rna3914, rna3914 (mRNA) Nannochloropsis gaditana

Overview
Namerna3914
Unique Namerna3914
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1400
Alignment locationCM002462.1:406716..408089 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g212.8168.mrna
Orig protein idgnl|cribi|Naga_100001g212.8168
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:406716..408089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g212gene3766Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3914rna3914-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26657.1cds3905Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3914 ID=rna3914|Name=rna3914|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp
AGGCTCAAAGCTACTTGCTCACAATTGACCTTTACCCATGGTAGCGTAAA
TCGCTGACCCTCTCTCATTTGCTCCTTCACACATTTGCACTAATAGTACT
GACAGCCGTTGCGGAACAGGAAGATCAGAAGCAACCTTCCTCCGTCGACC
GTTTACGAATAAGACAAGTTACGAGTTATACGAAGCACAACCATGTCCAA
GCGTGATTATGACTTTCTTTTCAAGCTCGTGCTGATCGGGGACACGGGAG
TCGGCAAGTCTTGCCTGCTTCTGCGCTTCGCGGATGACGCCTTCACGGAC
TCGTACATTTCCACAATCGGCGTCGACTTTCGATTTCGCACAGTGAAAAT
TGACAAGAAGACGTTTAAGCTGCAAATCTGGGACACGGCAGGGCAGGAAC
GCTTCCGCACAATCACGTCCGCCTATTACAGAGGGGCGGATGGTATCATC
ATGGTATACGACGTTACGAACGAGGAATCATTCGAGCATATTCAAGACTG
GCTGAATGAGGTGAATCGCTATGCTTCAGAGGGCACATGCAAGCTCCTTG
TGGGGAACAAGAGCGACCGACCAGACAAGGTCGTCTCCACGGAGCGGGCC
AAGAAATTCGCGGACGAGCTGGGCATCCCTTTCTTGGAGACGTCGGCCAA
GAACGCCTCAAACGTCGAGGAGGCCTTTCTGACCATGGCACAAGAGCTCA
TTCGTCTCCGTGAGGCCAAGGGTGCAGCCGCTCCTGGTCCTGGGGGGGCG
GCTTCAGGAAAGAGTGGCGATACGGTGTCACTGTCGAGTAAAAACGACAA
GGAAGGAGTAATGAAAAATTGTTGTTGAATTTCTTCCCTGAAGCTAAATG
GAATAGAGTTAGGATGGGAGAATATAAGGGGAATCTGGTATTGAAGACAT
GTAAAAGAAACAAGAGTCGAGTAAGTAAAATGTGCTGAGACATGATTCTG
AGTATTGTAAGGGGTGGTGGGCTCTGGGAACAGACAACATGCTTGTAGAA
GGAGCACATGGAGGGGTTCGTATAGAGAAGGAAAGGTGGGCCGTAAGATT
AGTCGGTAGTAATGACAAAATGGGAAGACAAAATATTTGAAGTCGACGCT
ATCTGTATTTATGTGTGCATGCTTTGGAACAGTGCGCGAGATGAGTTAGT
GAACTCGATCAATCTATTTGAGAAAGAAGAAAATATCACCTTGCATGGGT
ATGTTTGTCTTACAAACCAGCAGCAAACGCAGAAGGCGGACTAAAGGAAC
GCACACGTGAGTACAAAGGAAGGATTAAGAACATAACATGTACTCGTGAC
GAGAATTGTAGGATTAATGGTCAAAATGACATGGTTGCCTATTACTCTGT
ATGCTTTCACATGACACACAGAAGTAGATGAAAACCTTTTACACAAAATC
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protein sequence of rna3914

>rna3914-protein ID=rna3914-protein|Name=rna3914|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MHHHIQVCLNNATKIDISRAIDVSIAYLRTRPTIEFFVPMQIGVDAPAIG
AGIVCVGLVHDHHLGFFVIESLAQQSLAELIVGEDEHHPRHFAADFASRN
SDHFLS
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mRNA from alignment at CM002462.1:406716..408089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3914 ID=rna3914|Name=rna3914|organism=Nannochloropsis gaditana|type=mRNA|length=1374bp|location=Sequence derived from alignment at CM002462.1:406716..408089+ (Nannochloropsis gaditana)
CAAGCATCTTGATATTTTAAATTCAACCGAAAACGGGCGGCCCATGTAAA
TCAACTACGCCTACTGTTCAAGTGTGCAAATTGCCACTCTTTGCAGTGTG
TCATCTATCTTTCACGTCTGCCACAGTCTTGCCCTACAACTCCATAATCA
GACTCGGAAAGCCCCTAAGGAATAAATCGTAGGAGGGGTAGGCCCCGAAG
GCAGCACTGGATGCACCATCACATCCAGGTCTGCCTCAACAACGCTACGA
AGATAGATATTTCGCGCGCCATTGACGTCTCGATCGCCTATCTACGAACA
AGACCGACAATTGAATTTTTCGTTCCCATGCAAATTGGCGTGGATGCTCC
CGCGATAGGTGCAGGTATTGTTTGTGTAGGCCTCGTTCACGATCATCACC
TTGGTTTCTTTGTAATTGAGAGCCTTGCCCAGCAATCGCTGGCGGAACTT
ATAGTGGGAGAAGATGAGCATCATCCGCGCCATTTTGCTGCGGATTTTGC
AAGTCGCAATTCTGACCATTTCTTGTCGTAAACTTGGGCATTAAGATTAC
TTTCTAGCTCTCGCAAAGGTACTCGGCGGCCTTGACATGGGAGGTCAGTA
ATGCAAAGTGCAGGTCGACCTTTCTCAGTTGCCAACGCCCTAAATTTGTC
CTTGCCTGGAAATCATGTACATTGTGAGAGTCTCTTCATAGAGAGGTTTT
CAAGGCTCGGACGGCAGGCGCGCGCGTCGGTCTGGGTCGCTCCTCACGCC
ATGCTGGTGATCTGTGCCACGGTCTCCCCCGACTAGTagccccttccacc
tcaaCACATGAACAGTGACCCACTCCGAGACACTGTCACTTGAAGTTGTA
CCGTTTATCAATCATTCGCATCCACGAATGCTAAATACACGGCTTCAATT
ATCTTAAATTACGGCAACTTTGTCAGTCTCCTATGAAGCGATGGACAAAA
TTCTCAAGCGCCTTTTGCCGTCTTAGCAAATGCTTTTTCGATTCATAATT
TTCGCTTAGTCTCGACAAAAGCTAAAGAATGGCCAAAAGAGCAAATGTGG
TGGCATGGGAACTATTATCGACCAATTGCCACAATCATGTACTACCGTGA
ATTCGAAGGGTCAGGCCTCGTTGAAAATCTCGTGTAGATACAGCCTTGCA
TAAAAAGAAACGCAACACTTCCCATCCTGTCGACCCAAATATAGCTCCAG
AAGTAAAGATATTTGTCCTGAACACCAAATGATGCCGTCGTCTTCGGGTG
TTCATTACAGTAAAATGACCAAGACTTTCTGCTCAGGCTCCTTGTAATGA
TGCACGTAAGCACAGAGGACAAACAAATTCAAGTTACAAGCATGTCTGGC
TAGGAAAAGCCTCTTGTGAAAGGA
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Coding sequence (CDS) from alignment at CM002462.1:406716..408089+

>rna3914 ID=rna3914|Name=rna3914|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at CM002462.1:406716..408089+ (Nannochloropsis gaditana)
ATGCACCATCACATCCAGGTCTGCCTCAACAACGCTACGAAGATAGATAT
TTCGCGCGCCATTGACGTCTCGATCGCCTATCTACGAACAAGACCGACAA
TTGAATTTTTCGTTCCCATGCAAATTGGCGTGGATGCTCCCGCGATAGGT
GCAGGTATTGTTTGTGTAGGCCTCGTTCACGATCATCACCTTGGTTTCTT
TGTAATTGAGAGCCTTGCCCAGCAATCGCTGGCGGAACTTATAGTGGGAG
AAGATGAGCATCATCCGCGCCATTTTGCTGCGGATTTTGCAAGTCGCAAT
TCTGACCATTTCTTGTCGTAA
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Synonyms
Publications