rna3883, rna3883 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3883
Unique Name	rna3883
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3720
Alignment location	CM002462.1:317660..318180 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100018g21.2806.mrna
Orig protein id	gnl\|cribi\|Naga_100018g21.2806
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:317660..318180 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g21	gene3735	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3883	rna3883-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26826.1	cds3874	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:317660..318180-
coding sequence from alignment at CM002462.1:317660..318180-

mRNA sequence

>rna3883 ID=rna3883|Name=rna3883|organism=Nannochloropsis gaditana|type=mRNA|length=3720bp
ACTACGGGTAATTTGTCTGTATGCAAGCAAGGACGTAGCATGACGGCTTG
GCAAACCGTGGCTCCGTCCAAGTTTGGTTCTTTGTCCTGCGGGATTGGGT
CTTACCTTTCCCTTTCGATTCTCAAAGCGGGCTAGCAGAAAATAAAAACG
ACAAGTAGACTAGCTTATTACCGTAGATTTTTTACACGGCTCGTGAACTT
TTCTGTCTGGAAATGGACCTCTGTCCTGACTTATCGTGTTGCACGTCCGT
ATGACATGCCATCTATGCACAGGCCCATATCAATGTCTTGTTGCCGCGTA
AAATATGGCAAATAAGCTTATTTTCAAGCTACGTGGCTGACTCTCTGTCG
GTTTCCTCGAATCTTTCCATGCGTACGTTAAATTCATTTCCTTTTTATCT
TCCGACCCAAGGCAACTTCCCTCACAGGGAGTCCATATTCGTCTCTTAAC
ACTTCGCGTCGGAGATCGCCACCAAAGAGGCACCACTTGACGACGAGAGA
TCAGAAAGACAATGCGTGTCATTCGACGGGGTAGCACGTTAGCGCTTGCC
GTGGCTGCGGTAGGGATGTTCATGATCCTTTCCTGTCCTGCGCAAGCCCA
AGACGCAAAAAAGATCGACGCGAAAGCACCCAGCAATGATTCAACAACCG
CAAATGCTGCTGCTGCGGCTCAAGCAGCATCAAATGCGGCTGAAGCCGCT
TCGGAGGCCCTAAAGGAGTCCAATGGGGAAATTCCCAAGGTGGAGGACAT
GGCGTCAACTTTGCTATCCTCGTCCGGAATCTCGGAGCAGCTCAAAGCGG
CCAGCTTGGAACCTACAGGAGGATTTGGCTCCAACTCGGAGGTTTGGTCG
GCTTTTTTGAACTCTGCCCGTGATGGTGTGCAGGGAGGGTCGATGCAACA
TTACGCAAAGACCTTCGCAGGGCTTCAGGATGGAGACGCGAGCACAATTT
TAAACTCGGCGGTTCCGGGTGAGAGTGTGGATTCCAATTCTCTCTTGACC
ATGACCATGGGCGCTGATTACAACAAACAGCTGAAAGATATTCAAGACAC
ACTAATTTTGGCCTCGGGCTTGGATCCGGAGGCCAACATGGAGAACACCC
TCACGGACCCTGCCTTCTGGCTCCGCACAATGATGGGTGCTATCAAGGGT
GGCACGGGCGCCATTGAGACAGACTGTGCTTGGACTGCGTCTGCGGACTA
TCAGACTGCGAATCTCTTCTTCCCCGACGCCCAGTCCGTCTACCATCTGA
TGGTCTTCCCTAATTTCGGACCTTCTGATTTGGCCATGATCGAAGGCGAG
TTCCCCGACTCCCGCTACTTCTCTGTGCAGACGTACGACGAGAACTTCTC
GCCCATCGCCGGTTTAAAAGATTTGGAGGTGGTTCCCTCCGAGGGCGTCA
ACTCGTTTGCCAGAAAGTCCCCTTTGCAGATCCGGGACGGTCGCTTCAAA
ATTGTCCTCTCCAAGGACGGAAACCGGGGCTTCCCGAACGAGCTTCCTAT
CAATGTCGGCAACTTCTCCTCCACCACCACGGGATACGTCATGATGCGCA
TGTACGGCGTGGATCCATTAGCAAAGACAAACGCAAACAAGCTTGCAAAG
TGGGGATACAAGGACCCGCCCACTATTTCGCTTCGAACTGCTGGCTCTCT
GACCCCGACCACGTGGGACCAGGGGTGGAAAAAAATGCCTTTGTGCCCTG
ACACGAACGCGGAGATCATCACCAAGGCGGTCACGACGGCCGTAAATTCG
CGTCTCATCCAGATGAACTTCAAGGAGGACTCGGTGTCGTGCAGCATCGA
AAATGTCAAGGACGGCTTCATGCTCATGTCTCGGGAGCGGGCCTCGTCCA
GCCGCGCCCCGTTCGTGAATGCCGACGGCGGATACCTCATGGCGTGCGCA
AACTCACGACCGGAATACATCAAGAATAACGACCTCATCGCGGTGGTGAA
TACCTTTTTGCCGTCGACGCCTTATTCCAAATTTAAAGCTCGATTCATCG
GCTCCCCCGAGACCTACGACATGCGCTACGCATCTCTTTCCGTCTACGAC
CTTCGACCCCCGGGACCGGTACTGCGCACGTTCCCTGACGCCGAAATTCG
CGATTTCTACTACGACTTGTACGGCGCTGAATTGTGGGAAGAGGGCTTCC
AACGCAACGTCTCCATGGTGGTGGCCTCCAATCAAGCGGCCCTCGATCGA
TGCAAAGTGGACACCAGTGAGTCCCTGATTTTGACATTGGACGATCTCGA
GGAGCAGGCCTCAGGAGAGCCGACATCGCCCCCCGAATGGTGGTCGATTG
TCTACCGCGAATTGATCCCCCAGAGCCAGATCATCAACGGCACGAATGCA
GCCTCATATGGAATGAAAGAGCAAGACATCTACAAGACAAGCATCCAAGA
CGCCCGCGAGATCATGTGCGGCGAGAACGGTGACACCTGCGACCGAAACC
CTTACCGCGCCGCTTCCATCATGAAGGAGCACTACCCTCGTGTGAGTTGG
TACACCTGCTCCCCCAGTGGAGTCCTGGCCGTGGCCAACCCGGTCGTCGC
CTTTCAATACGACACGAAATTCGACAGCAAGGCCACAGCCCCTCGCTCCA
AACAGTACTTCTATCAATTCTGCCCCTACACTGTGAACGAGGCATTGGTC
AAGATGATGGGCCCCAGCACCGTCACCATTCAAGGCTACATGCAGGGAGG
AAAAACGGCGCCGGCGAACGCCTTGGCCACCTTCCCACTCTCCATTTCCA
ACAAGCAACCGACGTTTGTGGTGGGGGTTTCAATCAAGGCGCGAGATCCG
ATCGACGCCTACTTTAAGGGCGAGGTGGAGGTCTGCGGATATTCCTTCGT
GACGGACAGCAAATGGCGATGCACGGATCAGCCCCTCGCCGACGACGAGT
GGCTCAATCCCGACTTTAACGACGACAGCTGGCAGCGTGCCTCCTACGTG
GACGACGAGTACCATGTATCGACCATTTCCGACGAGGCCAAATTCATCAC
GCTGGGCGAGGGCGCCGTGGGCCTCTACTGCCGGGTGCTGCTGCCCAACC
CCACATTCATGTGAGATAATACTGGTTTGAAAAGATGGGACGGGGCCTGA
ACGAAAGGAGGAAAGCTAGTCTGGACTACAGCAAATGAGGGTACCGACCC
ATCTAGGTGTCAGAGACGGGAAGGAGGAGAGAACGAGAAGGGAGACAAAC
CAAGACTTGTGTTGTACAGTCGCGCATATGATGGTGGGGCGACAGAACAA
ACCAACGAAAAGAGCTCGAGCTTACTTGAATGGTCGGAGGGGGGGGCTTT
AAAGAAGACACTAGGACATGGACAGGCGTGCACGAATCTTACGTAATTCT
CCTCCTTCTGAGGAACAGATGTGCCCGTCACCCACACCCAGAGGGTCGCC
GGCGGAAGGGAAGGAGAAACATATGCATGCAGGAAGTGGTTTGAATTTCA
TGTGTACACGCCTTCAATGTATTTACGTCGAGCGGCTTGGAAGGAAAGAA
AAGAAAAAATCAAAAGGATTTGACGGCAATAAAATATGTCACACGTAACT
TTGCGAAATGTGTGGCACGCACACCAAGCGTCGACTATACTTATGCTGGG
GCTACAAATCCCACTTATGCAACACGGCTATCCCGCTCCGAGTTATCTCT
TCGTCGCCTTCTATGGTCAGCAGGGTTCCGTCAGGCTTTACGACCGCTAA
TGTTGGAATGCCACGTTTCC

protein sequence of rna3883

>rna3883-protein ID=rna3883-protein|Name=rna3883|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MYSILGVMIKTCIVHLSAKHFRAGSLCCGSAYHVEILAFQRSMALKINLF
FTFQNGASFFGLKTRLPKVKDVIVNSEAYHLVILLKKRVKKKTEKFLLRF
FIEGLHIDTKGFENKFHAQACWLLLLTHYVDSHKAACDYFH

mRNA from alignment at CM002462.1:317660..318180-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3883 ID=rna3883|Name=rna3883|organism=Nannochloropsis gaditana|type=mRNA|length=521bp|location=Sequence derived from alignment at CM002462.1:317660..318180- (Nannochloropsis gaditana)
ATGTATAGTATCCTAGGAGTCATGATAAAAACATGTATAGTTCACTTAAG
TGCAAAACATTTTAGAGCCGGGTCGCTTTGCTGCGGAAGTGCGTACCATG
TCGAGATTCTTGCATTTCAACGCAGTATGGCTCTGAGTCTGCAAGGCAAG
GATTAGCACACCTGAAGATCTAAGTCTAATAGATCGCAAGAGATTAATCT
ATTCTTTACATTTCAAAACGGTGCGTCATTTTTCGGGCTGAAAACCAGGC
TACCTAAAGTAAAGGATGTAATTGTAAATAGTGAAGCTTACCACTTGGTG
ATCCTGCTCAAGAAGCGAGTCAAGAAAAAGACTGAGAAATTTCTATTAAG
ATTTTTCGTACCACTAGTCTTAAAGCTATGCAAGAATATCATTTTTAGAT
AGAGGGCTTGCATATAGACACGAAAGGATTTGAGAACAAGTTTCACGCTC
AAGCTTGCTGGCTGCTGCTCCTGACACATTACGTAGACAGTCACAAGGCA
GCATGCGATTACTTCCACTGA

Coding sequence (CDS) from alignment at CM002462.1:317660..318180-

>rna3883 ID=rna3883|Name=rna3883|organism=Nannochloropsis gaditana|type=CDS|length=1278bp|location=Sequence derived from alignment at CM002462.1:317660..318180- (Nannochloropsis gaditana)
ATAGAGGGCTTGCATATAGACACGAAAGGATTTGAGAACAAGTTTCACGC
TCAAGCTTGCTGGCTGCTGCTCCTGACACATTACGTAGACAGTCACAAGG
CAGCATGCGATTACTTCCACTGAAGATTAATCTATTCTTTACATTTCAAA
ACGGTGCGTCATTTTTCGGGCTGAAAACCAGGCTACCTAAAGTAAAGGAT
GTAATTGTAAATAGTGAAGCTTACCACTTGGTGATCCTGCTCAAGAAGCG
AGTCAAGAAAAAGACTGAGAAATTTCTATTAAGATTTTTCATGTATAGTA
TCCTAGGAGTCATGATAAAAACATGTATAGTTCACTTAAGTGCAAAACAT
TTTAGAGCCGGGTCGCTTTGCTGCGGAAGTGCGTACCATGTCGAGATTCT
TGCATTTCAACGCAGTATGGCTCTGAATAGAGGGCTTGCATATAGACACG
AAAGGATTTGAGAACAAGTTTCACGCTCAAGCTTGCTGGCTGCTGCTCCT
GACACATTACGTAGACAGTCACAAGGCAGCATGCGATTACTTCCACTGAA
GATTAATCTATTCTTTACATTTCAAAACGGTGCGTCATTTTTCGGGCTGA
AAACCAGGCTACCTAAAGTAAAGGATGTAATTGTAAATAGTGAAGCTTAC
CACTTGGTGATCCTGCTCAAGAAGCGAGTCAAGAAAAAGACTGAGAAATT
TCTATTAAGATTTTTCATGTATAGTATCCTAGGAGTCATGATAAAAACAT
GTATAGTTCACTTAAGTGCAAAACATTTTAGAGCCGGGTCGCTTTGCTGC
GGAAGTGCGTACCATGTCGAGATTCTTGCATTTCAACGCAGTATGGCTCT
GAATAGAGGGCTTGCATATAGACACGAAAGGATTTGAGAACAAGTTTCAC
GCTCAAGCTTGCTGGCTGCTGCTCCTGACACATTACGTAGACAGTCACAA
GGCAGCATGCGATTACTTCCACTGAAGATTAATCTATTCTTTACATTTCA
AAACGGTGCGTCATTTTTCGGGCTGAAAACCAGGCTACCTAAAGTAAAGG
ATGTAATTGTAAATAGTGAAGCTTACCACTTGGTGATCCTGCTCAAGAAG
CGAGTCAAGAAAAAGACTGAGAAATTTCTATTAAGATTTTTCATGTATAG
TATCCTAGGAGTCATGATAAAAACATGTATAGTTCACTTAAGTGCAAAAC
ATTTTAGAGCCGGGTCGCTTTGCTGCGGAAGTGCGTACCATGTCGAGATT
CTTGCATTTCAACGCAGTATGGCTCTGA

Synonyms

Publications