rna3885, rna3885 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3885
Unique Name	rna3885
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3733
Alignment location	CM002462.1:322703..323752 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100018g19.2801.mrna
Orig protein id	gnl\|cribi\|Naga_100018g19.2801
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:322703..323752 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g19	gene3737	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26821.1	cds3876	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3885	rna3885-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:322703..323752-
coding sequence from alignment at CM002462.1:322703..323752-

mRNA sequence

>rna3885 ID=rna3885|Name=rna3885|organism=Nannochloropsis gaditana|type=mRNA|length=3733bp
GTGGAATAATTTCTCAGCTGTGGCCTCGAAGGTGAAACGAAATGTTTGAG
TGACTACGCAAAATCTCTATTGTATAGTTCCTGGCTTTCCACTTTTCACA
CCGCTCGCTCTGTACTAGTTTAATGGTGCCCTTGCGGCATGCGTGACCTG
GAGACTTTTGTTCTGTCTGAGGTTGCAGACCCTGATGAGATTAACGGAGA
TTGAAGCACGAAGAGAAGCACGACTTTTGCGTGTTAAAACGACAAATCAA
GAAGAACCTGATTGGGAATAGGTAAAAACATGCACTATGACGCATTGCAA
TGTTGCCTGACTCCGCGTGACGCGAATCCCGAACCTGGTTTTTCGTATAG
TTGTTGACCGGGGAGCTCTAACCATATGCTGATTGTTACATCACCTGGGC
AGCTAGCTCCAGGGGTAATTAACCCCTTACGCCCAAAGTATCTCGCTTAC
GTTGGGCGTGTCCTTATTTCGTAAGCAGAGGTAGCTCTCATCACCATTCT
CACTCTTTGGCCTAAATCGTCCTTATTCCCAAATCACAGGAGCTTTGTCA
CGGCTACCACCCAAGGGAACGGCTGAGAACTGCAGACTTACGTTGTCGTC
GGTCTTGCCTTCAAATTGAAACTGGAGCAAAGAAGGCAAGAAAGAGACGA
GGAGCGTCTACTTAGGGAGCAAGCTGCTGCGGCCGTTGCGCTGTCCGGTA
ACAACAGTATGGCGCCTCAAGATGGCAAAGGGTGGCCTTCTGTCGCCTTG
GAGAAGATGAGCAGAAGCAACAGCGAAGGCATACACGAGACAAACATGGA
GACGATGGTCTGGAACTTACTGAAGGACGATAAGCATCAACATTTGTCGT
CGAGCCCGGCAGCCAGTAGTAGCAGCGCAACGTACAGTCCATGTTTATTA
CCCCCTCCGGGCCTTACGGACAGCGAAAGCGAGTACATGTCCTCGGCACA
TGGGTCTCCCGTAGCACAACACAATTTATTTGGGGCGGATTCAGCGACAA
TGGTCCCTTCTCCGAGTGGAGAAGTCTTGGAGCTGATGTCGCGGCTCTGT
CTGGAGCGGGTACTTGGACGAGCTGATGGTACCGCACGCCGGACTGAGCT
AGGCATTGCTTTGCGCGATACCTTGGGCACTGCATATCAAAAAGGATGGG
TCAACACAGCGCTTGCCGAGCTAGAGCGGAAAGGACATGGACGGTTGTCG
TCCGATGGTGTTTTTTTCAAGGCTGCCAGCCCATTAATGAACGCTGTGGC
TAACATGCGGACTCACAACCGAGGCACTGCAACCGGCAGGCCTGGTTCCG
CAGCTTGCAGAGGGACTGGCAGAGCCTTGTTCAGCGATGCTCATGCAGGA
TCAACGAGCAGCCGGGGACGAAAGAGGGGTTTCCTGCTTATTGACGGGGG
GTACTATGAATGGTTGCAATGGCATGTGCTGCAGGGAAAGGCCTCTACGC
ACGCAATCGATGTTCGACTTCTCGTACAAAGCCTTGAAAATGTGCTGAAT
GTGAATTTCATCCGACGGCTGTACGTCCAGAGCACCAAGACGGGTGTCCG
TGGGAGCTTCCACAAGATGCTCGAAGCTACTGCGGGATTTGAAGTAGAAA
TTCACCGTTTGCAGGACTTGCCGGCTACTCATCCGCAACGTAATACAGGC
ATTGCGATGACGGATCAGATTTTAGGATCTACCTTCAAGGCAGCCTTTGA
TGCCTTGGTGGTGCTTGCAGGAGCAGGCTCGGACGTGGCGCCCGCTTTCC
GGATGGCGCAAGCAGAAAATGAAAGTCGTTTTCGCAGTCGCCAACAAATG
CAGCATGTTATGGCCTTGGGCGGCAGCCGTATGAGTCCGGACCTTCTCCC
ATACATGTATCGGCCTCCTGCTGGTTCCCTTTTCATGTTTGAGAACCTAA
TGGCTGCTTGTATGGTACCGAAAACAGAGCTGAATCGTTTAAGCGAGCAT
GCGATATCTCCACACCGCAACGCCCGATCTTTGTCGCCACCTATGGCACG
CGGCAGTACGGCTGATAAGAAATTTGAAAGTTTTTCATCTTCTCTTTTCG
CACCTCCTGTGGGTGATTTACGAACGTCCACTCGCTCAGTCTCGGAGTCG
TTCATACACGCTGGGGAGCCTCTGGGCTTACCGCTTCAAGACGCGCAAAG
GCTTGATATAGACCCTTGTCACGGGGCGGGTGTCAGCGACATTGGTTTTG
GTTTGTGTCTGAGCAACAGTAGCAGCAGCGGGAGCGGCAGCGGTGGCGGA
AGTGTTGGTGGGAACATTGGTATCAGCCTAAGCGGCAGCGGAAGTGGAAG
CGGGACGGTGGCAGGAAACAGTTTCCCAGGAGAAGTAAACAGCACTCGAC
CTCGAAGGTGGTGTAATTTTGGCCATCGTTGTAAGTATTTTGAGGATGTA
GAGGCCAACGCCGTTCACTTTCATCGCTTCGCGCACGTCTGCCCAGACGA
CTTGCTTTGCCCGTTCATTCAGAACTACGCTGTCCACCGACTGTCGGAGG
AAGGCAAAGCTCACTTTGCAATGTGGAAACACTCGTGTCCACACGGACTC
GAGTGTCAGTACTTTGCTCAACCAGACAAAAATCGTCGGCACATAGAATT
CTTCACCCACAAGGCCAAAGTCCTCAACGCAGCGGCAGCAGCCGTTGCGC
ACCAGCAGGAACACTTTTCTCCAGGTCATGTTGCCTATCAGCAAGTAGGA
AAAGAACAAATGGTGCGGCAACAACCCTATGGGAGCCAGCAGTGTCATGA
CACGCATCATCGTCTTGTACCTAAAATTCCTATTACGTCAATCGTCCCCA
TGGACGCCTCCGTCACGTCTGGTCAATCCCTCCTGAGTCAAGCCCAAGTG
TACAAAACAGCATTTGAAAGGGAGAGCATACTCAGTAATTTTATCGGAGA
TTGCGATCCGGTAATGGTCAATCAAATGATACAACATCAACAGCAACAGC
ACACAGAGCAGCAACTAGCTTCTATTCCCTCATCATTTTTGCAGCAGCGA
TACTCGCCTCCGACAAGGCCCTCTTGGTCTAGCCCTTCACAGCTCGCGCT
TGATGAAAAGAGTGACGTGGATAGCGAAGAAGCCATTTTCGGTTGTAATT
GGTCACCTCGTGGATCCCAAAGTCATTAGATGAACGCGTCATATTGAACA
ATTTCACACAAAATTATAGCGGGGTTTCTTATTGCTCATCTTACGACGCA
TCAGTTGTAGCGAATATACATGTGTGTTATCAAGGGTACATGAAAAACAT
CACATGAGTTGTTAGAGTTCAGGATATGAAAGTCAGGGTGACTTTCGCGC
CATATGGGGAAAGAGATCATGTAGCACACGAATTTATATGATTGTGCACT
TCCAGTAGCGTGCTTCTTCAAGCACTGAGTATGATGAGTAGGACTAGCCA
CCACGAGATGAATGAGCAAAAACAAAACAACATTGGTCTTTTTAAAATAT
TGAAAATTGTCGGCAGCATGAAAAGTACATGAGTATGATTAAGTAAAAAA
TAATTAGGCCTGACATAAACAAGGCTACGTTAGGTAGGGCAGAAACATTG
AGCGCACCTGGCGCCCGGATTCATTACAAATTACAAGATGAAGCACTTCA
TTAGTATGCTATTTTAAAACTTGGAGGCGATCACTTCTGAGAAATAGTTT
CGGGTACTAAATTTAAAGTATCGATTTGCACGAACACTAGGTTTTCTTAG
GGGAAAGAATAATTGAGCATTTGATCGACGGTG

protein sequence of rna3885

>rna3885-protein ID=rna3885-protein|Name=rna3885|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MPATQGSASAAGAVSLVQNAFTSGAATLSGLPRYVTAKTRPRPPSPPKAP
KLTPQEVNLQHTARILWTLSFALLWLSLTSHGWQRAKYEGTREVDGQKYH
RAYIANYGLRNIAFDLTTSHVVVPYASWTIALEDDQLPYILILLVQFFMA
IATVAGTGVCLAHIRAKCARTAEGTNKYMRYSAYAAIPLLTFTGLASVAW
KCIPTSAFYVFCTNAGCVKEDAEGIKAVGVYYAWIGNLSSTVLSFFLFLT
LWRLSRYQDSDETEEVEIQLVDDQHNKQAIINARNKAFLVDGSGGVNPLK
MGAKVSTSLSIRSPAEAWNPQSAQLPYTAVGKVQSGGFGSTQPSWLTGV

mRNA from alignment at CM002462.1:322703..323752-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3885 ID=rna3885|Name=rna3885|organism=Nannochloropsis gaditana|type=mRNA|length=1050bp|location=Sequence derived from alignment at CM002462.1:322703..323752- (Nannochloropsis gaditana)
ATGCCAGCTACGCAAGGCAGTGCATCAGCGGCAGGCGCTGTGTCCTTGGT
ACAAAACGCCTTTACCTCAGGTGCCGCTACGTTAAGCGGCCTGCCTAGAT
ATGTTACGGCCAAGACACGTCCCAGGCCCCCTTCTCCGCCCAAAGCTCCT
AAGCTGACACCCCAAGAAGTAAACCTACAGCACACAGCTCGCATATTGTG
GACTCTTTCATTTGCTTTATTGTGGCTGAGTTTAACATCGCATGGCTGGC
AGCGAGCTAAGTATGAAGGTACTCGAGAAGTCGACGGGCAGAAATATCAT
CGAGCCTATATTGCCAATTACGGTCTGAGGAATATAGCTTTTGATCTTAC
GACCAGCCATGTAGTAGTACCGTACGCGAGCTGGACTATAGCTTTGGAGG
ATGACCAACTCCCGTACATCCTTATACTTCTTGTGCAGTTCTTTATGGCC
ATTGCCACCGTAGCAGGGACAGGGGTGTGCCTAGCTCATATCAGGGCCAA
ATGCGCAAGGACTGCCGAAGGGACCAATAAATATATGCGATATTCCGCAT
ATGCTGCCATCCCATTATTAACTTTCACCGGACTAGCTTCGGTGGCTTGG
AAATGTATTCCAACTTCGGCATTCTATGTGTTCTGTACAAATGCTGGCTG
CGTCAAGGAGGATGCGGAGGGCATAAAAGCAGTCGGAGTGTATTATGCAT
GGATTGGAAACTTGAGCTCTACGGTGTTGTCTTTCTTTCTTTTTTTGACG
CTTTGGCGCCTTTCACGGTATCAGGACAGCGATGAAACGGAAGAGGTTGA
GATACAGCTTGTAGACGATCAACACAACAAGCAAGCCATCATCAACGCCA
GGAACAAAGCTTTCCTTGTCGACGGGTCTGGGGGCGTAAATCCATTGAAA
ATGGGCGCCAAAGTATCCACTTCACTATCCATTCGGTCGCCTGCCGAGGC
TTGGAATCCACAAAGTGCACAGCTCCCTTACACTGCGGTCGGTAAGGTCC
AGAGCGGAGGCTTCGGGTCGACCCAACCGTCATGGTTGACAGGCGTTTGA

Coding sequence (CDS) from alignment at CM002462.1:322703..323752-

>rna3885 ID=rna3885|Name=rna3885|organism=Nannochloropsis gaditana|type=CDS|length=1050bp|location=Sequence derived from alignment at CM002462.1:322703..323752- (Nannochloropsis gaditana)
ATGCCAGCTACGCAAGGCAGTGCATCAGCGGCAGGCGCTGTGTCCTTGGT
ACAAAACGCCTTTACCTCAGGTGCCGCTACGTTAAGCGGCCTGCCTAGAT
ATGTTACGGCCAAGACACGTCCCAGGCCCCCTTCTCCGCCCAAAGCTCCT
AAGCTGACACCCCAAGAAGTAAACCTACAGCACACAGCTCGCATATTGTG
GACTCTTTCATTTGCTTTATTGTGGCTGAGTTTAACATCGCATGGCTGGC
AGCGAGCTAAGTATGAAGGTACTCGAGAAGTCGACGGGCAGAAATATCAT
CGAGCCTATATTGCCAATTACGGTCTGAGGAATATAGCTTTTGATCTTAC
GACCAGCCATGTAGTAGTACCGTACGCGAGCTGGACTATAGCTTTGGAGG
ATGACCAACTCCCGTACATCCTTATACTTCTTGTGCAGTTCTTTATGGCC
ATTGCCACCGTAGCAGGGACAGGGGTGTGCCTAGCTCATATCAGGGCCAA
ATGCGCAAGGACTGCCGAAGGGACCAATAAATATATGCGATATTCCGCAT
ATGCTGCCATCCCATTATTAACTTTCACCGGACTAGCTTCGGTGGCTTGG
AAATGTATTCCAACTTCGGCATTCTATGTGTTCTGTACAAATGCTGGCTG
CGTCAAGGAGGATGCGGAGGGCATAAAAGCAGTCGGAGTGTATTATGCAT
GGATTGGAAACTTGAGCTCTACGGTGTTGTCTTTCTTTCTTTTTTTGACG
CTTTGGCGCCTTTCACGGTATCAGGACAGCGATGAAACGGAAGAGGTTGA
GATACAGCTTGTAGACGATCAACACAACAAGCAAGCCATCATCAACGCCA
GGAACAAAGCTTTCCTTGTCGACGGGTCTGGGGGCGTAAATCCATTGAAA
ATGGGCGCCAAAGTATCCACTTCACTATCCATTCGGTCGCCTGCCGAGGC
TTGGAATCCACAAAGTGCACAGCTCCCTTACACTGCGGTCGGTAAGGTCC
AGAGCGGAGGCTTCGGGTCGACCCAACCGTCATGGTTGACAGGCGTTTGA

Synonyms

Publications