rna3905, rna3905 (mRNA) Nannochloropsis gaditana

Overview
Namerna3905
Unique Namerna3905
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2410
Alignment locationCM002462.1:381769..382044 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g223.8144.mrna
Orig protein idgnl|cribi|Naga_100001g223.8144
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:381769..382044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g223gene3757Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26633.1cds3896Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3905rna3905-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3905 ID=rna3905|Name=rna3905|organism=Nannochloropsis gaditana|type=mRNA|length=2410bp
CAACAAGGGTTAAAAATCGAGGATGCACCATGTTGAAAGCTTCAAAAGGG
ATTTATCGTCATAATCAGGCCATCCTTACCGAGTGTTCGAGAAAGCGCAC
CATCCCGGGGCATGGCGGTGTGTCATTTCTAATGATATGTGTCCTACGGC
AACCTGCCTCGCTTTTTCCTTCCCGGCCCGGGACACTCCTTCTTAAAGGC
CCTTTTCGGCCAAGTGCAGCCATGTGGTCTGTGCTTCCGCGTATGCAGGG
TGTGTGACCTGCAGGCTTCTTCAAATGTCCAGTTGTTTGTTTGAGCGTGA
CGCAAAAGTATCTATTGCCCTCACGTGTCATGAGCACAAATCGGAAGGAG
GTGGGTTGGGTGACAGCCTAGAGCTCAAGGACAGGAAAACACGCCCTTGC
AACCGGTTAAAATGATAAGAAATTTCTATCAGTTTGTCTGAATTCATACG
ACTGCTCAACATGGAAACGGGGGAAACATTGACTTGATAAACGAGGAATG
CAACGTTTAAAAAGGCATTCCTGCCCTGCACCCGTGTTTGAAGTTATTTA
TTCAATTGAAAAATTAACCTTGACGCGCCATATATGCCGCAATTTGCGAG
ACAGTATGTCATCTATAGCACCCCTGTCTGCCAAAGGGGCGGCTTCGATG
CTTCTGTTCCTAGGTTTTGTGATGGGAAGCGCTACAGTCATTGCTGCCGT
CGCGATTCAAGATCTCCTTGATTTGGACCCGATACTCCGAGGCTGGTTGA
AAAAGAGGCGAAACTCCAAGGGAGATGGCAGCAATGGCAGCCCTTTGAAA
AGGCCGGTCCCGTCGTTTTTGGAAGCCATGTATTTGTACGAAAGAAAGGT
GGGATGGGGGGAAGTTATCCCCTCTAGTCCACAGGAGGACGGTTTCTGCA
TGCCGGCTGCGTGGGAGGCTCACGCGGGCTGCTGGCTCCTCTTCCCCTGT
CGTCGCGACAGGCGGGCGCACGAGTTGGAGGGCGTTCAAACGGTGTACGC
ACACATTGCAAACGCCATCCAAGAACACGGGAGCGAGCAAGTGACGGTGG
GAGTGCGGGCTGAGGACTGGGAGGAGGCCAGGGCGTTGCTGCACCCCGGG
GTGCGCGTGGTGGAGATGGAGTCGGACAGCGCCTGGGCGAGGGACTCGGG
ACCGACTTTCGTGGTGAGGGATGACGGGGAGGAGGAGATGCGGGAAGTGC
GGGGTGTGGACTGGGCGATGGGCACGGAAGGCCCGTGCGGGAGGGACCAA
CTCGTGGCGCGGAAGGTGCTGGAGGTGGAGAAGATCCGGAGGTATGCAGC
CCCCTTAGTCATGGGAGGGGGCTGTTTTCACGTGGACGGAGAGGGTACGT
GTCTGGTCACAGAGGAATCGCTCTTGTCGCCGACGCAGCGGCCAAGCCTG
GCCAAGGAGGCGGTGGAAGAGGTCTTGCGGAGGTACCTGGGGGTGGAGCG
AGTGATATGGCTGGAGAAAGGCGTGTACGGGGACGAGGACAGACAGGGAC
GCGTGGACAGCCTGGCTTGCTTCAAGGGCCCCGGGGAGGTGATCCTTCAC
TGGACCGACGACGAGATGGACCCGCAGTTCGACCGATCCTGGTCAGCCTT
TATCCGCCTGACGCAAGCCACCGACGCCAAAGGCCGAGCGCTCCGGATCC
ACAAGATGCCCATGCCTGGGCCCATCTTCGACGAGCAAGGGGGTGTGGAG
GGGTCGCTCCTGTCGGGGGCGGGCTGTACGCCTGCGGGAAGGGAGGAAGG
AAAGGAGGGAGGGAAGGAGAAAGGGAGGGAGGAAGGGAGGGAGGGCACGC
ACGAAGAGGGAAACGCGCGCATCGTTGGACGCAAGGTGGGCCGGCGCATG
CCGGCCTCGTACGTGAACTTCTACATAGCCAACGAGGCTATCGTCGTACC
GCAGTTCATGGATCCCAAGGACGAGGAGGCCATAGAGCTCCTCCAGTTCC
TGTACCCAGAGCGGCGCGTGATAGGCGTCTGCACGCGGGATCTTCTTCGG
GGGGGGGGCAACATCCACTGCGTCACGCAGCAGCAGCCGACCAACCAGTT
CGATGCGTTTTGAAGGCGGGAAGCAAGGGCGTGTGGGCCTGTAAATACTT
TGAGGGAGGGACTTGGGACAGGGTGGGGGGCCGGAGTGACTCACTAAGGT
CTGCTCCGGCTGGAAATGGCCCCGTTGCACATTAGGTGGGATCGAAAGCA
TTATTTTTGGAGAGCAGCACTGTTTGCCTGTGCCCGCAGCAAGGGGTAAA
AGACGTTTGAGACCATCCTTTCAAGGTGAAGGAGGCAGGGGTGTCTGCTT
TTCCATCTCCATCGAAACGATTTCTTTTGCCTTTTTGCGTTTTAGCCGTC
GGTTCATCCTGCAAAGCTTTGTCAATCCATCCATACTTCTCTTGTGTCTA
TAGTTAACAG
back to top

protein sequence of rna3905

>rna3905-protein ID=rna3905-protein|Name=rna3905|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MHRRRRGGDDGGVGWLWYHGWRERSMPRPVIGSKFTFFFGNEGSNTVNYR
HKRSMDGLTKLCRMNRRLKRKKAKEIVSMEMEKQTPLPPSP
back to top

mRNA from alignment at CM002462.1:381769..382044-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3905 ID=rna3905|Name=rna3905|organism=Nannochloropsis gaditana|type=mRNA|length=276bp|location=Sequence derived from alignment at CM002462.1:381769..382044- (Nannochloropsis gaditana)
ATGCATCGCAGGAGGCGGGGGGGAGATGACGGAGGGGTGGGATGGCTCTG
GTATCACGGATGGAGGGAAAGGTCGATGCCAAGACCGGTGATCGGATCAA
AATTCACGTTTTTCTTTGGAAACGAAGGCTCAAATACTGTTAACTATAGA
CACAAGAGAAGTATGGATGGATTGACAAAGCTTTGCAGGATGAACCGACG
GCTAAAACGCAAAAAGGCAAAAGAAATCGTTTCGATGGAGATGGAAAAGC
AGACACCCCTGCCTCCTTCACCTTGA
back to top

Coding sequence (CDS) from alignment at CM002462.1:381769..382044-

>rna3905 ID=rna3905|Name=rna3905|organism=Nannochloropsis gaditana|type=CDS|length=276bp|location=Sequence derived from alignment at CM002462.1:381769..382044- (Nannochloropsis gaditana)
ATGCATCGCAGGAGGCGGGGGGGAGATGACGGAGGGGTGGGATGGCTCTG
GTATCACGGATGGAGGGAAAGGTCGATGCCAAGACCGGTGATCGGATCAA
AATTCACGTTTTTCTTTGGAAACGAAGGCTCAAATACTGTTAACTATAGA
CACAAGAGAAGTATGGATGGATTGACAAAGCTTTGCAGGATGAACCGACG
GCTAAAACGCAAAAAGGCAAAAGAAATCGTTTCGATGGAGATGGAAAAGC
AGACACCCCTGCCTCCTTCACCTTGA
back to top
Synonyms
Publications