rna3903, rna3903 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3903
Unique Name	rna3903
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	838
Alignment location	CM002462.1:378307..379860 -

Link to JBrowse

Properties


Property Name	Value
Product	Hyaluronan/mRNA-binding protein
Orig transcript id	gnl\|cribi\|Naga_100001g225.8204.mrna
Orig protein id	gnl\|cribi\|Naga_100001g225.8204
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:378307..379860 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100001g225	gene3755	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26693.1	cds3894	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3903	rna3903-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:378307..379860-
coding sequence from alignment at CM002462.1:378307..379860-

mRNA sequence

>rna3903 ID=rna3903|Name=rna3903|organism=Nannochloropsis gaditana|type=mRNA|length=838bp
CCGCTCCCCGGTCGGCGCGGGAGCGTGGGCCTGGTCAACCTGGGCAACAC
CTGCTACCTTAACTCGGCCGTCCAGTGCCTGGCGCACACCCTGCCCCTCA
CGCGCTACTTCCTCGCCCACCGGCTCGCGGAGGACTTGAACCCGTCCTCC
CCACTGGGGTCGGGGGGCCGCGTGGCTCGGGCCTACGAGAGACTGGTGAA
GGAGATGTGGTTCGGGGAGGCGCGCGTCTGCAACCCACAGGCGCTCAAGG
CGGCCGTGACCCGATTTTCCCCCCCAAGTTTACTGGCCATGCCCAGCACG
ACGCCCACGAGCTCCTGGTCCTCCTCTTGGACAAGCTCCACGAGGACTTG
AACCGCGTCCGGCAGAAGCCGTACGTGGAGGCCCGGGACTTGGACCCCGC
CCGGTCCCAGGCGGCGCAGGCGGCGGAGGCCTGGGCCCAGGTGCGGGCGC
GGGACGAGAGCGTGGTGGTGGACTTGACCTGGGGGCTGCTGCGGAGCACC
CTCGTCTGCCCCGCCTGCGGGCACGTCTCTGTGGCTTTCGACCCCTTCCA
TTGCTTGACGCTGGAGATGCCCGCCTGGGAAGGGCGCCAGCGGGTGGAGG
TGTTGGTGTGGCCGCGGGTGGGGGAGGCAGAAGGGCGGGGGAGGGAGGGA
GGGGCAACGGACGCCGGCCTCCCCCGCCTGGTCGTGCTCGACTTGCCCCG
CCGGGCTCTGGTCCGAGACTTGAAGGAGGAGCTGGAGGCGATTTGCGGCG
TGCGTCATGAGGACCTCTATGTGGGTGTGGTGCGGGAGCGATCCCTGGAC
CGGTTTTTGAGCGACCTGGTGCCGGTGGCGCGGGTGGA

protein sequence of rna3903

>rna3903-protein ID=rna3903-protein|Name=rna3903|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MDQQGKEIHDPHDKKAHTRPDVARGRQFERRSGTGREETQKKGGAGKANW
GNELEVRARRGYVPLVCIRMRSIIAGLCMKSKAWLQECSSPRKVCGGWRL

mRNA from alignment at CM002462.1:378307..379860-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3903 ID=rna3903|Name=rna3903|organism=Nannochloropsis gaditana|type=mRNA|length=1554bp|location=Sequence derived from alignment at CM002462.1:378307..379860- (Nannochloropsis gaditana)
CACCCAACCCACCTCCTTCCGATTTGTGCTCATGACACGTGAGGGCAATA
GATACTTTTGCGTCACGCTCAAACAAACAACTGGACATTTGAAGAAGCCT
GCAGGTCACACACCCTGCATACGCGGAAGCACAGACCACATGGCTGCACT
TGGCCGAAAAGGGCCTTTAAGAAGGAGTGTCCCGGGCCGGGAAGGAAAAA
GCGAGGCAGGTTGCCGTAGGACACATATCATTAGAAATGACACACCGCCA
TGCCCCGGGATGGTGCGCTTTCTCGAACACTCGGTAAGGATGGCCTGATT
ATGACGATAAATCCCTTTTGAAGCTTTCAACATGGTGCATCCTCGATTTT
TAACCCTTGTTGCAAAGTCGGACACGACGACGCCGCCAAAGCCTCCTTGA
GGTGCTACACACGCCATGTCTCTTGAAGTAAACAGGCAGTGAGTTCACGT
ATGTCTCTCTGACTTGAGGGGCGACGTCATGCGTGTATAATGGCAGCATA
GATATTATGCGTTAGAATAGCACGGGTGCTATGCTTTGGATGGCCACAGG
GTGCTTTTAGACCATTTGGAGGGATGAAGTTCACTCACAACTTCTTCCTT
CCTGTCACCCAGCGACTTTTGTTTAGGTACTCGCCATGGACCAACAAGGC
AAAGAAATCCACGATCCCCACGACAAGAAGGCGCATACCCGCCCGGATGT
GGCTAGAGGGCGTCAATTTGAACGCCGCAGTGGAACTGGCCGAGAGGAAA
CGCAAAAGAAGGGTGGTGCCGGAAAAGCCAATTGGGGGAACGAGCTCGAG
GTAAGGGCAAGGAGAGGGTATGTCCCCCTCGTGTGCATTCGGATGCGCAG
TATAATAGCTGGGTTGTGCATGAAGAGCAAGGCTTGGTTGCAGGAATGTT
CTTCTCCCCGTAAAGTTTGCGGCGGGTGGCGTCTATGATTGCGCTCGCTA
TGTTTTGCATGTCTTATGACCCTGTTGATCTAGCTCGTGCGCCCGTCATT
GCCTCATTCAACATACACCCACTCCATGGCCCCTACCGGCATCAGGACGT
GGACGAGATCGTCCGAGAAGTGCATGAGGAGATGGCGGTTCAGAAGTAGG
GAGTTGGCGGATGCCTGAGGGCTCGGGGGGCCGTCGGCGAGCGATCAAGC
CGAGCGATAGACAGAGAGGGGCCGCAGCGAGAGAGTTGCATAGGACCAGA
AGGGATTATTGGCGCCGTTAGAGGCGTGGCAAGGCTAGCAGAGACGGTGT
GGGAGAGACCGGGGAGCGAGGGAGAGGTAGTAAGCGCAGGGAGCGATGTG
AACGAGGGGGGCTGAGGTCTTGCGCGACAGGACAAAGTAGTTGACTAGCT
TGACGTGGGAGGAGGGGAAATTAAAAATCATGAAAAAACCACCAGGAGGA
CAGCGTCGCTGGCTGGTGGTAGGACGCGTTCGAAACAGTCCATGCATGCA
CTCGCGACCTTACAGGAGAGGGCCACACCCCAGGGTGCATGACCTCCGAG
TTGATTTCCTTTGATTTGCCCCTGTCACCCCACGGACGGCCCGGGCGCCC
TCCC

Coding sequence (CDS) from alignment at CM002462.1:378307..379860-

>rna3903 ID=rna3903|Name=rna3903|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002462.1:378307..379860- (Nannochloropsis gaditana)
ATGGACCAACAAGGCAAAGAAATCCACGATCCCCACGACAAGAAGGCGCA
TACCCGCCCGGATGTGGCTAGAGGGCGTCAATTTGAACGCCGCAGTGGAA
CTGGCCGAGAGGAAACGCAAAAGAAGGGTGGTGCCGGAAAAGCCAATTGG
GGGAACGAGCTCGAGGTAAGGGCAAGGAGAGGGTATGTCCCCCTCGTGTG
CATTCGGATGCGCAGTATAATAGCTGGGTTGTGCATGAAGAGCAAGGCTT
GGTTGCAGGAATGTTCTTCTCCCCGTAAAGTTTGCGGCGGGTGGCGTCTA
TGA

Synonyms

Publications