rna3899, rna3899 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3899
Unique Name	rna3899
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2056
Alignment location	CM002462.1:369883..371757 +

Link to JBrowse

Properties


Property Name	Value
Product	Zinc finger, DHHC-type, palmitoyltransferase
Orig transcript id	gnl\|cribi\|Naga_100018g3.2812.mrna
Orig protein id	gnl\|cribi\|Naga_100018g3.2812
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:369883..371757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g3	gene3751	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3899	rna3899-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26832.1	cds3890	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:369883..371757+
coding sequence from alignment at CM002462.1:369883..371757+

mRNA sequence

>rna3899 ID=rna3899|Name=rna3899|organism=Nannochloropsis gaditana|type=mRNA|length=2056bp
ACACATTCCAATCGTAAACACAGGAACGCACAGCAGCTCCCCGAGGGACC
CCACGTCGCTTTCCTTCGATTGCTGTGGTGCAACACAGAGGCATTAAAGT
CATAGCAAGATCGAGTGTACGCCGAAATAAGATGGTCCGACCTCTCATTT
CTCCCATTGCATTTGCCACAAACGCATCGACTACCGTACCGCCTGTACGT
GATTCACAAACTGCGATACAAAGTCCGTCCAAGACCACGCCCCGTTCGCC
AGTACCTATTGTTCTCAGTCCCGCAGGCAATCCATGTGTCATTTGTTTTG
ATCTAGAACGTGACGGCGTAATATGCTCGCAGAATCACTTCGTATGCCGT
GGATGCCTTCAGGTAATAAAATCGAGGGGTCTCCGGAAACAGATGCAAAT
GCGAAGAGATATCGTATGAAATGGTATCGTTTTTTCTTCATGTCAAAACT
GCGTGCACACGTCAACGCTCAGCATAGAATAGGCAAAATTGAGCAACGCT
GATGTTAATTTTTTAATGTTTTTAGGGCTTTATCTGCAACTTGGAGCCTG
TCACCATTCGCCGGAGCGGAGGCTGTGTGACCTGCCCGGCCATAGACGCA
ATCACTAACCAAACTTGTTCTGCAGAACCTTGGAGTTATGATGATCTCGT
GAATCTTCTCGACCCAGGCACCCAACGAAAATATGTGCAGCGCCTCGAAG
GCTTGTTGACCACTGTCCTTTCGGAAGAGAGGGCTGTTTCTGGGGAAGCG
CCACTTTCTCCCTATCGTGGAAGTGTGGGCCGTAGACAGCGATCTCACTT
GCCAAAGAGTGAACCACCAGCAGCTCCTTCTCTGTGGGAGGAATCCAGAT
CTCAACCTTTCGATTTGAAAATGAGCACTTGTCGGCAACACATCGCGGAG
GAAATTCTGACCTTGAAGTGCCCGCGGAAAGGTTGCCGTCGGGCGTTCCT
AGATTTCGATGGTTGTTTTGCTTTGACGTGTCCGAGGTGTGGGTGTGGAT
TTTGTGCGGCTTGTATTGAGGACTGCGGAGATGACGCCCATAATCACTGT
CGAGACGTGCACTATGGCGTGTTTGGCACTTTGGAAAGATTTAACGACAT
TCAACGAAAACGTCGGTTAGTGGGGGTGACAGAATACCTGAAATGGATTT
CACAGCAAGAGTCCCCAGCCTTTGTCAGCAAAGTGCTGGAGTCGCGTGGC
CCCGTTTCCCAGGATCTAGCCGATGTCGGCATACAAGTCGAGGAAGTCAA
GAAAGTCTTGAACGGAGGCCAGGTCCCGTCCCTGGACATGAACGCCTCTA
TAGGACTGTTCAGTACTCGTAATCACACAAACGATCAATCATGGATTAGT
CGATGGCTCCGTCGTTTGCTAGATGGCCCGGGATACGCGCCGGAGGACGA
CATCACGTCTCGCCTACTCGGAAATATCACGACTGGTATGCTGATCCTTG
CAGGCGTGCACGGCTTAGTTGGATCACCTTCTCATGACACCGATGCTCCT
TATGGATATGGCATGTGGTATTTTTTGGGGGGAATGACAAAATTATTTTA
CGGCCTTATGGCTGCACCGCCAGCCTGCTTGTTATTGACCGGCCGAGGCA
AACAACTATTGCAATCTGCACATGTAGCTTTCCTTACTGCCGTGGTATTC
TTGCCGCTCTACTACTCTGCAGACCTGCTCCCTACTCTCATCCTCTGTTT
AGTTAGTATCTTGTCAGTGATTGCGCACATTATAGGATTCTTAGTTGATG
TGCTCGTCGAATGTTCCCGTTTGGCGCAGCTTCTGCTTAGTGAACTGTGG
ACAAAGCTTTCTCAAATGTCTTCATTTGCGACAAATGCCTTTAATCGGAG
CACTTTGTGGCCGTGTTACCGTCGCATAGCAGAAGATGCTTTATTCAATA
TTGTAAAGAATCTGCGTTCTATAGGGTTACTTCCGCCTGCTGATGTAGAG
TTGAGAATCGCAACTGCTTGAAAGAAATACTTACAGATTAAAGATATCCC
TGGCTTGATTGGAACGAATTATCCAGCGCCTGAGACTTGTCAATTAGAAA
CAAAAC

protein sequence of rna3899

>rna3899-protein ID=rna3899-protein|Name=rna3899|organism=Nannochloropsis gaditana|type=polypeptide|length=518bp
MRGVYLEASEAQGSASHLLPTISESFSPAVLHEQDEPSYGVYRFKPNGDF
RSLLVHTAPDCMSSIAAVLRRPVLFTVRQIATDDPGPEVVMEEGSDPVDP
QDQIHNLSGQDHYQRVHGVWWRVEWHNKEGWMQGQDSLTGQQWPCLHSVT
SYRLFEAWRGAHTFWCRGRVMLGPDSKAFLCSNVLILLPALTFLIWIAPS
LPTLIARLVVEILAGCLIMSSMYFLWRTALSDPGIIPALPAHVRPAPPTS
PMHDVAPLPCPVKVSTMTRDLREGQERDLRSREGQLHGWRYCETCNVYRP
PRAKHCRSCNCCVERMDHHCIWVGTCVAKRNYRSFVLFVLTTTVLSVFVF
ATCLAVVVRHLLHSPEPVQALWMVAGQFPAAAGVGVFTFVMSWSLASLCS
YHIYLIATAQTTNEALRRPSRGRENEFNQGFWQNCVNVWTEDVGGSRLPA
TFHRKVCVEAWHKRTARPGGKCPESCNETKEREGSGEEGRQDLQGQNDEG
FSGDGDRCHLMSTEDMGH

mRNA from alignment at CM002462.1:369883..371757+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3899 ID=rna3899|Name=rna3899|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002462.1:369883..371757+ (Nannochloropsis gaditana)
TACAGGATACGATTGCATGTGCACAGTCACGCGGGGATCGGTGCGTGATC
AACGAACAAAATCCTCGAGATAGTGCATACATCAAACCGAAGCTACGAAC
AAGGCATATCAGCTACATTTGGCATGAGGGGTGTGTACCTCGAGGCAAGC
GAAGCGCAAGGTAGTGCATCCCATCTTCTACCAACAATTTCTGAGAGCTT
TTCACCGGCAGTATTGCATGAGCAGGATGAACCATCCTATGGCGTCTATC
GGTTCAAGGTATGTttcaaggaagaagacgaatgAGCCGGGGTTGGTGAT
GGATAAGTTGCGTTAAATTTTTACTATTATAGTCCATGGAAGGATGTTTG
ACGACATCATGACAACTTAATCATTCTCTTATGGACAGCCTAATGGCGAC
TTTCGCAGCTTGCTTGTTCACACGGCGCCAGACTGTATGAGCTCCATTGC
GGCAGTCCTTCGCAGACCCGTCTTGTTCACGGTGCGGCAGATTGCAACAG
ATGATCCTGGACCAGAAGTGGTcatggaagaaggaagtgaTCCCGTGGAT
CCACAAGACCAGATTCATAATCTCAGTGGTCAAGACCATTACCAGCGCGT
TCACGGAGTATGGTGGCGGGTGGAATGGCATAATAAGGAGGGTTGGATGC
AAGGACAGGATTCCTTAACAGGTCAACAATGGCCGTGTCTGCACTCTGTT
ACGTCGTATCGTCTTTTTGAGGCTTGGCGAGGAGCTCACACCTTTTGGTG
TCGAGGTCGGGTCATGCTGGGTCCAGATTCGAAGGCATTCTTATGCAGTA
ACGTCCTTATTTTACTTCCCGCGCTTACTTTCCTTATCTGGATcgcacct
tccctccccactctaATCGCTAGACTTGTGGTGGAAATTCTTGCTGGATG
CCTCATTATGAGCTCCATGTATTTCCTCTGGCGAACTGCCTTGTCGGATC
CCGGGATCATCCCCGCGCTCCCAGCACACGTCCGGCCGGCGCCACCCACC
AGTCCGATGCACGATgttgctcctcttccttgtcctgtaAAGGTATCGAC
GATGACGAGAGACCTGAGAGAAGGGCAAGAAAGAGATTTGAGAAGCAGAG
AGGGGCAGCTCCACGGTTGGCGGTACTGCGAGACCTGCAACGTGTACAGG
CCCCCGCGGGCGAAACATTGCCGCTCTTGCAACTGCTGCGTCGAGCGGAT
GGACCATCATTGCATCTGGGTGGGCACCTGCGTCGCCAAGAGAAATTATC
GAAGCTTCGTTCTCTTCGTCCTGACCACCACCGTTCTCAGCGTCTTCGTC
TTCGCCACATGCCTAGCTGTCGTCGTTCGTCATTTGTTGCACTCCCCGGA
GCCAGTGCAGGCACTCTGGATGGTTGCCGGGCAGTTTCCCGCCGCTGCCG
GGGTGGGAGTCTTCACCTTCGTCATGTCGTGGTCCCTGGCCTCCCTTTGC
TCTTATCACATTTACCTCATTGCCACCGCACAAACAACGAACGAGGCGCT
TCGACGCCCCtcgcgtgggagggaaaacgaGTTCAATCAAGGCTTTTGGC
AGAATTGTGTGAATGTGTGGACCGAGGACGTAGGAGGATCGCGCTTGCCA
GCCACTTTCCATAGGAAAGTGTGCGTCGAAGCCTGGCACAAGCGTACGGC
TCgcccgggggggaagtgCCCGGAGTCATGCAATGAgacgaaggaaagag
agggaagcggggaggaagggaggcaagatCTACAAGGACAAAACGACGAA
GGCTTTTCTGGCGACGGAGACAGGTGCCATCTCATGTCAACAGAAGATAT
GGGCCATTAGGGTCGAGCGAACGGTGAATCCTATGTGAAAAATCAATGTA
ATATACTCTATAAACGTTCCTGTGA

Coding sequence (CDS) from alignment at CM002462.1:369883..371757+

>rna3899 ID=rna3899|Name=rna3899|organism=Nannochloropsis gaditana|type=CDS|length=3114bp|location=Sequence derived from alignment at CM002462.1:369883..371757+ (Nannochloropsis gaditana)
ATGAGGGGTGTGTACCTCGAGGCAAGCGAAGCGCAAGGTAGTGCATCCCA
TCTTCTACCAACAATTTCTGAGAGCTTTTCACCGGCAGTATTGCATGAGC
AGGATGAACCATCCTATGGCGTCTATCGGTTCAAGCCTAATGGCGACTTT
CGCAGCTTGCTTGTTCACACGGCGCCAGACTGTATGAGCTCCATTGCGGC
AGTCCTTCGCAGACCCGTCTTGTTCACGGTGCGGCAGATTGCAACAGATG
ATCCTGGACCAGAAGTGGTcatggaagaaggaagtgaTCCCGTGGATCCA
CAAGACCAGATTCATAATCTCAGTGGTCAAGACCATTACCAGCGCGTTCA
CGGAGTATGGTGGCGGGTGGAATGGCATAATAAGGAGGGTTGGATGCAAG
GACAGGATTCCTTAACAGGTCAACAATGGCCGTGTCTGCACTCTGTTACG
TCGTATCGTCTTTTTGAGGCTTGGCGAGGAGCTCACACCTTTTGGTGTCG
AGGTCGGGTCATGCTGGGTCCAGATTCGAAGGCATTCTTATGCAGTAACG
TCCTTATTTTACTTCCCGCGCTTACTTTCCTTATCTGGATcgcaccttcc
ctccccactctaATCGCTAGACTTGTGGTGGAAATTCTTGCTGGATGCCT
CATTATGAGCTCCATGTATTTCCTCTGGCGAACTGCCTTGTCGGATCCCG
GGATCATCCCCGCGCTCCCAGCACACGTCCGGCCGGCGCCACCCACCAGT
CCGATGCACGATgttgctcctcttccttgtcctgtaAAGGTATCGACGAT
GACGAGAGACCTGAGAGAAGGGCAAGAAAGAGATTTGAGAAGCAGAGAGG
GGCAGCTCCACGGTTGGCGGTACTGCGAGACCTGCAACGTGTACAGGCCC
CCGCGGGCGAAACATTGCCGCTCTTGCAACTGCTGCGTCGAGCGGATGGA
CCATCATTGCATCTGGGTGGGCACCTGCGTCGCCAAGAGAAATTATCGAA
GCTTCGTTCTCTTCGTCCTGACCACCACCGTTCTCAGCGTCTTCGTCTTC
GCCACATGCCTAGCTGTCGTCGTTCGTCATTTGTTGCACTCCCCGGAGCC
AGTGCAGGCACTCTGGATGGTTGCCGGGCAGTTTCCCGCCGCTGCCGGGG
TGGGAGTCTTCACCTTCGTCATGTCGTGGTCCCTGGCCTCCCTTTGCTCT
TATCACATTTACCTCATTGCCACCGCACAAACAACGAACGAGGCGCTTCG
ACGCCCCtcgcgtgggagggaaaacgaGTTCAATCAAGGCTTTTGGCAGA
ATTGTGTGAATGTGTGGACCGAGGACGTAGGAGGATCGCGCTTGCCAGCC
ACTTTCCATAGGAAAGTGTGCGTCGAAGCCTGGCACAAGCGTACGGCTCg
cccgggggggaagtgCCCGGAGTCATGCAATGAgacgaaggaaagagagg
gaagcggggaggaagggaggcaagatCTACAAGGACAAAACGACGAAGGC
TTTTCTGGCGACGGAGACAGGTGCCATCTCATGTCAACAGAAGATATGGG
CCATTAGATGAGGGGTGTGTACCTCGAGGCAAGCGAAGCGCAAGGTAGTG
CATCCCATCTTCTACCAACAATTTCTGAGAGCTTTTCACCGGCAGTATTG
CATGAGCAGGATGAACCATCCTATGGCGTCTATCGGTTCAAGCCTAATGG
CGACTTTCGCAGCTTGCTTGTTCACACGGCGCCAGACTGTATGAGCTCCA
TTGCGGCAGTCCTTCGCAGACCCGTCTTGTTCACGGTGCGGCAGATTGCA
ACAGATGATCCTGGACCAGAAGTGGTcatggaagaaggaagtgaTCCCGT
GGATCCACAAGACCAGATTCATAATCTCAGTGGTCAAGACCATTACCAGC
GCGTTCACGGAGTATGGTGGCGGGTGGAATGGCATAATAAGGAGGGTTGG
ATGCAAGGACAGGATTCCTTAACAGGTCAACAATGGCCGTGTCTGCACTC
TGTTACGTCGTATCGTCTTTTTGAGGCTTGGCGAGGAGCTCACACCTTTT
GGTGTCGAGGTCGGGTCATGCTGGGTCCAGATTCGAAGGCATTCTTATGC
AGTAACGTCCTTATTTTACTTCCCGCGCTTACTTTCCTTATCTGGATcgc
accttccctccccactctaATCGCTAGACTTGTGGTGGAAATTCTTGCTG
GATGCCTCATTATGAGCTCCATGTATTTCCTCTGGCGAACTGCCTTGTCG
GATCCCGGGATCATCCCCGCGCTCCCAGCACACGTCCGGCCGGCGCCACC
CACCAGTCCGATGCACGATgttgctcctcttccttgtcctgtaAAGGTAT
CGACGATGACGAGAGACCTGAGAGAAGGGCAAGAAAGAGATTTGAGAAGC
AGAGAGGGGCAGCTCCACGGTTGGCGGTACTGCGAGACCTGCAACGTGTA
CAGGCCCCCGCGGGCGAAACATTGCCGCTCTTGCAACTGCTGCGTCGAGC
GGATGGACCATCATTGCATCTGGGTGGGCACCTGCGTCGCCAAGAGAAAT
TATCGAAGCTTCGTTCTCTTCGTCCTGACCACCACCGTTCTCAGCGTCTT
CGTCTTCGCCACATGCCTAGCTGTCGTCGTTCGTCATTTGTTGCACTCCC
CGGAGCCAGTGCAGGCACTCTGGATGGTTGCCGGGCAGTTTCCCGCCGCT
GCCGGGGTGGGAGTCTTCACCTTCGTCATGTCGTGGTCCCTGGCCTCCCT
TTGCTCTTATCACATTTACCTCATTGCCACCGCACAAACAACGAACGAGG
CGCTTCGACGCCCCtcgcgtgggagggaaaacgaGTTCAATCAAGGCTTT
TGGCAGAATTGTGTGAATGTGTGGACCGAGGACGTAGGAGGATCGCGCTT
GCCAGCCACTTTCCATAGGAAAGTGTGCGTCGAAGCCTGGCACAAGCGTA
CGGCTCgcccgggggggaagtgCCCGGAGTCATGCAATGAgacgaaggaa
agagagggaagcggggaggaagggaggcaagatCTACAAGGACAAAACGA
CGAAGGCTTTTCTGGCGACGGAGACAGGTGCCATCTCATGTCAACAGAAG
ATATGGGCCATTAG

Synonyms

Publications