rna3920, rna3920 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3920
Unique Name	rna3920
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2037
Alignment location	CM002462.1:421456..423198 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g205.8216.mrna
Orig protein id	gnl\|cribi\|Naga_100001g205.8216
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:421456..423198 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g205	gene3772	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3920	rna3920-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26705.1	cds3911	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:421456..423198+
coding sequence from alignment at CM002462.1:421456..423198+

mRNA sequence

>rna3920 ID=rna3920|Name=rna3920|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp
ATGGCTCAAAGCAAGCCTGTACCGGTTACGCCGCGGGCCCGCCTTTCCGA
CCTCCTCCCCCCGCTGCTTTTCCCCTTACTCGTCATTGCAACCATGCCCC
GTGCTTCTGCCTTTACCTATTCTCCACTGCATCCAAAATCATATGTGAGC
CGCGTACCTGCGGCGATCGAGTCCACCGTCCGGGTGGCTTCCACAGCCAC
AGCCACGCCCGATCTGCCCCCCGAGGCTCTCATTCCAGCACCCCTTAATC
CGGTGCAGCGCCTCAGACGGGCGGCAACCTTTTGGTCTCAGGTGGTGCCT
ATTCTTGGTAATTATGCCTTAATACAGCGTAAACTTGCCGCTGCTAAAGA
GAAAGGCGATCCGGTGAGCCCCGAAGAGGAAGTCAAGCTCTGGGAAGATG
CCCACAATTGGGGAGCCGAGCGTCTGGCCTCCACGATCCAGACTCTGAAA
GGCTTCTACGTCAAGAGCGGCCAAGTCATTTCCACACGGGTGGACATGTT
TCCAAAGGCGTACACAGATCGCCTCATGTCTTTGCAAGACTCTGTGGAGC
CTGTCCCCATCTCCGTGGTCAAGGCCGTCGTCCGCCAGGACCTTCTAGAA
GGGGAGCCCTTGGAGAACTTGTTCAAAGAGTTCGACGAGGTCCCTTTAGG
TAGCGCGTCCATCGCTCAGGTGCACAGGGCGGTCCTTCGGGACGGGAGAG
AGGTGGCGGTGAAGGTGCAGAGACCGAGCGAGGAGCCCAAGCTACGGGGG
GACATAGCGAACCTGAAAGCCTTCTCCAAGCGTTTCCGCGACTCCTTGCC
GGTGGACTACTACCGCGTCTTCTTGGAGCTTGAACGGGCCTTGACCAACG
AACTCGATTTCCTCGCCGAAGCCCAAGCCATGGAGAAGATCGCCGCTGCG
GTAGCACACACCCCCGATGGACGCCCCGCAGTGGCACCCCTGGTGGTCCC
GCGAGCGATCAACGGCCTCGTCTCCAAGCGGGTCATCGTCATGGACTTCA
TCCATGGCACCCCCCTGACCCGGCTCAAGGACCGGATGGCTGAGCGGGGC
ATTCCCGAAGGCTCTCCCGAGGCTGCCATCTTTTCCCGGCGGCTCCTATC
CTCACTTACCGAGGCCTTCAGCCGCATGGTCTTCGGTGACGGCTTCTTGC
ACGGGGATCCCCACCCAGGGAACATCTTCGTCATGGAGGGTGGGGGTATC
GCCCTTATCGACTGCGGGCAGGTCAAGCAGATTGGCAACTCGCAAAAATT
GCGTCTGGCCGATTTGGTGTTGAAAGTTTCGCGATATGGCAAACCCGATG
GTCCGACGGCCATTGAGCTCTCCAAAACTGTGGAGGGGTTTGGCGTGGAG
TTTAAAGAGGGCGCTCGGCCCGAAATTGGGGCGGCCCTGGCTCTCTTACT
CTTCGGAGGCACAGGGACCATCTTGCCAGGTGGGTATAGCAGCATGGAAT
TAAGTGCCAGCAGCCCATTGCGGGAGATCAAGAGCTTTCCCAATGATTTA
GTCATGCTTGGCAGAGCCACCGTCATCATCAAAGGGATCGCAAGCAAAGT
CGGGGTTCCCTGGAACTTGGCGGACAGGTTTGCGGAGGGCGCCCAGATGG
CCCTTGAATGCGGGATGGATGGGTGCTCTGTACCCATTTACAGTACCATC
GCGCCGACTCGCTTGGGAAAAGAGATGCCTCGTACTGCGGGCGGGACCGG
AATAAGCCGTCGCCGTTTTTCGGAGGTCCGGGATGCATTTAGGATGGTGA
GGCAGGTGGCAAGAGAATGGGCGCTTGGAAAGGCTTGGGAGTCGTTGCCT
ACACCAGCCAAGCAATTTTTCATCCAGCGTGAGGCCCGCCGTTTGCAAAG
ACTCGAAGCAAGGGAGCAGGAAGAGGAGGATGAACTACGGAAGTTGAGGG
GGGGGCTCAACGAAAAATCCTCTCCTCCGTTGCCTCCTGGGCCATCGGTA
TCGGAAAATGATGTGTCTTCAGGAGACACAGAGCACGAAAATGTCATTTT
ATTGCCTACAGAAAAGGTGGCTTCCACGGATCACTGA

protein sequence of rna3920

>rna3920-protein ID=rna3920-protein|Name=rna3920|organism=Nannochloropsis gaditana|type=polypeptide|length=397bp
MPAYFSSDVKSLHSSRCGQVQPASLSIISKRTKRKRRLLCAAGEDMFDDD
DEDEMQVFMTRDGDFIFAETRTCWDLDVWLKGAMISHSSCPTSEGPSFVS
VSIGGTSLSSRSLGAGISVPVWNQRLSLGCHLSNVPLKIQLYTGGNQRVP
CTEWVMPDWLAQAALNDMPVGGPEEDVQSNTIPLLGGRATLMIELASYIH
HDPPAKRGPVALDDFTLSSGKVIGGLIGGFILTILIVFVCMWCCCSCCCP
RVYQGRRLWLRSILSRSSNAIGTAAQANASTSRPIPPPTTTSRAHFPPAP
PPHLPSPPPSRFLNNRPTYLNPQAAVPSAPPAREAPVMMAMPVAEAVNTY
RSGNVPLAEARILTSFNAGRGQAGDNGRYGGRQGRQGGSEHDRKISV

mRNA from alignment at CM002462.1:421456..423198+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3920 ID=rna3920|Name=rna3920|organism=Nannochloropsis gaditana|type=mRNA|length=1743bp|location=Sequence derived from alignment at CM002462.1:421456..423198+ (Nannochloropsis gaditana)
ATGCCAGCATATTTTTCATCTGATGTAAAAAGTCTTCACAGTAGTCGTTG
TGGGCAAGTGCAGCCTGCTAGCCTCTCGATAATTTCCAAAAGAACGAAAA
GGAAACGGCGACTACTTTGTGCAGCAGGCGGTAGATTTTGAATTTTAACC
GTCGCTCGCACGTTAGATGCCCGTTACCTCAACCGTTTTCAGGACAGACA
TTACGCGGGGGTTCTGCCTCCCCGTGTGTATCCGCCTTGGGGAAAGCGAC
GTGGATTGAACAACTGTGGGATGCCATAGCACCACATGGTATCAAGAGAT
GCGTAACCTTTGATCTTATACAAAAGTACAATGCCATTCGCCCTACCTCA
CTTTTTTGGGTCGTTTGAAGTGCCGAAGCACAACCGATGCATCTCTCCGC
ATTACTTATTGCCTCCCTTTATCATGATAACAAATATTTGCATTTAAAAG
TCACGCTGCCAATATCTATACGGATACATTGATGTATTCAATGTATCTTT
TACCCATTTATTCGTTCGCACTCATCAAAAGGTTGATGACATCTTTTCGA
GAAGAATTTACAGAAGCTCAGATGTACGTGTAGCCTGGAAAGCTAGTATC
CGATGTCTTCACTTTATATTTTCAATTCTTTACTACAGAATGGGGGTGAA
AAAGCGATCTCATCTTCACCATGAGAAAGAGGATATGTTTGACGACGATG
ATGAAGACGAAATGCAGGTTTTTATGACAAGAGATGGAGACTTTATTTTC
GCCGAGACAAGGACATGTTGGGATTTGGATGTATGGTTGAAGGGAGCTAT
GATTTCTCATAGTTCGTGCCCTACGAGCGAAGGTCCCTCGTTCGTTTCCG
TGTCTATTGGAGGAACCTCCCTTTCTAGCAGGTCCTTGGGAGCCGGGATA
AGTGTGCCTGTCTGGAATCAGCGATTGTCCCTGGGCTGCCACCTCAGCAA
TGTGCCCTTAAAGATCCAATTATACACTGGCGGAAATCAACGGGTCCCGT
GTACAGAATGGGTTATGCCAGATTGGCTTGCACAGGCAGCGTTAAACGAT
ATGCCGGTGGGAGGACCTGAAGAGGATGTTCAAAGCAACACCATTCCCTT
ACTTGGTGGGCGAGCAACTCTAATGATTGAGCTTGCCTCATATATTCACC
ACGATCCACCGGCCAAAAGGGGTCCCGTGGCTCTGGACGATTTTACTTTG
AGTAGCGGAAAGGTAATCGGAGGCCTCATTGGAGGCTTCATCCTTaccat
cctcatcgtcttTGTCTGCATGTGGTGCTGCTGTTCCTGCTGCTGTCCTC
GAGTGTATCAAGGACGACGTCTCTGGTTGCGGTCCATTTTAAGCCGCTCG
TCTAATGCAATCGGAACAGCGGCGCAAGCTAATGCCTCCACTTCCAGGCC
CATCCCGCCGCCTACAACAACTAGCAGAgcccatttcccccccgcccctc
caccgcatctcccctctcctcctccatcccgcttCCTTAACAATCGTCCT
ACGTATCTAAATCCCCAAGCAGCAGTGCCGTCCGCACCGCCAGCGCGCGA
AGCACCGGTCATGATGGCCATGCCAGTTGCTGAAGCCGTCAATACGTATC
GGAGCGGGAATGTGCccttggcggaggcgagAATTCTCACAAGCTTCAAC
GCAGGCCGAGGCCAGGCAGGTGACAACGGCCGATACGGGGGCCGGCAAGG
GCGACAGGGAGGTTCTGAACACGATCGAAAGATCAGTGTGTAA

Coding sequence (CDS) from alignment at CM002462.1:421456..423198+

>rna3920 ID=rna3920|Name=rna3920|organism=Nannochloropsis gaditana|type=CDS|length=2388bp|location=Sequence derived from alignment at CM002462.1:421456..423198+ (Nannochloropsis gaditana)
ATGCCAGCATATTTTTCATCTGATGTAAAAAGTCTTCACAGTAGTCGTTG
TGGGCAAGTGCAGCCTGCTAGCCTCTCGATAATTTCCAAAAGAACGAAAA
GGAAACGGCGACTACTTTGTGCAGCAGGCGAGGATATGTTTGACGACGAT
GATGAAGACGAAATGCAGGTTTTTATGACAAGAGATGGAGACTTTATTTT
CGCCGAGACAAGGACATGTTGGGATTTGGATGTATGGTTGAAGGGAGCTA
TGATTTCTCATAGTTCGTGCCCTACGAGCGAAGGTCCCTCGTTCGTTTCC
GTGTCTATTGGAGGAACCTCCCTTTCTAGCAGGTCCTTGGGAGCCGGGAT
AAGTGTGCCTGTCTGGAATCAGCGATTGTCCCTGGGCTGCCACCTCAGCA
ATGTGCCCTTAAAGATCCAATTATACACTGGCGGAAATCAACGGGTCCCG
TGTACAGAATGGGTTATGCCAGATTGGCTTGCACAGGCAGCGTTAAACGA
TATGCCGGTGGGAGGACCTGAAGAGGATGTTCAAAGCAACACCATTCCCT
TACTTGGTGGGCGAGCAACTCTAATGATTGAGCTTGCCTCATATATTCAC
CACGATCCACCGGCCAAAAGGGGTCCCGTGGCTCTGGACGATTTTACTTT
GAGTAGCGGAAAGGTAATCGGAGGCCTCATTGGAGGCTTCATCCTTacca
tcctcatcgtcttTGTCTGCATGTGGTGCTGCTGTTCCTGCTGCTGTCCT
CGAGTGTATCAAGGACGACGTCTCTGGTTGCGGTCCATTTTAAGCCGCTC
GTCTAATGCAATCGGAACAGCGGCGCAAGCTAATGCCTCCACTTCCAGGC
CCATCCCGCCGCCTACAACAACTAGCAGAgcccatttcccccccgcccct
ccaccgcatctcccctctcctcctccatcccgcttCCTTAACAATCGTCC
TACGTATCTAAATCCCCAAGCAGCAGTGCCGTCCGCACCGCCAGCGCGCG
AAGCACCGGTCATGATGGCCATGCCAGTTGCTGAAGCCGTCAATACGTAT
CGGAGCGGGAATGTGCccttggcggaggcgagAATTCTCACAAGCTTCAA
CGCAGGCCGAGGCCAGGCAGGTGACAACGGCCGATACGGGGGCCGGCAAG
GGCGACAGGGAGGTTCTGAACACGATCGAAAGATCAGTGTGTAAATGCCA
GCATATTTTTCATCTGATGTAAAAAGTCTTCACAGTAGTCGTTGTGGGCA
AGTGCAGCCTGCTAGCCTCTCGATAATTTCCAAAAGAACGAAAAGGAAAC
GGCGACTACTTTGTGCAGCAGGCGAGGATATGTTTGACGACGATGATGAA
GACGAAATGCAGGTTTTTATGACAAGAGATGGAGACTTTATTTTCGCCGA
GACAAGGACATGTTGGGATTTGGATGTATGGTTGAAGGGAGCTATGATTT
CTCATAGTTCGTGCCCTACGAGCGAAGGTCCCTCGTTCGTTTCCGTGTCT
ATTGGAGGAACCTCCCTTTCTAGCAGGTCCTTGGGAGCCGGGATAAGTGT
GCCTGTCTGGAATCAGCGATTGTCCCTGGGCTGCCACCTCAGCAATGTGC
CCTTAAAGATCCAATTATACACTGGCGGAAATCAACGGGTCCCGTGTACA
GAATGGGTTATGCCAGATTGGCTTGCACAGGCAGCGTTAAACGATATGCC
GGTGGGAGGACCTGAAGAGGATGTTCAAAGCAACACCATTCCCTTACTTG
GTGGGCGAGCAACTCTAATGATTGAGCTTGCCTCATATATTCACCACGAT
CCACCGGCCAAAAGGGGTCCCGTGGCTCTGGACGATTTTACTTTGAGTAG
CGGAAAGGTAATCGGAGGCCTCATTGGAGGCTTCATCCTTaccatcctca
tcgtcttTGTCTGCATGTGGTGCTGCTGTTCCTGCTGCTGTCCTCGAGTG
TATCAAGGACGACGTCTCTGGTTGCGGTCCATTTTAAGCCGCTCGTCTAA
TGCAATCGGAACAGCGGCGCAAGCTAATGCCTCCACTTCCAGGCCCATCC
CGCCGCCTACAACAACTAGCAGAgcccatttcccccccgcccctccaccg
catctcccctctcctcctccatcccgcttCCTTAACAATCGTCCTACGTA
TCTAAATCCCCAAGCAGCAGTGCCGTCCGCACCGCCAGCGCGCGAAGCAC
CGGTCATGATGGCCATGCCAGTTGCTGAAGCCGTCAATACGTATCGGAGC
GGGAATGTGCccttggcggaggcgagAATTCTCACAAGCTTCAACGCAGG
CCGAGGCCAGGCAGGTGACAACGGCCGATACGGGGGCCGGCAAGGGCGAC
AGGGAGGTTCTGAACACGATCGAAAGATCAGTGTGTAA

Synonyms

Publications