rna3884, rna3884 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3884
Unique Name	rna3884
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	426
Alignment location	CM002462.1:318880..322612 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100018g20.2818.mrna
Orig protein id	gnl\|cribi\|Naga_100018g20.2818
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:318880..322612 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g20	gene3736	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3884	rna3884-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26838.1	cds3875	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:318880..322612+
coding sequence from alignment at CM002462.1:318880..322612+

mRNA sequence

>rna3884 ID=rna3884|Name=rna3884|organism=Nannochloropsis gaditana|type=mRNA|length=426bp
ATGTATAGTATCCTAGGAGTCATGATAAAAACATGTATAGTTCACTTAAG
TGCAAAACATTTTAGAGCCGGGTCGCTTTGCTGCGGAAGTGCGTACCATG
TCGAGATTCTTGCATTTCAACGCAGTATGGCTCTGAAGATTAATCTATTC
TTTACATTTCAAAACGGTGCGTCATTTTTCGGGCTGAAAACCAGGCTACC
TAAAGTAAAGGATGTAATTGTAAATAGTGAAGCTTACCACTTGGTGATCC
TGCTCAAGAAGCGAGTCAAGAAAAAGACTGAGAAATTTCTATTAAGATTT
TTCATAGAGGGCTTGCATATAGACACGAAAGGATTTGAGAACAAGTTTCA
CGCTCAAGCTTGCTGGCTGCTGCTCCTGACACATTACGTAGACAGTCACA
AGGCAGCATGCGATTACTTCCACTGA

protein sequence of rna3884

>rna3884-protein ID=rna3884-protein|Name=rna3884|organism=Nannochloropsis gaditana|type=polypeptide|length=806bp
MAPQDGKGWPSVALEKMSRSNSEGIHETNMETMVWNLLKDDKHQHLSSSP
AASSSSATYSPCLLPPPGLTDSESEYMSSAHGSPVAQHNLFGADSATMVP
SPSGEVLELMSRLCLERVLGRADGTARRTELGIALRDTLGTAYQKGWVNT
ALAELERKGHGRLSSDGVFFKAASPLMNAVANMRTHNRGTATGRPGSAAC
RGTGRALFSDAHAGSTSSRGRKRGFLLIDGGYYEWLQWHVLQGKASTHAI
DVRLLVQSLENVLNVNFIRRLYVQSTKTGVRGSFHKMLEATAGFEVEIHR
LQDLPATHPQRNTGIAMTDQILGSTFKAAFDALVVLAGAGSDVAPAFRMA
QAENESRFRSRQQMQHVMALGGSRMSPDLLPYMYRPPAGSLFMFENLMAA
CMVPKTELNRLSEHAISPHRNARSLSPPMARGSTADKKFESFSSSLFAPP
VGDLRTSTRSVSESFIHAGEPLGLPLQDAQRLDIDPCHGAGVSDIGFGLC
LSNSSSSGSGSGGGSVGGNIGISLSGSGSGSGTVAGNSFPGEVNSTRPRR
WCNFGHRCKYFEDVEANAVHFHRFAHVCPDDLLCPFIQNYAVHRLSEEGK
AHFAMWKHSCPHGLECQYFAQPDKNRRHIEFFTHKAKVLNAAAAAVAHQQ
EHFSPGHVAYQQVGKEQMVRQQPYGSQQCHDTHHRLVPKIPITSIVPMDA
SVTSGQSLLSQAQVYKTAFERESILSNFIGDCDPVMVNQMIQHQQQQHTE
QQLASIPSSFLQQRYSPPTRPSWSSPSQLALDEKSDVDSEEAIFGCNWSP
RGSQSH

mRNA from alignment at CM002462.1:318880..322612+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3884 ID=rna3884|Name=rna3884|organism=Nannochloropsis gaditana|type=mRNA|length=3733bp|location=Sequence derived from alignment at CM002462.1:318880..322612+ (Nannochloropsis gaditana)
GTGGAATAATTTCTCAGCTGTGGCCTCGAAGGTGAAACGAAATGTTTGAG
TGACTACGCAAAATCTCTATTGTATAGTTCCTGGCTTTCCACTTTTCACA
CCGCTCGCTCTGTACTAGTTTAATGGTGCCCTTGCGGCATGCGTGACCTG
GAGACTTTTGTTCTGTCTGAGGTTGCAGACCCTGATGAGATTAACGGAGA
TTGAAGCACGAAGAGAAGCACGACTTTTGCGTGTTAAAACGACAAATCAA
GAAGAACCTGATTGGGAATAGGTAAAAACATGCACTATGACGCATTGCAA
TGTTGCCTGACTCCGCGTGACGCGAATCCCGAACCTGGTTTTTCGTATAG
TTGTTGACCGGGGAGCTCTAACCATATGCTGATTGTTACATCACCTGGGC
AGCTAGCTCCAGGGGTAATTAACCCCTTACGCCCAAAGTATCTCGCTTAC
GTTGGGCGTGTCCTTATTTCGTAAGCAGAGGTAGCTCTCATCACCATTCT
CACTCTTTGGCCTAAATCGTCCTTATTCCCAAATCACAGGAGCTTTGTCA
CGGCTACCACCCAAGGGAACGGCTGAGAACTGCAGACTTACGTTGTCGTC
GGTCTTGCCTTCAAATTGAAACTGGAGCAAAGAAGGCAAGAAAGAGACGA
GGAGCGTCTACTTAGGGAGCAAGCTGCTGCGGCCGTTGCGCTGTCCGGTA
ACAACAGTATGGCGCCTCAAGATGGCAAAGGGTGGCCTTCTGTCGCCTTG
GAGAAGATGAGCAGAAGCAACAGCGAAGGCATACACGAGACAAACATGGA
GACGATGGTCTGGAACTTACTGAAGGACGATAAGCATCAACATTTGTCGT
CGAGCCCGGCAGCCAGTAGTAGCAGCGCAACGTACAGTCCATGTTTATTA
CCCCCTCCGGGCCTTACGGACAGCGAAAGCGAGTACATGTCCTCGGCACA
TGGGTCTCCCGTAGCACAACACAATTTATTTGGGGCGGATTCAGCGACAA
TGGTCCCTTCTCCGAGTGGAGAAGTCTTGGAGCTGATGTCGCGGCTCTGT
CTGGAGCGGGTACTTGGACGAGCTGATGGTACCGCACGCCGGACTGAGCT
AGGCATTGCTTTGCGCGATACCTTGGGCACTGCATATCAAAAAGGATGGG
TCAACACAGCGCTTGCCGAGCTAGAGCGGAAAGGACATGGACGGTTGTCG
TCCGATGGTGTTTTTTTCAAGGCTGCCAGCCCATTAATGAACGCTGTGGC
TAACATGCGGACTCACAACCGAGGCACTGCAACCGGCAGGCCTGGTTCCG
CAGCTTGCAGAGGGACTGGCAGAGCCTTGTTCAGCGATGCTCATGCAGGA
TCAACGAGCAGCCGGGGACGAAAGAGGGGTTTCCTGCTTATTGACGGGGG
GTACTATGAATGGTTGCAATGGCATGTGCTGCAGGGAAAGGCCTCTACGC
ACGCAATCGATGTTCGACTTCTCGTACAAAGCCTTGAAAATGTGCTGAAT
GTGAATTTCATCCGACGGCTGTACGTCCAGAGCACCAAGACGGGTGTCCG
TGGGAGCTTCCACAAGATGCTCGAAGCTACTGCGGGATTTGAAGTAGAAA
TTCACCGTTTGCAGGACTTGCCGGCTACTCATCCGCAACGTAATACAGGC
ATTGCGATGACGGATCAGATTTTAGGATCTACCTTCAAGGCAGCCTTTGA
TGCCTTGGTGGTGCTTGCAGGAGCAGGCTCGGACGTGGCGCCCGCTTTCC
GGATGGCGCAAGCAGAAAATGAAAGTCGTTTTCGCAGTCGCCAACAAATG
CAGCATGTTATGGCCTTGGGCGGCAGCCGTATGAGTCCGGACCTTCTCCC
ATACATGTATCGGCCTCCTGCTGGTTCCCTTTTCATGTTTGAGAACCTAA
TGGCTGCTTGTATGGTACCGAAAACAGAGCTGAATCGTTTAAGCGAGCAT
GCGATATCTCCACACCGCAACGCCCGATCTTTGTCGCCACCTATGGCACG
CGGCAGTACGGCTGATAAGAAATTTGAAAGTTTTTCATCTTCTCTTTTCG
CACCTCCTGTGGGTGATTTACGAACGTCCACTCGCTCAGTCTCGGAGTCG
TTCATACACGCTGGGGAGCCTCTGGGCTTACCGCTTCAAGACGCGCAAAG
GCTTGATATAGACCCTTGTCACGGGGCGGGTGTCAGCGACATTGGTTTTG
GTTTGTGTCTGAGCAACAGTAGCAGCAGCGGGAGCGGCAGCGGTGGCGGA
AGTGTTGGTGGGAACATTGGTATCAGCCTAAGCGGCAGCGGAAGTGGAAG
CGGGACGGTGGCAGGAAACAGTTTCCCAGGAGAAGTAAACAGCACTCGAC
CTCGAAGGTGGTGTAATTTTGGCCATCGTTGTAAGTATTTTGAGGATGTA
GAGGCCAACGCCGTTCACTTTCATCGCTTCGCGCACGTCTGCCCAGACGA
CTTGCTTTGCCCGTTCATTCAGAACTACGCTGTCCACCGACTgtcggagg
aaggcaaagctCACTTTGCAATGTGGAAACACTCGTGTCCACACGGACTC
GAGTGTCAGTACTTTGCTCAACCAGACAAAAATCGTCGGCACATAGAATT
CTTCACCCACAAGGCCAAAGTCCTCAacgcagcggcagcagccgtTGCGC
ACCAGCAGGAACACTTTTCTCCAGGTCATGTTGCCTATCAGCAAGTAGGA
AAAGAACAAATGGTGCGGCAACAACCCTATGGGAGCCAGCAGTGTCATGA
CACGCATCATCGTCTTGTACCTAAAATTCCTATTACGTCAATCGTCCCCA
TGGACGCCTCCGTCACGTCTGGTCAATCCCTCCTGAGTCAAGCCCAAGTG
TACAAAACAGCATTTGAAAGGGAGAGCATACTCAGTAATTTTATCGGAGA
TTGCGATCCGGTAATGGTCAATCAAATGATACAACatcaacagcaacagc
acaCAGAGCAGCAACTAGCTTCTATTCCCTCATCATTTTTGCAGCAGCGA
TACTCGCCTCCGACAAGGCCCTCTTGGTCTAGCCCTTCACAGCTCGCGCT
TGATGAAAAGAGTGACGTGGATAGCGAAGAAGCCATTTTCGGTTGTAATT
GGTCACCTCGTGGATCCCAAAGTCATTAGATGAACGCGTCATATTGAACA
ATTTCACACAAAATTATAGCGGGGTTTCTTATTGCTCATCTTACGACGCA
TCAGTTGTAGCGAATATACATGTGTGTTATCAAGGGTACATGAAAAACAT
CACATGAGTTGTTAGAGTTCAGGATATGAAAGTCAGGGTGACTTTCGCGC
CATATGGGGAAAGAGATCATGTAGCACACGAATTTATATGATTGTGCACT
TCCAGTAGCGTGCTTCTTCAAGCACTGAGTATGATGAGTAGGACTAGCCA
CCACGAGATGAATGAGCAAAAACAAAACAACATTGGTCTTTTTAAAATAT
TGAAAATTGTCGGCAGCATGAAAAGTACATGAGTATGATTAAGTAAAAAA
TAATTAGGCCTGACATAAACAAGGCTACGTTAGGTAGGGCAGAAACATTG
AGCGCACCTGGCGCCCGGATTCATTACAAATTACAAGATGAAGCACTTCA
TTAGTATGCTATTTTAAAACTTGGAGGCGATCACTTCTGAGAAATAGTTT
CGGGTACTAAATTTAAAGTATCGATTTGCACGAACACTAGGTTTTCTTAG
GGGAAAGAATAATTGAGCATTTGATCGACGGTG

Coding sequence (CDS) from alignment at CM002462.1:318880..322612+

>rna3884 ID=rna3884|Name=rna3884|organism=Nannochloropsis gaditana|type=CDS|length=2421bp|location=Sequence derived from alignment at CM002462.1:318880..322612+ (Nannochloropsis gaditana)
ATGGCGCCTCAAGATGGCAAAGGGTGGCCTTCTGTCGCCTTGGAGAAGAT
GAGCAGAAGCAACAGCGAAGGCATACACGAGACAAACATGGAGACGATGG
TCTGGAACTTACTGAAGGACGATAAGCATCAACATTTGTCGTCGAGCCCG
GCAGCCAGTAGTAGCAGCGCAACGTACAGTCCATGTTTATTACCCCCTCC
GGGCCTTACGGACAGCGAAAGCGAGTACATGTCCTCGGCACATGGGTCTC
CCGTAGCACAACACAATTTATTTGGGGCGGATTCAGCGACAATGGTCCCT
TCTCCGAGTGGAGAAGTCTTGGAGCTGATGTCGCGGCTCTGTCTGGAGCG
GGTACTTGGACGAGCTGATGGTACCGCACGCCGGACTGAGCTAGGCATTG
CTTTGCGCGATACCTTGGGCACTGCATATCAAAAAGGATGGGTCAACACA
GCGCTTGCCGAGCTAGAGCGGAAAGGACATGGACGGTTGTCGTCCGATGG
TGTTTTTTTCAAGGCTGCCAGCCCATTAATGAACGCTGTGGCTAACATGC
GGACTCACAACCGAGGCACTGCAACCGGCAGGCCTGGTTCCGCAGCTTGC
AGAGGGACTGGCAGAGCCTTGTTCAGCGATGCTCATGCAGGATCAACGAG
CAGCCGGGGACGAAAGAGGGGTTTCCTGCTTATTGACGGGGGGTACTATG
AATGGTTGCAATGGCATGTGCTGCAGGGAAAGGCCTCTACGCACGCAATC
GATGTTCGACTTCTCGTACAAAGCCTTGAAAATGTGCTGAATGTGAATTT
CATCCGACGGCTGTACGTCCAGAGCACCAAGACGGGTGTCCGTGGGAGCT
TCCACAAGATGCTCGAAGCTACTGCGGGATTTGAAGTAGAAATTCACCGT
TTGCAGGACTTGCCGGCTACTCATCCGCAACGTAATACAGGCATTGCGAT
GACGGATCAGATTTTAGGATCTACCTTCAAGGCAGCCTTTGATGCCTTGG
TGGTGCTTGCAGGAGCAGGCTCGGACGTGGCGCCCGCTTTCCGGATGGCG
CAAGCAGAAAATGAAAGTCGTTTTCGCAGTCGCCAACAAATGCAGCATGT
TATGGCCTTGGGCGGCAGCCGTATGAGTCCGGACCTTCTCCCATACATGT
ATCGGCCTCCTGCTGGTTCCCTTTTCATGTTTGAGAACCTAATGGCTGCT
TGTATGGTACCGAAAACAGAGCTGAATCGTTTAAGCGAGCATGCGATATC
TCCACACCGCAACGCCCGATCTTTGTCGCCACCTATGGCACGCGGCAGTA
CGGCTGATAAGAAATTTGAAAGTTTTTCATCTTCTCTTTTCGCACCTCCT
GTGGGTGATTTACGAACGTCCACTCGCTCAGTCTCGGAGTCGTTCATACA
CGCTGGGGAGCCTCTGGGCTTACCGCTTCAAGACGCGCAAAGGCTTGATA
TAGACCCTTGTCACGGGGCGGGTGTCAGCGACATTGGTTTTGGTTTGTGT
CTGAGCAACAGTAGCAGCAGCGGGAGCGGCAGCGGTGGCGGAAGTGTTGG
TGGGAACATTGGTATCAGCCTAAGCGGCAGCGGAAGTGGAAGCGGGACGG
TGGCAGGAAACAGTTTCCCAGGAGAAGTAAACAGCACTCGACCTCGAAGG
TGGTGTAATTTTGGCCATCGTTGTAAGTATTTTGAGGATGTAGAGGCCAA
CGCCGTTCACTTTCATCGCTTCGCGCACGTCTGCCCAGACGACTTGCTTT
GCCCGTTCATTCAGAACTACGCTGTCCACCGACTgtcggaggaaggcaaa
gctCACTTTGCAATGTGGAAACACTCGTGTCCACACGGACTCGAGTGTCA
GTACTTTGCTCAACCAGACAAAAATCGTCGGCACATAGAATTCTTCACCC
ACAAGGCCAAAGTCCTCAacgcagcggcagcagccgtTGCGCACCAGCAG
GAACACTTTTCTCCAGGTCATGTTGCCTATCAGCAAGTAGGAAAAGAACA
AATGGTGCGGCAACAACCCTATGGGAGCCAGCAGTGTCATGACACGCATC
ATCGTCTTGTACCTAAAATTCCTATTACGTCAATCGTCCCCATGGACGCC
TCCGTCACGTCTGGTCAATCCCTCCTGAGTCAAGCCCAAGTGTACAAAAC
AGCATTTGAAAGGGAGAGCATACTCAGTAATTTTATCGGAGATTGCGATC
CGGTAATGGTCAATCAAATGATACAACatcaacagcaacagcacaCAGAG
CAGCAACTAGCTTCTATTCCCTCATCATTTTTGCAGCAGCGATACTCGCC
TCCGACAAGGCCCTCTTGGTCTAGCCCTTCACAGCTCGCGCTTGATGAAA
AGAGTGACGTGGATAGCGAAGAAGCCATTTTCGGTTGTAATTGGTCACCT
CGTGGATCCCAAAGTCATTAG

Synonyms

Publications