rna3907, rna3907 (mRNA) Nannochloropsis gaditana

Overview
Namerna3907
Unique Namerna3907
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3069
Alignment locationCM002462.1:386346..387856 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g220.8252.mrna
Orig protein idgnl|cribi|Naga_100001g220.8252
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:386346..387856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g220gene3759Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26741.1cds3898Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3907rna3907-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3907 ID=rna3907|Name=rna3907|organism=Nannochloropsis gaditana|type=mRNA|length=3069bp
ATGGGAGGTGCGGCGTCAAAGAATGTCAGGACGGAGCACTTCTCGCTGGA
GGACCTGCTCACCGCGGACGACTCGGTCGACATGCGCAAAGCGACCATCA
TCATTTGGAAAAACCGGCATAGGCCGGAAGTCATCAGCGAGCTTGCGGAC
TTGCTCTCGGAGTACTCGGACCAGAAGACGGTCTTCGAGGGTATTGAGTT
CTACCTCCCTCAGCTCGCCCACATGATTATTCACCTCGAGGTCGATTGGC
CGACAGCGGCATTGGAGCAATTCGTGCTAATCGTTTGCCAACACTCGTTG
CATTTCGCCCTGCAGCTGCACTTTATCTTGGTGGGCGCCATGGAAGACTA
TCAGGTGGAAGGGTCGGACGGGCGCAGGACTGTGCATGGGAACCAGCGAT
ACTACCGCCGGTGCGCCAAGCTCCTGCAAAACGTCCACCGGTGTGTAGTC
TACGGCGCCCCCCGTGTCCGGCATCTGGAAGACCTGTACCGGTCGGGCAA
GCTGAGCAAGACGGAGCTGGAGGAGCTGGGGATCGCGGAGCGGCGGTTTC
AGGCGGCGCAAATTTTGGACCCGACCGAGATCACCGTGGGAGGAAAGGAG
CACAGTGTCATGGAGGGGCAGCTCGCCTACAAGCGGCATCTCCGGCGCTC
GTGCTGCCACTCCAAAGGCTGGAAGCTTCGCTGGTTCAAGATCCAGGACC
GGGTCCTCTACTGCTACAACAGCAAGGACTGCGGACGCCTGCACCGGGCC
GTTCCCTTGGAGGCGGCCGTCGTGGCCGTGGTGGACCACCCTCGGCACGA
GCACTACTTCGAGGTCTCCCCGGCCGCCACCGGGGGGGCAGCCTGTGTCT
ACATGCTCAAGGCGGAAACGAAGGAGGAGATGGAGCAATGGGTGAACCAG
CTGAAGGCCCAGTCTATGGCCCCCACCTTTCTGCAGAAAGGGGAGGAGCA
CATGCTCTACCCCGCAGAGTTCGGACGCTACCAATTCTTTAAGTCCCAGC
GCGACTTTATCAACCGACTGACGGACATCTCCGAGGAGATGCGTTTCCTG
GACCGAGGCATCCGCACTCGGGCCCTGAAGGAACGCCTCCCCGACGTGAA
GATCCCGCCCGCCGCTTACCTGCCCCTCTGCCAGTCCACCGAACCCTGGT
GTCGCATTCTGGGCCTCCTTCCCGAAGAGGCTCGGGCTTTCAGCACCAAG
GAGCGCTGCCCCTGCCTGGTTCTCTTCGAGGTGGAGAAGGACATGCAGGT
GGACGTGGCCAACTACTTGCACCAGCGGTACGGCGCCTTGGATGCGGAGG
GAGAGACGCCGCCCTCCTTGCGTCTGAGCGCCAGCCAGGGGGGTGGGGGG
CTGGAGATGGCGAACGCGAACGGTGGGAGCGATGAGACGCTCCCACGCAA
AGCCGCGGAGGACGCCCAGGCAGGCGCCAACACCGACAGCCGCGCGAAAG
CGCCCGCCCCCTCCACATTTGCGACCATCTTTTCCTCCATCTCGTACCAT
TCGTCCTCCCAGACCGGGGCTTCCTCCGCCACTGACACTGACACCCAGGA
CGCAGACGCCAATGGAAACCATGTCCCTACCTCGATCACTTCGGTGCAAT
CCATTTCCAGCCTCGGGCCGTCCTCCAAACAGCACGGGCAGGAAGCCCCC
CTCTGCCTGGGGCCCCTTGTGGACCGGGAGGACGAGGACGTCGGGGACGT
GCAGGCAGGGGAAGGCGCTCAAGCACAGCGTCGGTTGAGTCTGCCCAGCA
TCGGAATGCGCGCGTCGGCGAGCGGGCGCACGAATCCCTCCTTGTGGCGC
GTCAGTCGCCCCAACATAGCGCAGGAGCTGCGGAAGATCCCGGCCGAATT
TCGAGCTGCTCTTCGGAAACGGCGGATGCCCTCTATGCACAGTGCGCGTG
GGGAAGGAAGAGAGATGGGGGGAGGAGCTTTGGCAGGGCTGGGGGGAAGC
ACAAGGGGAGGCGGGGGGGGCGGCTTGATGAGCATGGGTTCCAAGATCGA
AGCTGCGCTGGGACTTTCCATGCGGTCGTCGATGGAAGGGGAGGGAGGAC
GACGAGAAAGTGACTTTGAGGACCCGAACAAGATCGTGCCCTGCTACGGG
GAGGTGTGGGTGCAGAAGAGGAACCGATTGCGGGAGAAGACTTCGTTCTC
GGAGGCCGTGGCGGCGGGCCGGTGGGACCTCCAGGCGGTGATCGTGAAGA
GCCACGACGACGTGCGCCAGGAGGTGTTCATCATGGAGCTGATTTCCTTC
TACGAGGAGGTGTTCAGGCTGGCGGGGCTCGCGATCTGGTTGCGGTCCTA
CAAGATTATCAGCACCGGCAACAGCACGGGCCTGATCGCCTTCTTGACGG
ACGCGATCTCCTTCGACGGGCTCAAGAAGAGCAGTGACTACCCCGGGACG
TTGCGGGGCCACTTTGAGAAGATTTACGGGGGAAGCGGCTCGCCGGAATT
CAAAGCCGCGCAGCAGAATTTTGCCCAGTCACTGGCGGGGTACTCCTTGC
TCTCCTACCTGCTCTTCTTTAAGGACCGCCACAACGGGAACATCATGATC
GACAAGAAGGGCCACGTAATCCACATTGACTTCGGCTTCGTCCTAGGGGT
CAGGCCCGGGGGGAGATTTTCTTTTGAACGCGCACCCTTCAAGCTGACCG
CAGAGATGCTGGAGATTCTCGACGGACCCGATTCCGCCTTATTCAGCTAC
TACAAGGAGCTGATGGTCCAAGGCTTCAAGACGGCACACGCCCACGCCGA
GACCGTCATCTGTCTGATGGAAATCATGTCCTTCCAGTCCAAGTTCCCGT
GCTTCGTGAAAAATAGTGGACGGGCTCGTTGCTCGCTCCTACGATGCCTG
TGGGACGCGGTGGTACGACAAGTTTCAATTGTGGACGAATGGGATCATGC
CCTAGGCCAGCCTCGGCGTTCACGGAAGGGCGCTCAGGAGGGTGAGGGCG
CCAGAATAGCGTGGAAATCCATGCATATCGGACGCGCCGATGGAGGAATC
CACTGTTGCCGAGCAGGAGGGCTTGCCTTTTGTTTTTTGTGGAATTTCTC
GCGTATGGGCCAGGGATGA
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protein sequence of rna3907

>rna3907-protein ID=rna3907-protein|Name=rna3907|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MPGPRPTKVLTVRELQMAKRMLKPKKAAACQRELNALLTAMERKENGEAN
VNIRMLQTALEHCLHQAVSTSYNGEEGVNRAANVTVSAALRLCLIMNSSC
SSRWVEYCLYEIFRPGSTGRGLRPVWFMHARIWQREETILS
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mRNA from alignment at CM002462.1:386346..387856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3907 ID=rna3907|Name=rna3907|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp|location=Sequence derived from alignment at CM002462.1:386346..387856- (Nannochloropsis gaditana)
ACTTCCTTCAACATTTTTCCCGATGTGGTGTTTCCCATTAGGACGCCAAA AGGCAAAGCCAAAGCTTTACCGCTCTCCCCGTCACTCACTTCGCACTGCC TGTTTGATGCACGTGCATACTTATGCATGATGACGGTGTATTTCTTCTGC AAGCGGAGCATGGTCTCGGTGTGTGCGCCCTGGCGTGGACATGAGGGAGG TCACTCGGCGACAACTTGTAGGTGACGAGGATCTGCCTGGCGCCCGTCCG CGTTTAAAGCTATCCTAAAATCTGTATGTGCAACCCATCGGCAAGCCTCT TCACGGCCGCCATCATCCTCACACATGCATTCACTAGCACGCCTGCACTA ACGCGTTTAAACACAGGCTTGCGGACCAGGGAGGACGAGACTCGGGTGTT GTCTGGCGCCCCTCTAGGAGCGTCTGCCCTGTCCTGCCGGCTTGAGAAGC CAAGGTCTTCATATCTCCAAGTCGCCACGTTCGTTCAGACCCCCTTTGCC ACTTCGTGAGCTTCGTGTTGCCATGCCGGGACCTAGACCGACGAAAGTAC TGACTGTTCGTGAGCTGCAGATGGCTAAACGCATGTTGAAACCCAAGAAG GCGGCTGCCTGCCAGCGGGAGCTCAATGCCTTGTTGACAGCCATGGAGCG CAAGGAGAACGGGGAGGCGAATGTGAACATCAGGATGCTGCAAACTGCCT TAGAGCACTGTTTGCACCAGGCGGTGAGTACCTCATATAATGGAGAAGAG GGAGTTAATAGAGCAGCAAATGTCACTGTGTCCGCCGCCCTGCGCTTATG TCTAATCATGAATTCAAGTTGCTCCTCGCGGTGGGTGGAATATTGCCTGT ATGAAATCTTCCGGCCTGGTTCCACTGGGAGAGGGCTTCGACCTGTTTGG TTCATGCATGCTCGAATATGGCAGAGGGAGGAGACGATTCTCTCCTGACA GCCCTCTTGGTGTGAATAGTACCACGATCGCTTCCTGCGACACTAGCGAT TGGACATTTAAAGGGTGGTTACGCTGGTTTTAATGGCTTCCAACGCTTAT TTTCATATTTTTTTGGAGGTGTGTCTGTATGTGTGTACAGCAGATAGTTT GTACGCTTGCACACAAAAATATCCGATAAATCACAAAATACATATGCTGT TGCTCATAAATTTTCAATCTCTTCTTCCTGTTTTTCTGGGTTTCTCTGCC CATTGATCATCTGTTTGACAGGAGCAGGAAAAGAAAATGGCAGGCCCACC GCTCGGTCTAGGTGTTTTGGCCCGAGCAACGAAAAAGAAGCGGTAGACTT TGTGCGACTCCATGATGGAACGCGATGCGCTCACAATCGAAAGATTTATA AGGTGACAGCATGTCTGTGTAGCTGGTTATCTCTGGCACGCCCTTCCCTA GGTCGGTGGATCTTACCAACAAAAAAGCTTCCCGCCCGTGTCCTGAGAGA TTTATCTTAAGCTCTGTAAAAATAAGACGAAGCTTCCATTCCTCGACTGG AACTCAATATG
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Coding sequence (CDS) from alignment at CM002462.1:386346..387856-

>rna3907 ID=rna3907|Name=rna3907|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002462.1:386346..387856- (Nannochloropsis gaditana)
ATGCCGGGACCTAGACCGACGAAAGTACTGACTGTTCGTGAGCTGCAGAT
GGCTAAACGCATGTTGAAACCCAAGAAGGCGGCTGCCTGCCAGCGGGAGC
TCAATGCCTTGTTGACAGCCATGGAGCGCAAGGAGAACGGGGAGGCGAAT
GTGAACATCAGGATGCTGCAAACTGCCTTAGAGCACTGTTTGCACCAGGC
GGTGAGTACCTCATATAATGGAGAAGAGGGAGTTAATAGAGCAGCAAATG
TCACTGTGTCCGCCGCCCTGCGCTTATGTCTAATCATGAATTCAAGTTGC
TCCTCGCGGTGGGTGGAATATTGCCTGTATGAAATCTTCCGGCCTGGTTC
CACTGGGAGAGGGCTTCGACCTGTTTGGTTCATGCATGCTCGAATATGGC
AGAGGGAGGAGACGATTCTCTCCTGA
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Synonyms
Publications