMTGFDTTVGGLQARVTRCGYTGEDGFEVSVAWKD
ARALAELFLEGPGIRLAGLGARDSLRLESGLCLYGNDIDATITPVEAALG
WTMGGPKGRRRKEQGFLGAEKFLSPEGKFLPISRKRVGLAGFKAPARAHT
EIFDPSGVNKIGEVTSGTFSPSLNKPIAMGYVAKEFSAEGSKVAVKVRGK
LQGADVTKMPFVTQHYYKAP
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mRNA from alignment at CM002462.1:429012..430418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3924 ID=rna3924|Name=rna3924|organism=Nannochloropsis gaditana|type=mRNA|length=1407bp|location=Sequence derived from alignment at CM002462.1:429012..430418+ (Nannochloropsis gaditana)
ATGGCTCCGCGGGAGTCTGATTGGTTTTGTGGCGGAGCCTACATGTCCGC
AGGAGGGATCAATTTAGCAAGTCCTTTGGATTTGATGACCCCGCATCAAA
AGCTATCAAGCGATGATCGAGTTTACGCTAGCAATTTTAGGACATaaatg
aaaagaaaaagacgggAGGAGCTCTCTGCGAGCTTCTCAGCGGCCATCTC
GCTTCTTTACCGAACATTCTCCCTTCGTTCCTCAACTAATTACACATACC
TGCTGTTCCTGTAGGCCTTAGAAAAAACGGCATTGTTCGATATGCACCTC
GaaatgaaaggaaaaatGGTGCCTTTTGCAGGCTATGAGCTACCAGTCCT
GTACGAGATGCCGGAATGGGGCGGGATCGTCAAGGAGCACTTGCACTGCc
gcgccaaggcctccgtcttCGACGTCTCCCACATGGGCCAGATCAAGTGG
CACGGAAAGGACCGCGTCAAATTTTTGGAGACTTTAGTAGTGGGGGATGT
GGCGGGTctgggcgtgggcgaggCACGGTTAAGCCTGCTCACAAACAAGG
ATGGCGGCATCATTGACGACACGATCATCACCAACGCGGGAGATTACACC
TATATGATCGTCAACGGCGCaacaaagggaggggacatgGCTCATTTCAA
AGAGCAGATGGAATCCTTCAAGGGGGATGTGTGCTTTGAGTACTTCCACG
AGCAGCAACTCTTggccctccaaggcccctcCGCGGCCGAGACCCTCCAA
GCTCTCTTGCCAGCCGATGTCGACCTAAGTAAGGTGAACTTCATGACGGG
CTTCGACACCACAGTGGGAGGTTTGCAAGCTCGCGTGACACGATGCGGGT
ATACGGGCGAGGATGGTTTCGAGGTGTCAGTGGCCTGGAAGGACGCGAGG
GCCTTGGCTGAGCTCTTTCTGGAAGGCCCGGGTATCCGACTGGCAGGGCT
CGGGGCCCGGGACTCCCTGAGGCTGGAGTCAGGGTTATGCTTGTATGGGA
ACGACATTGACGCCACTATTACGCCCGTGGAGGCAGCGCTTGGGTGGACT
ATGGGAGGACCGAAAGGCAGGCGTCGCAAGGAACAAGGCTTTTTGGGAGC
GGAGAAATTTCTGTCGCCGGAAGGGAAATTTCTACCCATTTCGAGGAAGC
GTGTCGGTCTAGCAGGCTTCAAGGCCCCAGCGCGGGCACACACCGAGATT
TTTGACCCGTCTGGAGTAAACAAAATCGGAGAAGTGACAAGCGGTACCTT
CAGTCCATCCTTGAACAAGCCCATTGCGATGGGCTATGTGGCAAAAGAGT
TCTCGGCTGAGGGGAGCAAGGTAGCCGTGAAGGTGCGGGGGAAATTGCAA
GGGGCAGACGTGACCAAAATGCCATTTGTGACACAGCATTATTACAAAGC
TCCCTAG
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Coding sequence (CDS) from alignment at CM002462.1:429012..430418+

>rna3924 ID=rna3924|Name=rna3924|organism=Nannochloropsis gaditana|type=CDS|length=2526bp|location=Sequence derived from alignment at CM002462.1:429012..430418+ (Nannochloropsis gaditana)
ATGGCTCCGCGGGAGTCTGATTGGTTTTGTGGCGGAGCCTACATGTCCGC
AGGAGGGATCAATTTAGCAAGTCCTTTGGATTTGATGACCCCGCATCAAA
AGCTATCAAGCGATGATCGAGCCTTAGAAAAAACGGCATTGTTCGATATG
CACCTCGaaatgaaaggaaaaatGGTGCCTTTTGCAGGCTATGAGCTACC
AGTCCTGTACGAGATGCCGGAATGGGGCGGGATCGTCAAGGAGCACTTGC
ACTGCcgcgccaaggcctccgtcttCGACGTCTCCCACATGGGCCAGATC
AAGTGGCACGGAAAGGACCGCGTCAAATTTTTGGAGACTTTAGTAGTGGG
GGATGTGGCGGGTctgggcgtgggcgaggCACGGTTAAGCCTGCTCACAA
ACAAGGATGGCGGCATCATTGACGACACGATCATCACCAACGCGGGAGAT
TACACCTATATGATCGTCAACGGCGCaacaaagggaggggacatgGCTCA
TTTCAAAGAGCAGATGGAATCCTTCAAGGGGGATGTGTGCTTTGAGTACT
TCCACGAGCAGCAACTCTTggccctccaaggcccctcCGCGGCCGAGACC
CTCCAAGCTCTCTTGCCAGCCGATGTCGACCTAAGTAAGGTGAACTTCAT
GACGGGCTTCGACACCACAGTGGGAGGTTTGCAAGCTCGCGTGACACGAT
GCGGGTATACGGGCGAGGATGGTTTCGAGGTGTCAGTGGCCTGGAAGGAC
GCGAGGGCCTTGGCTGAGCTCTTTCTGGAAGGCCCGGGTATCCGACTGGC
AGGGCTCGGGGCCCGGGACTCCCTGAGGCTGGAGTCAGGGTTATGCTTGT
ATGGGAACGACATTGACGCCACTATTACGCCCGTGGAGGCAGCGCTTGGG
TGGACTATGGGAGGACCGAAAGGCAGGCGTCGCAAGGAACAAGGCTTTTT
GGGAGCGGAGAAATTTCTGTCGCCGGAAGGGAAATTTCTACCCATTTCGA
GGAAGCGTGTCGGTCTAGCAGGCTTCAAGGCCCCAGCGCGGGCACACACC
GAGATTTTTGACCCGTCTGGAGTAAACAAAATCGGAGAAGTGACAAGCGG
TACCTTCAGTCCATCCTTGAACAAGCCCATTGCGATGGGCTATGTGGCAA
AAGAGTTCTCGGCTGAGGGGAGCAAGGTAGCCGTGAAGGTGCGGGGGAAA
TTGCAAGGGGCAGACGTGACCAAAATGCCATTTGTGACACAGCATTATTA
CAAAGCTCCCTAGATGGCTCCGCGGGAGTCTGATTGGTTTTGTGGCGGAG
CCTACATGTCCGCAGGAGGGATCAATTTAGCAAGTCCTTTGGATTTGATG
ACCCCGCATCAAAAGCTATCAAGCGATGATCGAGCCTTAGAAAAAACGGC
ATTGTTCGATATGCACCTCGaaatgaaaggaaaaatGGTGCCTTTTGCAG
GCTATGAGCTACCAGTCCTGTACGAGATGCCGGAATGGGGCGGGATCGTC
AAGGAGCACTTGCACTGCcgcgccaaggcctccgtcttCGACGTCTCCCA
CATGGGCCAGATCAAGTGGCACGGAAAGGACCGCGTCAAATTTTTGGAGA
CTTTAGTAGTGGGGGATGTGGCGGGTctgggcgtgggcgaggCACGGTTA
AGCCTGCTCACAAACAAGGATGGCGGCATCATTGACGACACGATCATCAC
CAACGCGGGAGATTACACCTATATGATCGTCAACGGCGCaacaaagggag
gggacatgGCTCATTTCAAAGAGCAGATGGAATCCTTCAAGGGGGATGTG
TGCTTTGAGTACTTCCACGAGCAGCAACTCTTggccctccaaggcccctc
CGCGGCCGAGACCCTCCAAGCTCTCTTGCCAGCCGATGTCGACCTAAGTA
AGGTGAACTTCATGACGGGCTTCGACACCACAGTGGGAGGTTTGCAAGCT
CGCGTGACACGATGCGGGTATACGGGCGAGGATGGTTTCGAGGTGTCAGT
GGCCTGGAAGGACGCGAGGGCCTTGGCTGAGCTCTTTCTGGAAGGCCCGG
GTATCCGACTGGCAGGGCTCGGGGCCCGGGACTCCCTGAGGCTGGAGTCA
GGGTTATGCTTGTATGGGAACGACATTGACGCCACTATTACGCCCGTGGA
GGCAGCGCTTGGGTGGACTATGGGAGGACCGAAAGGCAGGCGTCGCAAGG
AACAAGGCTTTTTGGGAGCGGAGAAATTTCTGTCGCCGGAAGGGAAATTT
CTACCCATTTCGAGGAAGCGTGTCGGTCTAGCAGGCTTCAAGGCCCCAGC
GCGGGCACACACCGAGATTTTTGACCCGTCTGGAGTAAACAAAATCGGAG
AAGTGACAAGCGGTACCTTCAGTCCATCCTTGAACAAGCCCATTGCGATG
GGCTATGTGGCAAAAGAGTTCTCGGCTGAGGGGAGCAAGGTAGCCGTGAA
GGTGCGGGGGAAATTGCAAGGGGCAGACGTGACCAAAATGCCATTTGTGA
CACAGCATTATTACAAAGCTCCCTAG
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Synonyms
Publications