rna3918, rna3918 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3918
Unique Name	rna3918
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1265
Alignment location	CM002462.1:416617..418577 -

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Properties


Property Name	Value
Product	caax prenyl protease 1
Orig transcript id	gnl\|cribi\|Naga_100001g207.8197.mrna
Orig protein id	gnl\|cribi\|Naga_100001g207.8197
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:416617..418577 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g207	gene3770	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3918	rna3918-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26686.1	cds3909	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:416617..418577-
coding sequence from alignment at CM002462.1:416617..418577-

mRNA sequence

>rna3918 ID=rna3918|Name=rna3918|organism=Nannochloropsis gaditana|type=mRNA|length=1265bp
TGTAACAGGGTCATTGTCGCTACTGTGCATGGATCCATGTCTTCTTCAGC
CAGAGGCTTTTTCGAGTCCCTTGTCCGCCGACAAACTCGGCATCCTCATG
CCACGATAATACGTCCCTCGACCCGCACATGCTGCAAGCAACTTCTCATG
GTGTTAGCGGGCATGTTGGCCATGAGCCAAAGCTTCATGCTCAAATCACC
GCTACATGCCGTTTTAGACGGCAGCGTTGCTGTGTCGGCACGTCTGGCCC
CCGGGGGCATCCGAGTAGTAATGTCTATGTCATGTCCAGACCGGAGAGGC
CTGCTGGAGGGCTGGGCCTCCGTCTTTCTTGCTGTCGGCTTACCCCACGT
GGCACAGCCTACTCAGCGCGCACATGCTGTCAAGGACGATGAATATGATG
TCGCATTCGACGCGAAACAACCCCTGGGCTTGGCTTTGGAGGATTTCGGG
CAAAACGGCAAATATCGGACTTACGTGAGCAAGACCTTGCGAGGCTCACA
AGCCACGAGCAAAGGGATCCGCATTCCCGCGTTGGTCGTGGCCGTGAATG
GCAAAAATGTCGAAGGGCTCCCACGGAAAATGGTGGTGCAGCTCATACGG
GACGCGCAGGAGGGCCGTAATGGGATGGGTGAGGGATCGTCTTTGATGGT
AACTTTCCGCGACCCGGCTAAGTTCATGGAGCTGCTGAGCGAGAAGAGTA
CCCCGGGCGGGGGGGAGGGAGCAGAAATCAGCACTCAGCTCGCACCCCAG
ACTCAGGCCCGAGAGGCCCAAACCCTGACAGTTAAGAAGACGTACGTGCC
GGAGATCTGCCAGACGGGGGCCAAGTACGGCGATTTGCTCGAGATCAAGT
ACGCGACCCGCTTGGAGGACGGCACCTTTCTGGACGCCACGGGAGTCTCG
ACGCCCGGGCGGGGAGGGGACTCGACGCTCTACTTCGTGTTGGGGGAGCA
GGTGGCGGGCACGGTGCCGAAAGGCTGGGATCTGGCCTTGGTGGGCGCGT
GCGTGGGGGAGAAACGCAGGATCAAGACGCCGAGTGTGCTGGCCTTTGGG
GCCAAGGGGCTGAAGAGGAAAGGTATCCCCCCCGACGCCACCATCGTCTA
CGACGTGGAGGTGATTGGGATCAACGGCAACAACATTCCCCGTTGAGGGG
GAATACAGACAGTCGTTGCCACGCCTGGCGGCTGCTGTGTATGCCCACAC
GAGCCCAGACCGGTGACTCATGTCAAAAGAAACAGGGGGACTGGCGAAGG
TCCTGAGACTACTGA

protein sequence of rna3918

>rna3918-protein ID=rna3918-protein|Name=rna3918|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MIFGMPAVSAAGAADRWAHVRSFGTGLSLPVYRQKGAGEADVPYLELLIL
FSFIVFVWEFYLDVRQYRALQRKDIPSALTERIAELDSRATASGSAPPEQ
ASQYKDAPSPPAATSLLDRLTSKFEAARNYSIDKAHLGFVETAFSQTENT
TLLLLGSMPWFWDTSVELAGRWLGKRENEYVVSLVLLGLNMVLEQVVHLP
FSLWAVFVVEERHGFNKQSLGNFFLDKLKGLALSALLGGPMTLAVLYVIK
AGGRNFFLYLYLLVLAFQLLLLTIYPTVIAPLFNKYEPLPEDSELKIQID
ALASRVKFPLTKVFVVDGSRRSAHSNAYFYGFFKNKRIVLFDTLIAQVRP
SELLSVLAHELGHWAHSHTLQMFLVSQVHLFLAFFLFASSVDNAALFASF
GFSSRPTIIALLLFFQAIWSPVDKALSFVFTLWTRRNEFQVASQRPVPPC
SARPLTLSPPPGPFLQADEYAVGLGYSEDLQRGLVKLQIENLSNPSPDPW
YSFYHYSHPPLTERLAAIWARQQAVERKRE

mRNA from alignment at CM002462.1:416617..418577-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3918 ID=rna3918|Name=rna3918|organism=Nannochloropsis gaditana|type=mRNA|length=1961bp|location=Sequence derived from alignment at CM002462.1:416617..418577- (Nannochloropsis gaditana)
TGGTTACACGGTATTCAGTAAGAATCAACACACGACAACTCAACACACAG
GACAATGATCTTTGGGATGCCTGCAGTATCAGCCGCGGGCGCGGCGGATC
GCTGGGCGCACGTACGGTCGTTCGGAACTGGGCTTTCATTGCCTGTATAC
AGACAGAAAGGGGCTGGCGAGGCGGATGTGCCTTATTTGGAGCTTCTCAT
CCTGTTCAGCTTCATCGTCTTTGTGTGGGAATTCTACCTCGACGTCCGGC
AGTATCGTGCACTGCAGCGTAAGGACATTCCAAGCGCCTTAACAGAAAGG
ATCGCGGAGCTCGACAGCCGTGCCACCGCTAGCGGCAGTGCGCCGCCCGA
GCAGGCTTCTCAGTACAAGGATGCCCCCAGTCCTCCCGCTGCCACGTCTC
TCTTAGACCGTCTGACATCCAAATTCGAAGCCGCTCGAAATTACTCGATC
GACAAGGCCCATTTAGGTTTTGTGGAAACCGCCTTCTCGCAAACCGAGAA
CACCACCCTGCTTTTACTGGGCAGCATGCCCTGGTTCTGGGATACCTCTG
TAGAGCTGGCGGGTCGATGGCTGGGAAAGAGAGAGAACGAATACGTGGTC
TCCCTTGTCCTCCTGGGCCTGAACATGGTCCTCGAGCAAGTCGTGCACCT
GCCTTTTTCCCTGTGGGCCGTCTTCGTGGTCGAAGAGCGGCATGGGTTCA
ATAAGCAGAGTCTCGGCAACTTCTTCCTGGACAAGCTCAAGGGCCTCGCT
CTCTCCGCTCTCCTGGGGGGGCCCATGACATTGGCGGTGCTGTACGTGAT
CAAGGCTGGAGGACGGAACTTCTTCTTGTACCTATATCTGCTGGTGCTGG
CGTTTCAGCTCCTCCTCCTCACTATCTACCCCACGGTTATCGCCCCGCTC
TTCAACAAGTACGAACCCCTGCCGGAGGACTCGGAACTGAAGATTCAGAT
AGACGCTTTGGCCTCTCGTGTCAAGTTTCCGCTCACGAAAGTCTTCGTGG
TGGACGGTTCTCGACGTAGCGCCCATAGCAATGCCTACTTCTACGGCTTC
TTCAAGAACAAACGGATCGTCCTCTTCGACACCTTGATCGCTCAGGTAGG
ACCCCATCTGCCTCCTCCGCCGAGAAAGGCGGAAGGGAGGAAGGCGGCTC
TCCCGCATCCCTAGGGCCAGCTTGCGGCCAGGACGTCTGGGTCTCTCTGC
CTCTCCTCCTCTCTTCCCCCCCCCCGCTCATCCCCTCTCCCCGGCCCTTC
CTCCAGGTCCGACCCTCCGAGCTCCTCTCCGTCCTCGCCCACGAGCTGGG
CCACTGGGCGCACTCCCACACCTTGCAGATGTTTCTGGTAAGTCAAGTGC
ACCTTTTCCTTGCCTTCTTCCTCTTCGCCTCTTCCGTGGACAATGCCGCG
CTCTTTGCCTCCTTCGGCTTCTCCTCCCGCCCCACCATCATTGCCCTTCT
GCTCTTCTTCCAAGCGATCTGGTCGCCTGTCGATAAAGCATTAAGCTTCG
TTTTTACCCTCTGGACCCGCAGGAATGAATTTCAGGTAGCGAGTCAGCGG
CCCGTGCCTCCCTGCTCCGCCCGACCACTCACTCTCTCCCCCCCTCCCGG
GCCCTTTCTCCAGGCGGACGAGTACGCAGTGGGCCTGGGCTACTCCGAGG
ACCTGCAGCGGGGGCTCGTCAAGCTGCAGATCGAGAACCTGAGCAACCCC
TCGCCCGACCCCTGGTACAGCTTTTACCACTACTCGCACCCGCCCCTGAC
AGAGCGACTGGCAGCCATTTGGGCGCGCCAGCAGGCGGTAGAGAGGAAGC
GGGAATAGTGGGAGCTGGGGAGAGCAAAGGAGGGGGTACTATGGAAGGTC
GGGTGAATCTAAGGGAAGGAATCCACGAGTCCGGCAGTTGGAAAGAAAAC
CCGCATCCTGCCGGTCAAGATCATTCAAATCAAAGTAAAGCACGCTTGGA
ATCAGTAGTCT

Coding sequence (CDS) from alignment at CM002462.1:416617..418577-

>rna3918 ID=rna3918|Name=rna3918|organism=Nannochloropsis gaditana|type=CDS|length=3186bp|location=Sequence derived from alignment at CM002462.1:416617..418577- (Nannochloropsis gaditana)
GTCCGACCCTCCGAGCTCCTCTCCGTCCTCGCCCACGAGCTGGGCCACTG
GGCGCACTCCCACACCTTGCAGATGTTTCTGGTAAGTCAAGTGCACCTTT
TCCTTGCCTTCTTCCTCTTCGCCTCTTCCGTGGACAATGCCGCGCTCTTT
GCCTCCTTCGGCTTCTCCTCCCGCCCCACCATCATTGCCCTTCTGCTCTT
CTTCCAAGCGATCTGGTCGCCTGTCGATAAAGCATTAAGCTTCGTTTTTA
CCCTCTGGACCCGCAGGAATGAATTTCAGGTAGCGAGTCAGCGGCCCGTG
CCTCCCTGCTCCGCCCGACCACTCACTCTCTCCCCCCCTCCCGGGCCCTT
TCTCCAGGCGGACGAGTACGCAGTGGGCCTGGGCTACTCCGAGGACCTGC
AGCGGGGGCTCGTCAAGCTGCAGATCGAGAACCTGAGCAACCCCTCGCCC
GACCCCTGGTACAGCTTTTACCACTACTCGCACCCGCCCCTGACAGAGCG
ACTGGCAGCCATTTGGGCGCGCCAGCAGGCGGTAGAGAGGAAGCGGGAAT
AGATGATCTTTGGGATGCCTGCAGTATCAGCCGCGGGCGCGGCGGATCGC
TGGGCGCACGTACGGTCGTTCGGAACTGGGCTTTCATTGCCTGTATACAG
ACAGAAAGGGGCTGGCGAGGCGGATGTGCCTTATTTGGAGCTTCTCATCC
TGTTCAGCTTCATCGTCTTTGTGTGGGAATTCTACCTCGACGTCCGGCAG
TATCGTGCACTGCAGCGTAAGGACATTCCAAGCGCCTTAACAGAAAGGAT
CGCGGAGCTCGACAGCCGTGCCACCGCTAGCGGCAGTGCGCCGCCCGAGC
AGGCTTCTCAGTACAAGGATGCCCCCAGTCCTCCCGCTGCCACGTCTCTC
TTAGACCGTCTGACATCCAAATTCGAAGCCGCTCGAAATTACTCGATCGA
CAAGGCCCATTTAGGTTTTGTGGAAACCGCCTTCTCGCAAACCGAGAACA
CCACCCTGCTTTTACTGGGCAGCATGCCCTGGTTCTGGGATACCTCTGTA
GAGCTGGCGGGTCGATGGCTGGGAAAGAGAGAGAACGAATACGTGGTCTC
CCTTGTCCTCCTGGGCCTGAACATGGTCCTCGAGCAAGTCGTGCACCTGC
CTTTTTCCCTGTGGGCCGTCTTCGTGGTCGAAGAGCGGCATGGGTTCAAT
AAGCAGAGTCTCGGCAACTTCTTCCTGGACAAGCTCAAGGGCCTCGCTCT
CTCCGCTCTCCTGGGGGGGCCCATGACATTGGCGGTGCTGTACGTGATCA
AGGCTGGAGGACGGAACTTCTTCTTGTACCTATATCTGCTGGTGCTGGCG
TTTCAGCTCCTCCTCCTCACTATCTACCCCACGGTTATCGCCCCGCTCTT
CAACAAGTACGAACCCCTGCCGGAGGACTCGGAACTGAAGATTCAGATAG
ACGCTTTGGCCTCTCGTGTCAAGTTTCCGCTCACGAAAGTCTTCGTGGTG
GACGGTTCTCGACGTAGCGCCCATAGCAATGCCTACTTCTACGGCTTCTT
CAAGAACAAACGGATCGTCCTCTTCGACACCTTGATCGCTCAGGTCCGAC
CCTCCGAGCTCCTCTCCGTCCTCGCCCACGAGCTGGGCCACTGGGCGCAC
TCCCACACCTTGCAGATGTTTCTGGTAAGTCAAGTGCACCTTTTCCTTGC
CTTCTTCCTCTTCGCCTCTTCCGTGGACAATGCCGCGCTCTTTGCCTCCT
TCGGCTTCTCCTCCCGCCCCACCATCATTGCCCTTCTGCTCTTCTTCCAA
GCGATCTGGTCGCCTGTCGATAAAGCATTAAGCTTCGTTTTTACCCTCTG
GACCCGCAGGAATGAATTTCAGGTAGCGAGTCAGCGGCCCGTGCCTCCCT
GCTCCGCCCGACCACTCACTCTCTCCCCCCCTCCCGGGCCCTTTCTCCAG
GCGGACGAGTACGCAGTGGGCCTGGGCTACTCCGAGGACCTGCAGCGGGG
GCTCGTCAAGCTGCAGATCGAGAACCTGAGCAACCCCTCGCCCGACCCCT
GGTACAGCTTTTACCACTACTCGCACCCGCCCCTGACAGAGCGACTGGCA
GCCATTTGGGCGCGCCAGCAGGCGGTAGAGAGGAAGCGGGAATAGATGAT
CTTTGGGATGCCTGCAGTATCAGCCGCGGGCGCGGCGGATCGCTGGGCGC
ACGTACGGTCGTTCGGAACTGGGCTTTCATTGCCTGTATACAGACAGAAA
GGGGCTGGCGAGGCGGATGTGCCTTATTTGGAGCTTCTCATCCTGTTCAG
CTTCATCGTCTTTGTGTGGGAATTCTACCTCGACGTCCGGCAGTATCGTG
CACTGCAGCGTAAGGACATTCCAAGCGCCTTAACAGAAAGGATCGCGGAG
CTCGACAGCCGTGCCACCGCTAGCGGCAGTGCGCCGCCCGAGCAGGCTTC
TCAGTACAAGGATGCCCCCAGTCCTCCCGCTGCCACGTCTCTCTTAGACC
GTCTGACATCCAAATTCGAAGCCGCTCGAAATTACTCGATCGACAAGGCC
CATTTAGGTTTTGTGGAAACCGCCTTCTCGCAAACCGAGAACACCACCCT
GCTTTTACTGGGCAGCATGCCCTGGTTCTGGGATACCTCTGTAGAGCTGG
CGGGTCGATGGCTGGGAAAGAGAGAGAACGAATACGTGGTCTCCCTTGTC
CTCCTGGGCCTGAACATGGTCCTCGAGCAAGTCGTGCACCTGCCTTTTTC
CCTGTGGGCCGTCTTCGTGGTCGAAGAGCGGCATGGGTTCAATAAGCAGA
GTCTCGGCAACTTCTTCCTGGACAAGCTCAAGGGCCTCGCTCTCTCCGCT
CTCCTGGGGGGGCCCATGACATTGGCGGTGCTGTACGTGATCAAGGCTGG
AGGACGGAACTTCTTCTTGTACCTATATCTGCTGGTGCTGGCGTTTCAGC
TCCTCCTCCTCACTATCTACCCCACGGTTATCGCCCCGCTCTTCAACAAG
TACGAACCCCTGCCGGAGGACTCGGAACTGAAGATTCAGATAGACGCTTT
GGCCTCTCGTGTCAAGTTTCCGCTCACGAAAGTCTTCGTGGTGGACGGTT
CTCGACGTAGCGCCCATAGCAATGCCTACTTCTACGGCTTCTTCAAGAAC
AAACGGATCGTCCTCTTCGACACCTTGATCGCTCAG

Synonyms

Publications