|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100001g209.8154.mrna |
| Orig protein id | gnl|cribi|Naga_100001g209.8154 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:413264..414949 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3916 ID=rna3916|Name=rna3916|organism=Nannochloropsis gaditana|type=mRNA|length=4075bp
TGCCACATCTCCTCGCTTACCTACGCTTCCTTCCTTGGCGTTACTACTTC
CTTTCAACATTTCGACGTGTCCTCTTCGTACACGTTCGCACCAAAATGTG
CCTCTGTACTTGTCTTGTCTGCATGGCAGGAACAAGGATGCGACCATGTC
CATGTGGCGTTCCGTTTTTTTAATAAGCTGCGCAAGGGTGGGTGCGCCGA
GCGCTTTGCCACGCACAAGCATGTATCAACAAACAGCGCCCCTTTGATTT
CATACACCAAAGTCCGTATTCTCTCAGTTTAATACTAAATTGTGCCATTG
TTTCCTCTCTCTCTGCACACGAACATCCCAGGGGTCTACTATTTTATTCT
GGTCATTCCAACGCGTACCTTCCCGACCGGCTTGCCTTACTTATCAAGAG
TTCTCGATCCGGCTCTCAACTCGGTTGCGTCAAAGTCCTTTATTTCTATT
CATTGAAACAAATGAAGGGACGTGGTGTTGAGTACCGAACTGCCCCAACC
AGCCCCTCTAAAGCGGACATGCAGGATGCTTTGCGGGGGCTAAAAGGCCT
GACCAGATTTGTAGACACACCAAGCAAGTCAGCAGCGTCCTTTCAGTGCC
CAAAGGAACTCTACGCCGTGCGCATCCTCGTTGTCCTCCATCTGGTCCTC
CACTTCTGCTACCAGACATTCGGCCCCGACGTTTTTCAGAACGTCTTCGT
AGTTCGCCTCGCTGAGTGGGGTGCAATCCAATATAGCACATTATTTTGTC
TGGAGGGAATGATCTTGGCTATCCGTTACGGTCGAGTCCCGGGGGGGGAG
AAGGAAGAGGAGGACGAGAAGGACGCTCAAGCTCCGGAGGCCATTGCTTT
CTTCAAGAGACATGCCTTAGAGATCTATCCCCTCTACCTCATCGGCGTGG
CAGCAACCGCCTCTTTCTCCCTCCTCACGACCGGGACAGGTTCCCTACGG
CGTTTCCTCCTGACCGCCTCCGGGTTGGACGCCTGGACGCTCGGCAGCCC
CGACCTCCTCTCCCGGGACCCGACCTGGCTGGTGGCCACGCTCCTCTTCT
ACCTCAGCTTCTTCCCCGCCCTCCTCAAGCTGGCCCTGCCCGCCTCCCGT
GGCACCCTCTTGGGCGTGATGGCCACGGCGTGGGCGAGCACGGCAGTGGT
CCCTCTCACCTTCCTTGGCTTCGACCTGGAGCTCGGCGCCGCGCCCCACC
TGTTCACGCTCGGCACCACCTTCCCGCTCATGCACGCGGCTTCCTTCGTC
TTCGGGGTCACCTTGGGTCTCTACTTCCTGAAGCTGGACAGAGAGGCAGT
GGCAGGAGTTTCGCAGTCCTTCCTTGGTACGGCGGCGGCGGCCGGCCTCC
TCTTCTTCTTCCTCTCCACGGACATGTTCGAGGGGCGGATGCTCCTTTGG
TGCTACGACGGGCTTTTCTTGGGCTTCATGGGTGTGATCCTGCTCCTCGC
AGCCATTGGCAAAGACACCTTTTTGGGAATCGCGCTCCGGGTCAAGTTCC
TCTCTGAGGTCTTGGGGCCCGCAGCCCTGACAGTCTACCTCCTGCAGGGG
TTCTTCCTGGGCGTGGCTGGCTCCGTGGTGGAGGCAGAGACGAGCACCCT
CGTCTGGCTCGCATTCTGGGCCGCGCTTTTGACTGCCGGCTTTTTTCTGC
ACAGGAGCTACCAGGCTGTTTACCTGCAGCAGATGCTACCTCTGATCTTA
GCGGGCGAGGAGAGCGCGGCGACCGCAGGCAGGGGCCAGCCAACCCCCCC
CCACCGCCCTTCCTCCCCGGCCTCCACTGCCTCCTCTTCCTCCACCTCCT
CCCCCATCGCGGGCGCTTCAGCCGTCTTCCAGGACGACTTATCCTCCATC
GAGGACCACGGCGCTGAGTACCCCATTCAAGGTTGGTTTTGGCACAAGAG
TTTTCTGATGGCGGCCTTTCGCCTCGCCTGCTACTACGGGTCCATGGCCC
TGACCATCTTTTTCTACATGACGCTGGCACTGCGCTTCGACTGGAAAGGC
TTCGCCTCCGTCTATGATATGCCCGTCGCCAACGCTTTTGTGAACTTCTT
GAAATACTGCGCCCTGCTTTCCCTGCCCTCCCTGACATTTTCTATGGTCG
GACACATTCTCTTCCCCCCCGTCCTCCGCAAGCGGACGCCCTCCCTCGAA
GCCCTGAAGAAGGCTTTCAAGCACAAAGTCTTCTTCAGGATCGTCACGAG
AGGGAAGCACCCCAACCTGGTGCGCTCCCACGTCCTGCACGCCAGCAACG
TCCTCCGGGCAGCCCTGCCCCACTCCCAGTTCTGCCTCGAGGTTGCCACG
GACGCGCCCCTCGACCTCGACACCTTCTGTCCGGGTATGGCCACCGAGCT
TCTGCTACCCAAGAACTACGCCCCCGTGGGCGGCGCCAAGTTTAAAGCGC
GGGCTTTGCAGTACGCCATCGAAGCCTCCGCGGCGGAGCCCGGGGACTGG
ATCGTGCATCTGGATGAAGAGACGCGTTTCGATGCTGAGACGGTCCGGGG
GGTCCTGGCGCACTGTGTCGCGGAAGATGAGGCGATCACCCGCGGGGCCA
AGATCTACGGCAATATCGGACAAGGTGTGATCCTGTACGGCACGCAAGAG
CCCGACAACTGGCTGACCACACTGGCGGACTCCGTTCGGGTCGGCGACGA
TTTCGGGAAGTTCCGCATCCAGTACGAGCTGCACGAGCCCCTGATCGGCA
TGCATGGCTCCTTCGTGGTCTCTCAGAACGCGGTGGAGAAACTGGTCACC
TTCGACCACGGGATGGAGGGGAGCATCACGGAGGACGCCTACTTCGCCCT
GGTGGCGCAGGTGAAAGGGATTAAGTTCTCCTGGATCGACTCCTTCATGT
ACGAGCAATCCCCCTTCTCCTGCATCGACTTTATGCACCAACGCTGCCGG
TGGTTCGCGGGCCTATGGCTCATCGTCCTCTCCCGACGCATCCCCTTCTT
GAACCGCGCCGTGCTCCTCTTCTTCATGGCCACCTGGGCCGCCACGCCCT
TGATCTGGCTCGCCATGACCCTGTGCATGTGCGTGGCTTCCTCCGTCCCT
TACTGGTTCCGCGCCTGCATCGGACTCATCAGTGGAATGAGCACTTGGGG
CTACATACTCGGCTTTGCCTTCACCTTCAAGGCCCGCGACGGCTCTGCGC
GCCTTCTTCTCCTGTTCGGACTACAGCTCCTACTCCAACCTCTGTTTGCA
GCCATGGAGCTGAGCGGAGTGGTGCTTGGCATCGTGGCGCCGCCCACACA
AGGTTTTCATATTGTACAAAAGGAAGGGACAAAGGTCCAAAAGTCGACGG
GGGCCATGTCGAGGAACAGCTCCCTGGCCTCCATTGGCAAATTGAACTCG
GTCGATCACGTGTAGTCGAAAATTAGGCAGTAGCGAGGGAGAGAGCTCGA
CTTGATGACTCAATACAGGGTTACAGACAGGGGCGGGGCTCCAAAGGTGT
GTCGCGCCGTGGAAGCTAGAGAGAATCGTCGTGTATATGGTGTAGGAATC
CGCTCTGGTCGATCTGGCTCTGATCCAGTGGATCTTTTGAGACGAGAGGA
CGGGAGAGGGGAGGGCGCGAGGGGGGTTGGCGCCTGGGTGTGTATGCGGG
AGCCGATGGGCTTGTTCATTAGAAATGATTGATTGCAAGCGGGGCAGTCG
AGACTATGATTCGCTATGGGAAAAGTTGCAAGACGGGAATAAAGGAAATC
GCCGGGTGTCTTATGAGGATATGAGGTGGAGGCAAATCTGTGCGTGCGTG
TGTGTGTGTGGTCCGTGACTTTGCCGGCGCGAGCGCATCCTGAGGGAGGG
ATCTCTTCGAGAGAGCAGACTTACGCTAGCGATACGGGAAGGCGAGATGC
ATCACACGAACGCTGTTGCGCACAGTACTTAAGAAGAACATGAAAATCTA
CTGAAAGCAGGCGTTCATGTCTCACACCATGCAAATTTACCGAGAGAAGG
ACCGGACTAGGGAAAGGGGAAGTGAATTTGACCTGCGGGCTTCCTTGATG
TTGTGTTAGAAAGCTGCGTACCTCAATGTATCTACATAGTTATATTCAAA
GAAGCAAGAACTCGTGACCAAGAAT back to topprotein sequence of rna3916 >rna3916-protein ID=rna3916-protein|Name=rna3916|organism=Nannochloropsis gaditana|type=polypeptide|length=390bp
MAQKVEQSQLRECLPGDAARKLLKQAIDTAQAAREEMRALQEQAVDRGGF
SRSIPHGYLVGTDNTKLDNFYDSNYGVEFVSKALPLPGETGSYKHDVART
HRDNDGRIGGQNRNKLANYGAGDVPNANKNVGMQQQLKNEKVHGKGEGEF
HIDDTNSYRSQRASSPPLSASSHRNLISDAHQMFPCIAASHAPCSSLDEQ
RPRNAKLHALKARVEKLLLREEKNRKGEIKVRREVMSGIPDDLDRGRSPW
SSPKSSQHIDSPTSDTNMPNVPDVDRRLEDGPGAPVFSASSTLLERAIAE
KRREKRASFSLSRTSESQLPRSLLPNSEAVEDAPRNLGSCQSSTASATWH
DAWVWPRLTKEEMHAARQKPPLPEWGRTGRGEGGGLDSLT back to topmRNA from alignment at CM002462.1:413264..414949- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3916 ID=rna3916|Name=rna3916|organism=Nannochloropsis gaditana|type=mRNA|length=1686bp|location=Sequence derived from alignment at CM002462.1:413264..414949- (Nannochloropsis gaditana)
GTGGCTCGCTCTTTATGGGTAAAATATGGCACAAAAGGTGGAGCAGTCCC
AACTTCGAGAGTGTCTTCCCGGAGATGCCGCCCGGAAGCTGCTGAAGCAA
GCAATTGATACTGCTCAGGCAGCACGGGAGGAGATGAGGGCTCTGCAGGA
GCAAGCCGTCGATAGAGGGGGATTCAGCAGGTCTATTCCGCATGGATACC
TTGTCGGAACGGACAACACAAAGCTCGACAACTTTTATGACTCAAATTAC
GGCGTTGAATTTGTTTCGAAGGCCCTGCCTTTGCCAGGCGAGACGGGCTC
TTATAAACACGATGTAGCACGTACGCATCGTGACAATGACGGGCGAATAG
GCGGTCAAAATAGGAACAAACTCGCAAACTATGGGGCTGGCGATGTTCCA
AACGCAAACAAAAATGTAGGAATGCAGCAGCAGCTTAAGAATGAAAAAGT
GCATGGTAAAGGGGAGGGTGAATTCCACATTGACGACACGAACTCTTACC
GCAGCCAGCGAGCTTCCTCGCCGCCGCTATCTGCGTCCTCGCATAGAAAC
CTTATCAGTGATGCCCATCAGATGTTCCCTTGCATAGCCGCTTCCCATGC
GCCTTGCTCCTCACTAGATGAGCAGCGGCCACGGAATGCCAAGTTGCACG
CACTGAAAGCCCGCGTCGAGAAATTGCTGCTCCGCGAGGAAAAGAACAGG
AAGGGGGAAATAAAGGTGAGAAGAGAAGTAATGTCAGGGATTCCGGATGA
CTTGGACCGAGGCAGAAGCCCGTGGTCGTCTCCGAAGAGTTCGCAGCACA
TCGACTCGCCCACCTCGGACACCAACATGCCAAATGTCCCAGACGTGGAC
CGCCGCTTGGAAGATGGACCGGGCGCTCCAGTATTCAGCGCCTCGTCCAC
CCTTTTGGAACGAGCCATCGCGGAAAAACGGCGGGAAAAGCGTGCTTCTT
TCTCCCTGTCCAGGACGAGCGAGTCGCAGCTCCCACGGTCGCTGCTTCCA
AATTCGGAGGCTGTTGAGGATGCCCCCCGCAATCTTGGTTCTTGCCAGAG
CAGTACGGCGAGCGCTACATGGCACGACGCATGGGTATGGCCGCGCCTGA
CCAAGGAGGAAATGCATGCGGCCCGGCAAAAGCCTCCTCTGCCCGAATGG
GGGAGGACGGGAAGAGGGGAAGGGGGAGGCCTCGATTCACTGACTTAGGA
TGCGGACGAACGTCCAGGGCCACATTCGGATGGGAGGTCTTTGAAACTGT
TTCCCTTGTGTATAGTTTCCAGCGGAGGTGGTTGTAAAGTGGCAAACTGC
CGTAGGATTTGACGGGTACCTCGTGGTACGAGAGAGGAATCGAGCCCGGC
CGGGCGAGCATTCTTGGTCACGAGTTCTTGCTTCTTTGAATATAACTATG
TAGATACATTGAGGTACGCAGCTTTCTAACACAACATCAAGGAAGCCCGC
AGGTCAAATTCACTTCCCCTTTCCCTAGTCCGGTCCTTCTCTCGGTAAAT
TTGCATGGTGTGAGACATGAACGCCTGCTTTCAGTAGATTTTCATGTTCT
TCTTAAGTACTGTGCGCAACAGCGTTCGTGTGATGCATCTCGCCTTCCCG
TATCGCTAGCGTAAGTCTGCTCTCTCGAAGAGATCCCTCCCTCAGGATGC
GCTCGCGCCGGCAAAGTCACGGACCACACACACACA back to topCoding sequence (CDS) from alignment at CM002462.1:413264..414949- >rna3916 ID=rna3916|Name=rna3916|organism=Nannochloropsis gaditana|type=CDS|length=1173bp|location=Sequence derived from alignment at CM002462.1:413264..414949- (Nannochloropsis gaditana)
ATGGCACAAAAGGTGGAGCAGTCCCAACTTCGAGAGTGTCTTCCCGGAGA
TGCCGCCCGGAAGCTGCTGAAGCAAGCAATTGATACTGCTCAGGCAGCAC
GGGAGGAGATGAGGGCTCTGCAGGAGCAAGCCGTCGATAGAGGGGGATTC
AGCAGGTCTATTCCGCATGGATACCTTGTCGGAACGGACAACACAAAGCT
CGACAACTTTTATGACTCAAATTACGGCGTTGAATTTGTTTCGAAGGCCC
TGCCTTTGCCAGGCGAGACGGGCTCTTATAAACACGATGTAGCACGTACG
CATCGTGACAATGACGGGCGAATAGGCGGTCAAAATAGGAACAAACTCGC
AAACTATGGGGCTGGCGATGTTCCAAACGCAAACAAAAATGTAGGAATGC
AGCAGCAGCTTAAGAATGAAAAAGTGCATGGTAAAGGGGAGGGTGAATTC
CACATTGACGACACGAACTCTTACCGCAGCCAGCGAGCTTCCTCGCCGCC
GCTATCTGCGTCCTCGCATAGAAACCTTATCAGTGATGCCCATCAGATGT
TCCCTTGCATAGCCGCTTCCCATGCGCCTTGCTCCTCACTAGATGAGCAG
CGGCCACGGAATGCCAAGTTGCACGCACTGAAAGCCCGCGTCGAGAAATT
GCTGCTCCGCGAGGAAAAGAACAGGAAGGGGGAAATAAAGGTGAGAAGAG
AAGTAATGTCAGGGATTCCGGATGACTTGGACCGAGGCAGAAGCCCGTGG
TCGTCTCCGAAGAGTTCGCAGCACATCGACTCGCCCACCTCGGACACCAA
CATGCCAAATGTCCCAGACGTGGACCGCCGCTTGGAAGATGGACCGGGCG
CTCCAGTATTCAGCGCCTCGTCCACCCTTTTGGAACGAGCCATCGCGGAA
AAACGGCGGGAAAAGCGTGCTTCTTTCTCCCTGTCCAGGACGAGCGAGTC
GCAGCTCCCACGGTCGCTGCTTCCAAATTCGGAGGCTGTTGAGGATGCCC
CCCGCAATCTTGGTTCTTGCCAGAGCAGTACGGCGAGCGCTACATGGCAC
GACGCATGGGTATGGCCGCGCCTGACCAAGGAGGAAATGCATGCGGCCCG
GCAAAAGCCTCCTCTGCCCGAATGGGGGAGGACGGGAAGAGGGGAAGGGG
GAGGCCTCGATTCACTGACTTAG back to top
|