rna3922, rna3922 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3922
Unique Name	rna3922
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2100
Alignment location	CM002462.1:427020..428890 -

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Properties


Property Name	Value
Product	Glycosyl hydrolase family 43, five-bladed beta-propellor domain protein
Orig transcript id	gnl\|cribi\|Naga_100001g203.8158.mrna
Orig protein id	gnl\|cribi\|Naga_100001g203.8158
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:427020..428890 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g203	gene3774	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26647.1	cds3913	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3922	rna3922-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:427020..428890-
coding sequence from alignment at CM002462.1:427020..428890-

mRNA sequence

>rna3922 ID=rna3922|Name=rna3922|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp
GATGTGGACGAGCTGCTGGCGGGAAACTACAGGGGAATGGCGAACATGGC
CCTGCTGGTGGGGAAATGGCTGCAAGAGCTGGGGGGGGACGGGGCAGAGC
CCGACATGGACGGGCAAGAGCTGGTGCTGGAGCACCTGAGGGGGGAGATC
AAGGGCCGCTTCGATGTGGACAAGGCCGACGCGCTCCTCTTCGGGCGGAA
GCAGGACATGGTCTTCATCGACGACATGATGGGCTACCGGCGATGGCGGC
GGACGCTGATGGAGATCTTCGCGCAGCATAAGGAGAGCAAGCTACTGGGC
GGCTACTGCATGCAGCACTTGTCGAGGACGGGCCACAACACGGAGATGGC
TGACCTGGTGTCGGTGGAGGACTACTGGAGTGTGGCGCGCGGGGTGGTGA
CGGAGCTGCTGGCCGAGGTGCCTTGGGCGGACCACGTCCATCTGTCCCGG
CTTTCGGCCAACTTAAAGCGGATTTGCTGCTCGACTGCCTACTTGCACGC
CTTCTCCCAAGATGTCCTTTGGGGCTTGGAGAGCAAACTGCTCGTTCGGG
CTGACGCCTCTCGGGACACAAGCAATATCAGCACGGCACAGGGTCTAATG
GCTGCTAATCGCAGGTTCCGTCGCATTCGTCAGGAACTAGAGAGTGCTGC
GTGGGAGGCGGCCGAACAAGGGATAGGTGCAGCCGGGGCGAGTCAGGGGG
GAAGCTGGTACAACCGCTGTCGATTTGTGCACCGACTGAGTGCATGGCAA
GCTGAAGCTCCACCATTGAATCTGACCGAAGAGGACGATCCGATGGAGGC
GGTTGAGAAACGCCGAAGAGTGGTGGACATGCTGGTGGTGCTCTTCAGTG
AGGGGCGCTTGACGGATGTGGCGGCGGCGACCCTGCTCGAAACATACGTG
GACGCCAATATTTTGTTCACAGAGAGAAAAGAGGCGCGCACAGGGGCCGG
GGAGATCCCCGGATCGACAACAGGCGAGGAGGGCGAGGAGGGCGAGGAGG
ACGAGGACGGGCACGACATTGCCCAAATTCGAGGCCCACTGGCCTTTCTG
CGCCATCCACGACTCCTGGAGGTCCTGGTGCGAGCGATCTTTGACCCCAA
GGACCGCTTAGACACGGAAACTCGACGGGCGTCCGCCTGCCAGGTGCTGG
CCGTAGCAAGCACGGCGCTGGAGGACGGGAGCGTGGACCGAGAGGAGGCA
GATGCCCTCTACGGGGGCTTGCGGCAGGCTTCAGCCCTCCTTGCCGACGA
GGAGATGCTCCGCTGGAACATGTGCACGTCAGGAATGCCCCCTGTCCTGA
AAGGGCTCCTACGGGCGCACCCCGTGGTGGCCATGGGTTTCTTGCACTGG
CTGCGTGTCACAATCCAAGACCCAGAGTTCCACAACTCCCGGCAATTTAA
CGAGGTCATGCATGTATTCATGCGCCTCCTCCAGTTCCTGGTCTTGGAGC
GACCCTTGCACCACCCCGCAATCTTTGAGGCATTGGAGGCCCTGCTGACC
CTTAAGCCGACGGAAAGCTCCTTTAACATTATCAAGATGAAACGGCAAGC
CCTGCAGTGCTGCGTTTTTCTCATGTCGCATGGCTTTGTCCTCCCGGTCG
TGGCCTTCTTCCACGAAAATCTCGCCGAAATGGACCATGCCTTGGTTCGG
CACTTCCTCGGGCTGACACTCGTGGCTGCCCAGCCACCGTATTCTTCCGT
GTTTGCGTGTGCTTTGGCCTCCCTGCTCCGCGAAACAGTCGTGAGCAAGG
CTCTGCGCTCGAGTTTGGACGAGGCCCCCAAGCGCGCACTGGTCAAGTTC
ATAGAAACAGTTTGCGAAAATGACACGGAAGCAAAGAGTAATGGCGACTA
TAAACAACTTCAAGATATACCGGGATTATCGGATGGCCCCGCTGCCAGCA
AAAGTATGCTTTTAGACCCCGCTATGCGCAAGGGCTTGCGGTTGGTTTAC
TCAGACATGCTAAAAAAGAGGGAGAGTGACAGACAGACATACGATCGGGC
GGACAAGAGTGGAGGAGGGCAGTGAAGGATACCCGCATTGCCGTGAAGGG
GGTAAAAACAAAGTATAAGCTTTTAAAGAAAATAAAATTATGCCTTCGCG

protein sequence of rna3922

>rna3922-protein ID=rna3922-protein|Name=rna3922|organism=Nannochloropsis gaditana|type=polypeptide|length=410bp
MVTARTTSPTRFLLFCSKSMPHQRPLFRRVIKLSFPMFYLLFIQTIHAFP
VGRPDVGKILGPGVGGAWDDYKVSGPVVRQSRDGSWNMWYYGRSKEFNKT
ANLINLPSGHIGLSQSKDGLTDFARVKGPLLDGAVFGPSSNEAGGKAFDS
LHVGIGDIVWEEARQQWVMYYFGGDGEYGPTPYGQARGIYMKIGKAESPD
GVQWSRAPGVLLDKGAAGDFDALFVGWPQVVDFGKADVIPGMKQGMFYHT
FNAVTFGFEIGLATSSDTTGNKWIKRGPIHLPRGAPGSYCDLGHATRCVI
PDPANRKKLLMFAECANTQNSNCIAVYGSNDGLLWENMHPAGPVFVGAGK
GSGRWDAQALGCPSVTVRDGCFYMYYVGFTESSSEGAALGCIGLAVSDGM
DFTKWKRMGE

mRNA from alignment at CM002462.1:427020..428890-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3922 ID=rna3922|Name=rna3922|organism=Nannochloropsis gaditana|type=mRNA|length=1871bp|location=Sequence derived from alignment at CM002462.1:427020..428890- (Nannochloropsis gaditana)
GGTGACAAAAAGTAGCTGCCGCCGGCTTAAACCTGCCGCTCGAGCCGCGC
CATTCAACACGTTGGCGAACATACCTCGTAAGTGTATCAAGGAAAGCTCG
AGGAGAGCGTTAGGTACTCCTACGTGGCGTGAGGGAAGGTAAGCGCGGGG
GAAAACTTGAGCTCGGACGTGGAAGTGCAGTTTTTACCTAGAGGATACGG
TGAACGCCTTCAACAGGCATTCTTCGATCTCCGAATATTGCGCTTTCACA
TTATAGTAGCTGGTTGAACGATCGCATTCATCGACATTTCACTGGGCTCT
TTTGTTGGATCGTGCGTATTTTATAAGCGCATTTTAATTTTCTCTTATTC
CTTTCCAATTCTATGGTCACAGCGCGAACGACGTCACCAACTCGCTTTCT
GTTATTTTGCTCTAAAAGCATGCCGCATCAACGCCCTCTTTTCAGACGGG
TTATCAAGCTGTCGTTTCCTATGTTTTACCTTCTGTTTATTCAAACGATT
CATGCCTTTCCAGTGGGGAGGCCCGATGTTGGGAAGATTCTAGGTCCTGG
CGTCGGCGGGGCCTGGGATGACTACAAAGTCTCGGGCCCGGTGGTAAGGC
AAAGTAGAGATGGCTCGTGGAACATGTGGTATTACGGGAGGTCGAAAGAG
TTCAATAAGACTGCCAACCTCATTAATCTACCGTCCGGACACATCGGTCT
GTCGCAATCAAAGGATGGACTGACTGATTTCGCCCGCGTCAAGGGTCCTT
TGTTGGACGGGGCTGTGTTTGGCCCTAGCAGCAACGAGGCGGGCGGGAAG
GCGTTTGATTCCTTGCATGTGGGTATCGGCGACATCGTATGGGAGGAGGC
GCGGCAGCAATGGGTGATGTACTATTTTGGCGGGGACGGGGAGTACGGGC
CGACACCTTACGGACAAGCACGAGGAATATACATGAAGATCGGGAAAGCC
GAGAGTCCTGATGGTGTGCAATGGTCGCGCGCGCCCGGGGTTTTGCTAGA
CAAGGGAGCTGCGGGAGATTTCGACGCCCTTTTTGTCGGTTGGCCCCAGG
TGGTGGACTTTGGCAAGGCAGATGTCATTCCGGGAATGAAGCAAGGTATG
TTCTACCACACATTCAATGCTGTGACCTTCGGCTTTGAAATAGGATTGGC
GACGTCTTCGGATACGACCGGTAATAAGTGGATAAAGCGTGGACCGATCC
ACCTGCCACGGGGCGCCCCGGGTTCGTACTGCGACCTTGGCCACGCCACC
CGATGCGTCATTCCAGACCCAGCCAACAGGAAAAAATTGTTGATGTTCGC
CGAGTGCGCAAACACCCAGAACAGCAACTGTATCGCCGTTTACGGCTCGA
ATGACGGGCTACTTTGGGAAAACATGCACCCGGCTGGCCCTGTCTTCGTC
GGTGCGGGGAAGGGCTCAGGCCGCTGGGATGCACAGGCCTTGGGCTGTCC
CAGTGTAACCGTGAGGGACGGTTGTTTCTATATGTACTACGTGGGCTTCA
CTGAGTCTTCCTCAGAGGGTGCAGCCCTGGGATGTATTGGGCTGGCAGTG
AGCGACGGCATGGACTTTACAAAATGGAAAAGAATGGGGGAATAGGGAAG
AGTATTTGCATTTTGTCGAAATCAGCGCATGTACAGAAACGTTAGGCTGT
TGTGTATTTATCGTGCACGCACAGGGGGAAGAGATGGAAACAGGGAAGAG
CGTGACGTCACACAGCTCGCGTATCAGAGAGACAAATGTTCTTAAAATGG
TAACAATAAGATTACCAGTATCAGATCTTTAATGGCGCGCATTGACCTAG
CGATCTCATTGATTGTTTTTATTGGACGTGGTCTTCTCTTGAATCTTAAA
GAATTCCGCCAACCGAAATCG

Coding sequence (CDS) from alignment at CM002462.1:427020..428890-

>rna3922 ID=rna3922|Name=rna3922|organism=Nannochloropsis gaditana|type=CDS|length=1233bp|location=Sequence derived from alignment at CM002462.1:427020..428890- (Nannochloropsis gaditana)
ATGGTCACAGCGCGAACGACGTCACCAACTCGCTTTCTGTTATTTTGCTC
TAAAAGCATGCCGCATCAACGCCCTCTTTTCAGACGGGTTATCAAGCTGT
CGTTTCCTATGTTTTACCTTCTGTTTATTCAAACGATTCATGCCTTTCCA
GTGGGGAGGCCCGATGTTGGGAAGATTCTAGGTCCTGGCGTCGGCGGGGC
CTGGGATGACTACAAAGTCTCGGGCCCGGTGGTAAGGCAAAGTAGAGATG
GCTCGTGGAACATGTGGTATTACGGGAGGTCGAAAGAGTTCAATAAGACT
GCCAACCTCATTAATCTACCGTCCGGACACATCGGTCTGTCGCAATCAAA
GGATGGACTGACTGATTTCGCCCGCGTCAAGGGTCCTTTGTTGGACGGGG
CTGTGTTTGGCCCTAGCAGCAACGAGGCGGGCGGGAAGGCGTTTGATTCC
TTGCATGTGGGTATCGGCGACATCGTATGGGAGGAGGCGCGGCAGCAATG
GGTGATGTACTATTTTGGCGGGGACGGGGAGTACGGGCCGACACCTTACG
GACAAGCACGAGGAATATACATGAAGATCGGGAAAGCCGAGAGTCCTGAT
GGTGTGCAATGGTCGCGCGCGCCCGGGGTTTTGCTAGACAAGGGAGCTGC
GGGAGATTTCGACGCCCTTTTTGTCGGTTGGCCCCAGGTGGTGGACTTTG
GCAAGGCAGATGTCATTCCGGGAATGAAGCAAGGTATGTTCTACCACACA
TTCAATGCTGTGACCTTCGGCTTTGAAATAGGATTGGCGACGTCTTCGGA
TACGACCGGTAATAAGTGGATAAAGCGTGGACCGATCCACCTGCCACGGG
GCGCCCCGGGTTCGTACTGCGACCTTGGCCACGCCACCCGATGCGTCATT
CCAGACCCAGCCAACAGGAAAAAATTGTTGATGTTCGCCGAGTGCGCAAA
CACCCAGAACAGCAACTGTATCGCCGTTTACGGCTCGAATGACGGGCTAC
TTTGGGAAAACATGCACCCGGCTGGCCCTGTCTTCGTCGGTGCGGGGAAG
GGCTCAGGCCGCTGGGATGCACAGGCCTTGGGCTGTCCCAGTGTAACCGT
GAGGGACGGTTGTTTCTATATGTACTACGTGGGCTTCACTGAGTCTTCCT
CAGAGGGTGCAGCCCTGGGATGTATTGGGCTGGCAGTGAGCGACGGCATG
GACTTTACAAAATGGAAAAGAATGGGGGAATAG

Synonyms

Publications