rna3923, rna3923 (mRNA) Nannochloropsis gaditana

Overview
Namerna3923
Unique Namerna3923
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1871
Alignment locationCM002462.1:428671..428986 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g202.8255.mrna
Orig protein idgnl|cribi|Naga_100001g202.8255
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:428671..428986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g202gene3775Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3923rna3923-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26744.1cds3914Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3923 ID=rna3923|Name=rna3923|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp
GGTGACAAAAAGTAGCTGCCGCCGGCTTAAACCTGCCGCTCGAGCCGCGC
CATTCAACACGTTGGCGAACATACCTCGTAAGTGTATCAAGGAAAGCTCG
AGGAGAGCGTTAGGTACTCCTACGTGGCGTGAGGGAAGGTAAGCGCGGGG
GAAAACTTGAGCTCGGACGTGGAAGTGCAGTTTTTACCTAGAGGATACGG
TGAACGCCTTCAACAGGCATTCTTCGATCTCCGAATATTGCGCTTTCACA
TTATAGTAGCTGGTTGAACGATCGCATTCATCGACATTTCACTGGGCTCT
TTTGTTGGATCGTGCGTATTTTATAAGCGCATTTTAATTTTCTCTTATTC
CTTTCCAATTCTATGGTCACAGCGCGAACGACGTCACCAACTCGCTTTCT
GTTATTTTGCTCTAAAAGCATGCCGCATCAACGCCCTCTTTTCAGACGGG
TTATCAAGCTGTCGTTTCCTATGTTTTACCTTCTGTTTATTCAAACGATT
CATGCCTTTCCAGTGGGGAGGCCCGATGTTGGGAAGATTCTAGGTCCTGG
CGTCGGCGGGGCCTGGGATGACTACAAAGTCTCGGGCCCGGTGGTAAGGC
AAAGTAGAGATGGCTCGTGGAACATGTGGTATTACGGGAGGTCGAAAGAG
TTCAATAAGACTGCCAACCTCATTAATCTACCGTCCGGACACATCGGTCT
GTCGCAATCAAAGGATGGACTGACTGATTTCGCCCGCGTCAAGGGTCCTT
TGTTGGACGGGGCTGTGTTTGGCCCTAGCAGCAACGAGGCGGGCGGGAAG
GCGTTTGATTCCTTGCATGTGGGTATCGGCGACATCGTATGGGAGGAGGC
GCGGCAGCAATGGGTGATGTACTATTTTGGCGGGGACGGGGAGTACGGGC
CGACACCTTACGGACAAGCACGAGGAATATACATGAAGATCGGGAAAGCC
GAGAGTCCTGATGGTGTGCAATGGTCGCGCGCGCCCGGGGTTTTGCTAGA
CAAGGGAGCTGCGGGAGATTTCGACGCCCTTTTTGTCGGTTGGCCCCAGG
TGGTGGACTTTGGCAAGGCAGATGTCATTCCGGGAATGAAGCAAGGTATG
TTCTACCACACATTCAATGCTGTGACCTTCGGCTTTGAAATAGGATTGGC
GACGTCTTCGGATACGACCGGTAATAAGTGGATAAAGCGTGGACCGATCC
ACCTGCCACGGGGCGCCCCGGGTTCGTACTGCGACCTTGGCCACGCCACC
CGATGCGTCATTCCAGACCCAGCCAACAGGAAAAAATTGTTGATGTTCGC
CGAGTGCGCAAACACCCAGAACAGCAACTGTATCGCCGTTTACGGCTCGA
ATGACGGGCTACTTTGGGAAAACATGCACCCGGCTGGCCCTGTCTTCGTC
GGTGCGGGGAAGGGCTCAGGCCGCTGGGATGCACAGGCCTTGGGCTGTCC
CAGTGTAACCGTGAGGGACGGTTGTTTCTATATGTACTACGTGGGCTTCA
CTGAGTCTTCCTCAGAGGGTGCAGCCCTGGGATGTATTGGGCTGGCAGTG
AGCGACGGCATGGACTTTACAAAATGGAAAAGAATGGGGGAATAGGGAAG
AGTATTTGCATTTTGTCGAAATCAGCGCATGTACAGAAACGTTAGGCTGT
TGTGTATTTATCGTGCACGCACAGGGGGAAGAGATGGAAACAGGGAAGAG
CGTGACGTCACACAGCTCGCGTATCAGAGAGACAAATGTTCTTAAAATGG
TAACAATAAGATTACCAGTATCAGATCTTTAATGGCGCGCATTGACCTAG
CGATCTCATTGATTGTTTTTATTGGACGTGGTCTTCTCTTGAATCTTAAA
GAATTCCGCCAACCGAAATCG
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protein sequence of rna3923

>rna3923-protein ID=rna3923-protein|Name=rna3923|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MPVEGVHRVPNALLELSLIHLRGMFANVLNGAARAAGLSRRQLLFVTSAR
RSLGTEVRQQYSNNNNNNIYVRTSVVAQ
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mRNA from alignment at CM002462.1:428671..428986+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3923 ID=rna3923|Name=rna3923|organism=Nannochloropsis gaditana|type=mRNA|length=316bp|location=Sequence derived from alignment at CM002462.1:428671..428986+ (Nannochloropsis gaditana)
ATGCCTGTTGAAGGCGTTCACCGTATCCTCTAGGTAAAAACTGCACTTCC
ACGTCCGAGCTCAAGTTTTCCCCCGCGCTTACCTTCCCTCACGCCACGTA
GGAGTACCTAACGCTCTCCTCGAGCTTTCCTTGATACACTTACGAGGTAT
GTTCGCCAACGTGTTGAATGGCGCGGCTCGAGCGGCAGGTTTAAGCCGGC
GGCAGCTACTTTTTGTCACCTCAGCTCGCCGTTCCCTTGGAACTGAGGTG
AGACAGCAATACTcaaataataataataataatatcTACGTCAGAACCTC
GGTTGTGGCTCAATAA
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Coding sequence (CDS) from alignment at CM002462.1:428671..428986+

>rna3923 ID=rna3923|Name=rna3923|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002462.1:428671..428986+ (Nannochloropsis gaditana)
ATGCCTGTTGAAGGCGTTCACCGAGTACCTAACGCTCTCCTCGAGCTTTC
CTTGATACACTTACGAGGTATGTTCGCCAACGTGTTGAATGGCGCGGCTC
GAGCGGCAGGTTTAAGCCGGCGGCAGCTACTTTTTGTCACCTCAGCTCGC
CGTTCCCTTGGAACTGAGGTGAGACAGCAATACTcaaataataataataa
taatatcTACGTCAGAACCTCGGTTGTGGCTCAATAAATGCCTGTTGAAG
GCGTTCACCGAGTACCTAACGCTCTCCTCGAGCTTTCCTTGATACACTTA
CGAGGTATGTTCGCCAACGTGTTGAATGGCGCGGCTCGAGCGGCAGGTTT
AAGCCGGCGGCAGCTACTTTTTGTCACCTCAGCTCGCCGTTCCCTTGGAA
CTGAGGTGAGACAGCAATACTcaaataataataataataatatcTACGTC
AGAACCTCGGTTGTGGCTCAATAA
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Synonyms
Publications