rna3908, rna3908 (mRNA) Nannochloropsis gaditana

Overview
Namerna3908
Unique Namerna3908
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1511
Alignment locationCM002462.1:387556..388394 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g219.8092.mrna
Orig protein idgnl|cribi|Naga_100001g219.8092
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:387556..388394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g219gene3760Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3908rna3908-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26581.1cds3899Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3908 ID=rna3908|Name=rna3908|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp
ACTTCCTTCAACATTTTTCCCGATGTGGTGTTTCCCATTAGGACGCCAAA
AGGCAAAGCCAAAGCTTTACCGCTCTCCCCGTCACTCACTTCGCACTGCC
TGTTTGATGCACGTGCATACTTATGCATGATGACGGTGTATTTCTTCTGC
AAGCGGAGCATGGTCTCGGTGTGTGCGCCCTGGCGTGGACATGAGGGAGG
TCACTCGGCGACAACTTGTAGGTGACGAGGATCTGCCTGGCGCCCGTCCG
CGTTTAAAGCTATCCTAAAATCTGTATGTGCAACCCATCGGCAAGCCTCT
TCACGGCCGCCATCATCCTCACACATGCATTCACTAGCACGCCTGCACTA
ACGCGTTTAAACACAGGCTTGCGGACCAGGGAGGACGAGACTCGGGTGTT
GTCTGGCGCCCCTCTAGGAGCGTCTGCCCTGTCCTGCCGGCTTGAGAAGC
CAAGGTCTTCATATCTCCAAGTCGCCACGTTCGTTCAGACCCCCTTTGCC
ACTTCGTGAGCTTCGTGTTGCCATGCCGGGACCTAGACCGACGAAAGTAC
TGACTGTTCGTGAGCTGCAGATGGCTAAACGCATGTTGAAACCCAAGAAG
GCGGCTGCCTGCCAGCGGGAGCTCAATGCCTTGTTGACAGCCATGGAGCG
CAAGGAGAACGGGGAGGCGAATGTGAACATCAGGATGCTGCAAACTGCCT
TAGAGCACTGTTTGCACCAGGCGGTGAGTACCTCATATAATGGAGAAGAG
GGAGTTAATAGAGCAGCAAATGTCACTGTGTCCGCCGCCCTGCGCTTATG
TCTAATCATGAATTCAAGTTGCTCCTCGCGGTGGGTGGAATATTGCCTGT
ATGAAATCTTCCGGCCTGGTTCCACTGGGAGAGGGCTTCGACCTGTTTGG
TTCATGCATGCTCGAATATGGCAGAGGGAGGAGACGATTCTCTCCTGACA
GCCCTCTTGGTGTGAATAGTACCACGATCGCTTCCTGCGACACTAGCGAT
TGGACATTTAAAGGGTGGTTACGCTGGTTTTAATGGCTTCCAACGCTTAT
TTTCATATTTTTTTGGAGGTGTGTCTGTATGTGTGTACAGCAGATAGTTT
GTACGCTTGCACACAAAAATATCCGATAAATCACAAAATACATATGCTGT
TGCTCATAAATTTTCAATCTCTTCTTCCTGTTTTTCTGGGTTTCTCTGCC
CATTGATCATCTGTTTGACAGGAGCAGGAAAAGAAAATGGCAGGCCCACC
GCTCGGTCTAGGTGTTTTGGCCCGAGCAACGAAAAAGAAGCGGTAGACTT
TGTGCGACTCCATGATGGAACGCGATGCGCTCACAATCGAAAGATTTATA
AGGTGACAGCATGTCTGTGTAGCTGGTTATCTCTGGCACGCCCTTCCCTA
GGTCGGTGGATCTTACCAACAAAAAAGCTTCCCGCCCGTGTCCTGAGAGA
TTTATCTTAAGCTCTGTAAAAATAAGACGAAGCTTCCATTCCTCGACTGG
AACTCAATATG
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protein sequence of rna3908

>rna3908-protein ID=rna3908-protein|Name=rna3908|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MLRLQKKYTVIMHKYARASNRQCEVSDGESGKALALPFGVLMGNTTSGKM
LKEVVADARAVLKATGKNTFEQVKARRQDVQRQLDEVSKHKEDLLQRRAA
GVRAIVKEYAAKREIMLEHFASDKTQQPPAFGAGSAPLTDTDSSAKDSQK
KKMFRATESSSSTHRLLPSPEEVFRQAKDFDESRGSKISSTDPSKVGPH
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mRNA from alignment at CM002462.1:387556..388394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3908 ID=rna3908|Name=rna3908|organism=Nannochloropsis gaditana|type=mRNA|length=839bp|location=Sequence derived from alignment at CM002462.1:387556..388394+ (Nannochloropsis gaditana)
AAGAGGCTTGCCGATGGGTTGCACATACAGATTTTAGGATAGCTTTAAAC
GCGGACGGGCGCCAGGCAGATCCTCGTCACCTACAAGTTGTCGCCGAGTG
ACCTCCCTCATGTCCACGCCAGGGCGCACACACCGAGACCATGCTCCGCT
TGCAGAAGAAATACACCGTCATCATGCATAAGTATGCACGTGCATCAAAC
AGGCAGTGCGAAGTGAGTGACGGGGAGAGCGGTAAAGCTTTGGCTTTGCC
TTTTGGCGTCCTAATGGGAAACACCACATCGGGAAAAATGTTGAAGGAAG
TAGTGGCAGATGCGCGCGCGGTCCTGAAGGCAACTGGGAAAAATACTTTC
GAGCAAGTCAAAGCTCGACGTCAAGATGTGCAACGACAATTGGATGAGGT
CAGTAAGCACAAAGAGGATCTGTTGCAGCGTCGTGCGGCAGGTGTTCGAG
CCATAGTCAAGGAGTACGCGGCCAAACGAGAGATAATGTTGGAACACTTT
GCCTCAGACAAAACTCAGCAGCCACCCGCGTTTGGAGCAGGTTCAGCACC
CCTTACAGACACAGATTCGAGTGCCAAAGACAGtcagaagaaaaaaatgt
tcAGGGCTACGGAAAGCTCGTCAAGCACACACAGATTGCTGCCATCTCCA
GAAGAGGTGTTTCGACAAGCGAAAGACTTTGATGAGAGCAGGGGCTCCAA
GATTTCCTCCACTGATCCTTCAAAGGTTGGACCTCACTGATAAAGAAAAA
ATGCAGCAGATTGTAATGGCGTGATGATCTATACAGCGCAAATGTACAGA
AAAGAAAACCACGAAAGAAGCTAATGGCAATTTGCTTGC
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Coding sequence (CDS) from alignment at CM002462.1:387556..388394+

>rna3908 ID=rna3908|Name=rna3908|organism=Nannochloropsis gaditana|type=CDS|length=600bp|location=Sequence derived from alignment at CM002462.1:387556..388394+ (Nannochloropsis gaditana)
ATGCTCCGCTTGCAGAAGAAATACACCGTCATCATGCATAAGTATGCACG
TGCATCAAACAGGCAGTGCGAAGTGAGTGACGGGGAGAGCGGTAAAGCTT
TGGCTTTGCCTTTTGGCGTCCTAATGGGAAACACCACATCGGGAAAAATG
TTGAAGGAAGTAGTGGCAGATGCGCGCGCGGTCCTGAAGGCAACTGGGAA
AAATACTTTCGAGCAAGTCAAAGCTCGACGTCAAGATGTGCAACGACAAT
TGGATGAGGTCAGTAAGCACAAAGAGGATCTGTTGCAGCGTCGTGCGGCA
GGTGTTCGAGCCATAGTCAAGGAGTACGCGGCCAAACGAGAGATAATGTT
GGAACACTTTGCCTCAGACAAAACTCAGCAGCCACCCGCGTTTGGAGCAG
GTTCAGCACCCCTTACAGACACAGATTCGAGTGCCAAAGACAGtcagaag
aaaaaaatgttcAGGGCTACGGAAAGCTCGTCAAGCACACACAGATTGCT
GCCATCTCCAGAAGAGGTGTTTCGACAAGCGAAAGACTTTGATGAGAGCA
GGGGCTCCAAGATTTCCTCCACTGATCCTTCAAAGGTTGGACCTCACTGA
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Synonyms
Publications