rna3921, rna3921 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3921
Unique Name	rna3921
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1194
Alignment location	CM002462.1:423241..425340 -

Link to JBrowse

Properties


Property Name	Value
Product	th1-like protein
Orig transcript id	gnl\|cribi\|Naga_100001g204.8110.mrna
Orig protein id	gnl\|cribi\|Naga_100001g204.8110
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:423241..425340 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g204	gene3773	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26599.1	cds3912	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3921	rna3921-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:423241..425340-
coding sequence from alignment at CM002462.1:423241..425340-

mRNA sequence

>rna3921 ID=rna3921|Name=rna3921|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp
ATGCCAGCATATTTTTCATCTGATGTAAAAAGTCTTCACAGTAGTCGTTG
TGGGCAAGTGCAGCCTGCTAGCCTCTCGATAATTTCCAAAAGAACGAAAA
GGAAACGGCGACTACTTTGTGCAGCAGGCGAGGATATGTTTGACGACGAT
GATGAAGACGAAATGCAGGTTTTTATGACAAGAGATGGAGACTTTATTTT
CGCCGAGACAAGGACATGTTGGGATTTGGATGTATGGTTGAAGGGAGCTA
TGATTTCTCATAGTTCGTGCCCTACGAGCGAAGGTCCCTCGTTCGTTTCC
GTGTCTATTGGAGGAACCTCCCTTTCTAGCAGGTCCTTGGGAGCCGGGAT
AAGTGTGCCTGTCTGGAATCAGCGATTGTCCCTGGGCTGCCACCTCAGCA
ATGTGCCCTTAAAGATCCAATTATACACTGGCGGAAATCAACGGGTCCCG
TGTACAGAATGGGTTATGCCAGATTGGCTTGCACAGGCAGCGTTAAACGA
TATGCCGGTGGGAGGACCTGAAGAGGATGTTCAAAGCAACACCATTCCCT
TACTTGGTGGGCGAGCAACTCTAATGATTGAGCTTGCCTCATATATTCAC
CACGATCCACCGGCCAAAAGGGGTCCCGTGGCTCTGGACGATTTTACTTT
GAGTAGCGGAAAGGTAATCGGAGGCCTCATTGGAGGCTTCATCCTTACCA
TCCTCATCGTCTTTGTCTGCATGTGGTGCTGCTGTTCCTGCTGCTGTCCT
CGAGTGTATCAAGGACGACGTCTCTGGTTGCGGTCCATTTTAAGCCGCTC
GTCTAATGCAATCGGAACAGCGGCGCAAGCTAATGCCTCCACTTCCAGGC
CCATCCCGCCGCCTACAACAACTAGCAGAGCCCATTTCCCCCCCGCCCCT
CCACCGCATCTCCCCTCTCCTCCTCCATCCCGCTTCCTTAACAATCGTCC
TACGTATCTAAATCCCCAAGCAGCAGTGCCGTCCGCACCGCCAGCGCGCG
AAGCACCGGTCATGATGGCCATGCCAGTTGCTGAAGCCGTCAATACGTAT
CGGAGCGGGAATGTGCCCTTGGCGGAGGCGAGAATTCTCACAAGCTTCAA
CGCAGGCCGAGGCCAGGCAGGTGACAACGGCCGATACGGGGGCCGGCAAG
GGCGACAGGGAGGTTCTGAACACGATCGAAAGATCAGTGTGTAA

protein sequence of rna3921

>rna3921-protein ID=rna3921-protein|Name=rna3921|organism=Nannochloropsis gaditana|type=polypeptide|length=662bp
MANMALLVGKWLQELGGDGAEPDMDGQELVLEHLRGEIKGRFDVDKADAL
LFGRKQDMVFIDDMMGYRRWRRTLMEIFAQHKESKLLGGYCMQHLSRTGH
NTEMADLVSVEDYWSVARGVVTELLAEVPWADHVHLSRLSANLKRICCST
AYLHAFSQDVLWGLESKLLVRADASRDTSNISTAQGLMAANRRFRRIRQE
LESAAWEAAEQGIGAAGASQGGSWYNRCRFVHRLSAWQAEAPPLNLTEED
DPMEAVEKRRRVVDMLVVLFSEGRLTDVAAATLLETYVDANILFTERKEA
RTGAGEIPGSTTGEEGEEGEEDEDGHDIAQIRGPLAFLRHPRLLEVLVRA
IFDPKDRLDTETRRASACQVLAVASTALEDGSVDREEADALYGGLRQASA
LLADEEMLRWNMCTSGMPPVLKGLLRAHPVVAMGFLHWLRVTIQDPEFHN
SRQFNEVMHVFMRLLQFLVLERPLHHPAIFEALEALLTLKPTESSFNIIK
MKRQALQCCVFLMSHGFVLPVVAFFHENLAEMDHALVRHFLGLTLVAAQP
PYSSVFACALASLLRETVVSKALRSSLDEAPKRALVKFIETVCENDTEAK
SNGDYKQLQDIPGLSDGPAASKSMLLDPAMRKGLRLVYSDMLKKRESDRQ
TYDRADKSGGGQ

mRNA from alignment at CM002462.1:423241..425340-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3921 ID=rna3921|Name=rna3921|organism=Nannochloropsis gaditana|type=mRNA|length=2100bp|location=Sequence derived from alignment at CM002462.1:423241..425340- (Nannochloropsis gaditana)
GATGTGGACGAGCTGCTGGCGGGAAACTACAGGGGAATGGCGAACATGGC
CCTGCTGGTGGGGAAATGGCTGCAAGAGCTGGGGGGGGACGGGGCAGAGC
CCGACATGGACGGGCAAGAGCTGGTGCTGGAGCACCTGAGGGGGGAGATC
AAGGGCCGCTTCGATGTGGACAAGGCCGACGCGCTCCTCTTCGGGCGGAA
GCAGGACATGGTCTTCATCGACGACATGATGGGCTACCGGCGATGGCGGC
GGACGCTGATGGAGATCTTCGCGCAGCATAAGGAGAGCAAGCTACTGGGC
GGCTACTGCATGCAGCACTTGTCGAGGACGGGCCACAACACGGAGATGGC
TGACCTGGTGTCGGTGGAGGACTACTGGAGTGTGGCGCGCGGGGTGGTGA
CGGAGCTGCTGGCCGAGGTGCCTTGGGCGGACCACGTCCATCTGTCCCGG
CTTTCGGCCAACTTAAAGCGGATTTGCTGCTCGACTGCCTACTTGCACGC
CTTCTCCCAAGATGTCCTTTGGGGCTTGGAGAGCAAACTGCTCGTTCGGG
CTGACGCCTCTCGGGACACAAGCAATATCAGCACGGCACAGGGTCTAATG
GCTGCTAATCGCAGGTTCCGTCGCATTCGTCAGGAACTAGAGAGTGCTGC
GTGGGAGGCGGCCGAACAAGGGATAGGTGCAGCCGGGGCGAGTCAGGGGG
GAAGCTGGTACAACCGCTGTCGATTTGTGCACCGACTGAGTGCATGGCAA
GCTGAAGCTCCACCATTGAATCTGACCGAAGAGGACGATCCGATGGAGGC
GGTTGAGAAACGCCGAAGAGTGGTGGACATGCTGGTGGTGCTCTTCAGTG
AGGGGCGCTTGACGGATGTGGCGGCGGCGACCCTGCTCGAAACATACGTG
GACGCCAATATTTTGTTCACAGAGAGAAAAGAGGCGCGCACAGGGGCCGG
GGAGATCCCCGGATCGACAACAGGCGAGGAGGGCGAGGAGGGCGAGGAGG
ACGAGGACGGGCACGACATTGCCCAAATTCGAGGCCCACTGGCCTTTCTG
CGCCATCCACGACTCCTGGAGGTCCTGGTGCGAGCGATCTTTGACCCCAA
GGACCGCTTAGACACGGAAACTCGACGGGCGTCCGCCTGCCAGGTGCTGG
CCGTAGCAAGCACGGCGCTGGAGGACGGGAGCGTGGACCGAGAGGAGGCA
GATGCCCTCTACGGGGGCTTGCGGCAGGCTTCAGCCCTCCTTGCCGACGA
GGAGATGCTCCGCTGGAACATGTGCACGTCAGGAATGCCCCCTGTCCTGA
AAGGGCTCCTACGGGCGCACCCCGTGGTGGCCATGGGTTTCTTGCACTGG
CTGCGTGTCACAATCCAAGACCCAGAGTTCCACAACTCCCGGCAATTTAA
CGAGGTCATGCATGTATTCATGCGCCTCCTCCAGTTCCTGGTCTTGGAGC
GACCCTTGCACCACCCCGCAATCTTTGAGGCATTGGAGGCCCTGCTGACC
CTTAAGCCGACGGAAAGCTCCTTTAACATTATCAAGATGAAACGGCAAGC
CCTGCAGTGCTGCGTTTTTCTCATGTCGCATGGCTTTGTCCTCCCGGTCG
TGGCCTTCTTCCACGAAAATCTCGCCGAAATGGACCATGCCTTGGTTCGG
CACTTCCTCGGGCTGACACTCGTGGCTGCCCAGCCACCGTATTCTTCCGT
GTTTGCGTGTGCTTTGGCCTCCCTGCTCCGCGAAACAGTCGTGAGCAAGG
CTCTGCGCTCGAGTTTGGACGAGGCCCCCAAGCGCGCACTGGTCAAGTTC
ATAGAAACAGTTTGCGAAAATGACACGGAAGCAAAGAGTAATGGCGACTA
TAAACAACTTCAAGATATACCGGGATTATCGGATGGCCCCGCTGCCAGCA
AAAGTATGCTTTTAGACCCCGCTATGCGCAAGGGCTTGCGGTTGGTTTAC
TCAGACATGCTAAAAAAGAGGGAGAGTGACAGACAGACATACGATCGGGC
GGACAAGAGTGGAGGAGGGCAGTGAAGGATACCCGCATTGCCGTGAAGGG
GGTAAAAACAAAGTATAAGCTTTTAAAGAAAATAAAATTATGCCTTCGCG

Coding sequence (CDS) from alignment at CM002462.1:423241..425340-

>rna3921 ID=rna3921|Name=rna3921|organism=Nannochloropsis gaditana|type=CDS|length=1989bp|location=Sequence derived from alignment at CM002462.1:423241..425340- (Nannochloropsis gaditana)
ATGGCGAACATGGCCCTGCTGGTGGGGAAATGGCTGCAAGAGCTGGGGGG
GGACGGGGCAGAGCCCGACATGGACGGGCAAGAGCTGGTGCTGGAGCACC
TGAGGGGGGAGATCAAGGGCCGCTTCGATGTGGACAAGGCCGACGCGCTC
CTCTTCGGGCGGAAGCAGGACATGGTCTTCATCGACGACATGATGGGCTA
CCGGCGATGGCGGCGGACGCTGATGGAGATCTTCGCGCAGCATAAGGAGA
GCAAGCTACTGGGCGGCTACTGCATGCAGCACTTGTCGAGGACGGGCCAC
AACACGGAGATGGCTGACCTGGTGTCGGTGGAGGACTACTGGAGTGTGGC
GCGCGGGGTGGTGACGGAGCTGCTGGCCGAGGTGCCTTGGGCGGACCACG
TCCATCTGTCCCGGCTTTCGGCCAACTTAAAGCGGATTTGCTGCTCGACT
GCCTACTTGCACGCCTTCTCCCAAGATGTCCTTTGGGGCTTGGAGAGCAA
ACTGCTCGTTCGGGCTGACGCCTCTCGGGACACAAGCAATATCAGCACGG
CACAGGGTCTAATGGCTGCTAATCGCAGGTTCCGTCGCATTCGTCAGGAA
CTAGAGAGTGCTGCGTGGGAGGCGGCCGAACAAGGGATAGGTGCAGCCGG
GGCGAGTCAGGGGGGAAGCTGGTACAACCGCTGTCGATTTGTGCACCGAC
TGAGTGCATGGCAAGCTGAAGCTCCACCATTGAATCTGACCGAAGAGGAC
GATCCGATGGAGGCGGTTGAGAAACGCCGAAGAGTGGTGGACATGCTGGT
GGTGCTCTTCAGTGAGGGGCGCTTGACGGATGTGGCGGCGGCGACCCTGC
TCGAAACATACGTGGACGCCAATATTTTGTTCACAGAGAGAAAAGAGGCG
CGCACAGGGGCCGGGGAGATCCCCGGATCGACAACAGGCGAGGAGGGCGA
GGAGGGCGAGGAGGACGAGGACGGGCACGACATTGCCCAAATTCGAGGCC
CACTGGCCTTTCTGCGCCATCCACGACTCCTGGAGGTCCTGGTGCGAGCG
ATCTTTGACCCCAAGGACCGCTTAGACACGGAAACTCGACGGGCGTCCGC
CTGCCAGGTGCTGGCCGTAGCAAGCACGGCGCTGGAGGACGGGAGCGTGG
ACCGAGAGGAGGCAGATGCCCTCTACGGGGGCTTGCGGCAGGCTTCAGCC
CTCCTTGCCGACGAGGAGATGCTCCGCTGGAACATGTGCACGTCAGGAAT
GCCCCCTGTCCTGAAAGGGCTCCTACGGGCGCACCCCGTGGTGGCCATGG
GTTTCTTGCACTGGCTGCGTGTCACAATCCAAGACCCAGAGTTCCACAAC
TCCCGGCAATTTAACGAGGTCATGCATGTATTCATGCGCCTCCTCCAGTT
CCTGGTCTTGGAGCGACCCTTGCACCACCCCGCAATCTTTGAGGCATTGG
AGGCCCTGCTGACCCTTAAGCCGACGGAAAGCTCCTTTAACATTATCAAG
ATGAAACGGCAAGCCCTGCAGTGCTGCGTTTTTCTCATGTCGCATGGCTT
TGTCCTCCCGGTCGTGGCCTTCTTCCACGAAAATCTCGCCGAAATGGACC
ATGCCTTGGTTCGGCACTTCCTCGGGCTGACACTCGTGGCTGCCCAGCCA
CCGTATTCTTCCGTGTTTGCGTGTGCTTTGGCCTCCCTGCTCCGCGAAAC
AGTCGTGAGCAAGGCTCTGCGCTCGAGTTTGGACGAGGCCCCCAAGCGCG
CACTGGTCAAGTTCATAGAAACAGTTTGCGAAAATGACACGGAAGCAAAG
AGTAATGGCGACTATAAACAACTTCAAGATATACCGGGATTATCGGATGG
CCCCGCTGCCAGCAAAAGTATGCTTTTAGACCCCGCTATGCGCAAGGGCT
TGCGGTTGGTTTACTCAGACATGCTAAAAAAGAGGGAGAGTGACAGACAG
ACATACGATCGGGCGGACAAGAGTGGAGGAGGGCAGTGA

Synonyms

Publications