rna3876, rna3876 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3876
Unique Name	rna3876
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1359
Alignment location	CM002462.1:296888..298876 +

Link to JBrowse

Properties


Property Name	Value
Product	vacuolar fusion protein mon1
Orig transcript id	gnl\|cribi\|Naga_100018g29.2817.mrna
Orig protein id	gnl\|cribi\|Naga_100018g29.2817
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:296888..298876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g29	gene3728	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3876	rna3876-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26837.1	cds3867	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:296888..298876+
coding sequence from alignment at CM002462.1:296888..298876+

mRNA sequence

>rna3876 ID=rna3876|Name=rna3876|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp
ATGGCTGAGGAGCGTGGCGACGAGATGGCGGGCGAGAATCTGGGATTTGG
ATTCGTCCCCGGGGAGTGGAACGAACTAATTGGAGAAGACATCAAATACA
AGGTGCTTACCCCGGGGCATGGCCCCATAGCGGAGGTCCAAATGATGCTG
CGATGTAAATACGTCGGACGGCTTCGATCAACGGGGCAAATCTTTGAAGT
TGCGGAGGACACTGGTTACCGAATCGGAGAAAGCGACACCACTCCCGCCC
TGGAACTCGGTCTGCGCCATATGCGAAAGGGGGAAAAAGGCATGGTTCAT
GCGGAGGCTAAGTACGGCTTCGGCCCCCCCGGTCGTCCGGTTGTGGCGCC
GGGGGCGGAGGTGGCGGTTCCCCCGGACGCGGCCCTTGAGTACGAGATCG
AGGTCATTGACATCTTGCCGCCTTTCAACCCTAAAGATGCGCCGTTAGAG
GCACGTCTGGGTGAGACCGAGCTGAAAAAGCGACATGGGAACGGATTTTT
TCATCACAAGGACTATACTCGGGCCATCCGTTGTTACCAGGCAGGACTGA
AAGCCTTGGATGCAGAGAGTGTGGATGGGGAAGAGGAGGACGAGGAGGCT
TATGAAGCTATGGTGAAAATGTTTTGCGACGTGAGCAATAATTTGGCTGC
GGCCTTGATCAAGCTTGAGCGTTGGAAGGATGCCAAGGAAGTGTGCGTGA
AGGTCATCGAAGTGGATAAAGACAACGTGAAAGCCCTTTATCGCGGCGGA
GTAGCGGCCCTTCGACAGGACAATTTCTTGGAAGCGGAATTAGCTCTCAA
GGAAGCCGCGAAACTCGCTCCCAAAGATAAGCTGATCCATGCAGCCGTTC
AAGAATTGTATCGGAATCGGACTCAGTATATTGAGAAGGAGAAAGTCATG
ATGAAGAAGATGGGAGGCTTCCTTTTGACCCCTGCAGCCACCGGCATAGA
GGACAAAGAAGGAAAGGAGCCAATTGATACAGAGGAAATGGATGAGAACG
CAGCACAGGCGCATAACGAACAAATCAAACGAAAGGATATATCAGATACC
ATGAGTGAAGCCAAGAGGGACCATTCGAAAGTAGAGGCAGTCGATGCGGT
GGTAAGGGAGGAAGAGGAGGAGAATCAGTCGCAAACGACGGCCGAAATTA
CTGACGATGCTGCACCTCTGGAACAGGAAAATCGTCCAATCAACCCATGG
CTTGCCTGGTACATATCGCACTACGATTGGTTTGTGACTGCGGCGTTCAT
AATTTTACCATTACTCTTCCTCTGGGGTGACATTAAGTCGTCGTGGGCGC
GTAGATTAAGTGAGGTTGGCAAAGGAGGAGGCCAGGTGGGATCAGCGGGC
GAACTATGA

protein sequence of rna3876

>rna3876-protein ID=rna3876-protein|Name=rna3876|organism=Nannochloropsis gaditana|type=polypeptide|length=662bp
MGDQHAVDLASQTVESLHLDEDDEFVTPSPSPCTREPENTPASTLPNPKV
TSPASSPALVSPRTNNVVEGVDPCGATSKPSSPPPPESQAIDLSTGKHFF
VLSHAGKPIYSRLGDEQQLGPVMGMVQAVVSLSQSLGNPRRNGDKGGKET
TKSSSRHSNGNEANCCLRSIRTVGGCRQFVFLLRQELIFMVVSNTREPEP
FLRLQLEYLYHQIVFLLTSPRITHCFAVNPAYDLRELLGGTHRILSGIAD
MASPTRDSLGNLLTSAAHALPLDPTLRHDLAQALVNICASTPGLQPVLYA
LLLSGNRLVTLVEPRDPPWHRLRASDLLLLSNFLTTQPFFRTENETWTPI
CLPRFNDTGFLYAFVACMDPRHSLYLLLVSPTQEPEQFRASSKVRKAAQA
LFEERGWLAALKEAAAGEHRQRALNKYSNSGMAFHFMYKFCPVTGREGGR
GENGRGSGGKGDGRDTSDRARALPQSISSNFFFPYVDEEAKQAVWNLYAK
ALLQLRYGGREGGTGWAHAGDRMDCIFKDAGGEGGKGVGVGNREWHSTSL
SASSGPSSSGVDRVPDDADRGGRRRRSDDSGESGKGCVDCMMEVFEKKNV
HSLVYELRETDCLVVSVGPDFELFALLSAAPTLRESLQSLNRMLRAIKRD
ERWLFMVEAAHW

mRNA from alignment at CM002462.1:296888..298876+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3876 ID=rna3876|Name=rna3876|organism=Nannochloropsis gaditana|type=mRNA|length=1989bp|location=Sequence derived from alignment at CM002462.1:296888..298876+ (Nannochloropsis gaditana)
ATGGGGGATCAACATGCAGTGGATCTGGCCTCTCAAACGGTTGAGTCGCT
GCAcctcgacgaggacgacgagttTGTGAccccttctccgtcacctTGCA
CCCGCGAACCCGAAAATACGCCCGCTTCCACCCTTCCAAACCCGAAAGTC
ACCTCgcctgcctcttctcccgcgtTGGTGTCTCCCCGTACCAATAATGT
GGTGGAAGGTGTGGATCCTTGCGGCGCGACAAGCAAGCCTTCATCACCGC
CCCCACCGGAATCACAAGCAATCGACTTGAGCACAGGGAAGCACTTTTTT
GTCCTCAGCCATGCAGGGAAACCCATATATTCTCGACTTGGCGACGAGCA
GCAGCTTGGTCCGGTGATGGGAATGGTGCAAGCCGTTGTTAGCTTGTCGC
AGAGCCTTGGTAATCCTCGTCGGAATGGGGATAAAGGGGGCAAAGAGACG
ACAAAGTCGTCGTCCCGGCACTCGAACGGCAATGAGGCAAATTGTTGTCT
TCGTTCCATCCGCACTGTCGGTGGATGCCGGCAatttgtcttccttctcc
gccaggAGCTGATTTTTATGGTGGTGAGCAACACCCGCGAGCCCGAGCCT
TTTCTCCGCCTGCAACTAGAATACCTTTACCATCAaatcgtcttccttct
tacCTCCCCTCGTATCACGCATTGCTTTGCTGTCAATCCTGCGTATGACC
TTCGCGAGCTCCTGGGCGGGACGCATCGGATATTGTCAGGGATCGCGGAC
ATGGCCTCGCCCACCCGCGACTCCCTCGGGAACCTCCTGACCAGCGCcgc
gcacgccctccccttggaCCCCACTCTCCGCCACGACCTGGCGCAAGCCC
TCGTTAATATCTGCGCTTCCACTCCAGGACTCCAGCCTGTGCTCtacgcc
ctccttctgtcTGGCAACCGGCTGGTCACCCTGGTGGAGCCCCGGGACCC
GCCCTGGCACCGTTTGCGCGCCTCCGacctccttctgctctcGAATTTCC
TTACCACCCAGCCCTTTTTCCGGACGGAGAATGAAACGTGGACCCccatc
tgcctccctcgcttcaATGACACGGGCTTCTTGTACGCCTTCGTGGCCTG
TATGGATCCACGCCACAGTCTCTATctgctcctcgtctcccctaCGCAGG
AACCGGAGCAATTTCGGGCCTCCAGTAAAGTGCGGAAAGCCGCTCAAGCC
CTCTTTGAGGAGCGCGGGTGGCTCGCTGCtttgaaggaggcggcggctgg
AGAGCATAGGCAACGGGCGCTCAACAAATATTCGAACTCCGGCATGGCCT
TTCATTTCATGTATAAATTTTGCCCAGTgacagggagagagggagggagg
ggggagaatgggagaggaagtggaggaaaaggagacggaagggaCACGAG
CGACAGGGCAAGGGCCCTACCGCAGAGCATCTCCTccaatttttttttcc
cctacgtggacgaggaggcgaagcaGGCGGTCTGGAACCTATACGCGAAG
GCCTTACTGCAGTTGCGGTAcgggggtagggagggtgggactgGTTGGGC
TCACGCGGGGGATCGCATGGACTGCATCTTCAAGGatgcgggaggggagg
gaggaaagggggtgggcgtggggaacCGTGAATGGCATTCAACGTCCCTG
TCAGCATCTTCCGGGCCCTCATCCAGTGGCGTGGACAGGGTCCCTGACGA
TGCGGAcagagggggcaggcggcgacGGAGCGATGACAGTGGAGAAAGCG
GTAAGGGCTGCGTGGATTGTATGATGGAGGtctttgaaaagaaaaacgtG
CACAGCTTAGTATACGAACTGCGGGAAACGGACTGTCTGGTTGTGAGCGT
CGGCCCGGATTTTGAGCTCTTTGCCTTGCTCTCGGCGGCACCGACCTTGA
GAGAAAGCTTGCAGTCATTGAATCGGATGCTTCGCGCCATCAAACGGGAC
GAACGGTGGTTGTTCATGGTAGAGGCCGCTCATTGGTGA

Coding sequence (CDS) from alignment at CM002462.1:296888..298876+

>rna3876 ID=rna3876|Name=rna3876|organism=Nannochloropsis gaditana|type=CDS|length=1989bp|location=Sequence derived from alignment at CM002462.1:296888..298876+ (Nannochloropsis gaditana)
ATGGGGGATCAACATGCAGTGGATCTGGCCTCTCAAACGGTTGAGTCGCT
GCAcctcgacgaggacgacgagttTGTGAccccttctccgtcacctTGCA
CCCGCGAACCCGAAAATACGCCCGCTTCCACCCTTCCAAACCCGAAAGTC
ACCTCgcctgcctcttctcccgcgtTGGTGTCTCCCCGTACCAATAATGT
GGTGGAAGGTGTGGATCCTTGCGGCGCGACAAGCAAGCCTTCATCACCGC
CCCCACCGGAATCACAAGCAATCGACTTGAGCACAGGGAAGCACTTTTTT
GTCCTCAGCCATGCAGGGAAACCCATATATTCTCGACTTGGCGACGAGCA
GCAGCTTGGTCCGGTGATGGGAATGGTGCAAGCCGTTGTTAGCTTGTCGC
AGAGCCTTGGTAATCCTCGTCGGAATGGGGATAAAGGGGGCAAAGAGACG
ACAAAGTCGTCGTCCCGGCACTCGAACGGCAATGAGGCAAATTGTTGTCT
TCGTTCCATCCGCACTGTCGGTGGATGCCGGCAatttgtcttccttctcc
gccaggAGCTGATTTTTATGGTGGTGAGCAACACCCGCGAGCCCGAGCCT
TTTCTCCGCCTGCAACTAGAATACCTTTACCATCAaatcgtcttccttct
tacCTCCCCTCGTATCACGCATTGCTTTGCTGTCAATCCTGCGTATGACC
TTCGCGAGCTCCTGGGCGGGACGCATCGGATATTGTCAGGGATCGCGGAC
ATGGCCTCGCCCACCCGCGACTCCCTCGGGAACCTCCTGACCAGCGCcgc
gcacgccctccccttggaCCCCACTCTCCGCCACGACCTGGCGCAAGCCC
TCGTTAATATCTGCGCTTCCACTCCAGGACTCCAGCCTGTGCTCtacgcc
ctccttctgtcTGGCAACCGGCTGGTCACCCTGGTGGAGCCCCGGGACCC
GCCCTGGCACCGTTTGCGCGCCTCCGacctccttctgctctcGAATTTCC
TTACCACCCAGCCCTTTTTCCGGACGGAGAATGAAACGTGGACCCccatc
tgcctccctcgcttcaATGACACGGGCTTCTTGTACGCCTTCGTGGCCTG
TATGGATCCACGCCACAGTCTCTATctgctcctcgtctcccctaCGCAGG
AACCGGAGCAATTTCGGGCCTCCAGTAAAGTGCGGAAAGCCGCTCAAGCC
CTCTTTGAGGAGCGCGGGTGGCTCGCTGCtttgaaggaggcggcggctgg
AGAGCATAGGCAACGGGCGCTCAACAAATATTCGAACTCCGGCATGGCCT
TTCATTTCATGTATAAATTTTGCCCAGTgacagggagagagggagggagg
ggggagaatgggagaggaagtggaggaaaaggagacggaagggaCACGAG
CGACAGGGCAAGGGCCCTACCGCAGAGCATCTCCTccaatttttttttcc
cctacgtggacgaggaggcgaagcaGGCGGTCTGGAACCTATACGCGAAG
GCCTTACTGCAGTTGCGGTAcgggggtagggagggtgggactgGTTGGGC
TCACGCGGGGGATCGCATGGACTGCATCTTCAAGGatgcgggaggggagg
gaggaaagggggtgggcgtggggaacCGTGAATGGCATTCAACGTCCCTG
TCAGCATCTTCCGGGCCCTCATCCAGTGGCGTGGACAGGGTCCCTGACGA
TGCGGAcagagggggcaggcggcgacGGAGCGATGACAGTGGAGAAAGCG
GTAAGGGCTGCGTGGATTGTATGATGGAGGtctttgaaaagaaaaacgtG
CACAGCTTAGTATACGAACTGCGGGAAACGGACTGTCTGGTTGTGAGCGT
CGGCCCGGATTTTGAGCTCTTTGCCTTGCTCTCGGCGGCACCGACCTTGA
GAGAAAGCTTGCAGTCATTGAATCGGATGCTTCGCGCCATCAAACGGGAC
GAACGGTGGTTGTTCATGGTAGAGGCCGCTCATTGGTGA

Synonyms

Publications