rna3875, rna3875 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3875
Unique Name	rna3875
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1992
Alignment location	CM002462.1:294939..296649 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans isomerase fkbp8
Orig transcript id	gnl\|cribi\|Naga_100018g30.2768.mrna
Orig protein id	gnl\|cribi\|Naga_100018g30.2768
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:294939..296649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g30	gene3727	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3875	rna3875-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26788.1	cds3866	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:294939..296649+
coding sequence from alignment at CM002462.1:294939..296649+

mRNA sequence

>rna3875 ID=rna3875|Name=rna3875|organism=Nannochloropsis gaditana|type=mRNA|length=1992bp
ATGCTATCGATTATTTGCCTTTGCCGCGAAGAGCTATCGTCGGGTAGAGC
ACCGTTGTGCCGGACAGGAACGGGGCATTTGCCCAGGCCAGGGAGCCAAA
CGTTGGAGGCAAGCCACAAGAAACGAAAAGCTGCACTGTCCCAGCGAGAG
ACTCCTGACGCTGCGAGTATGACGCAAAGACTCTCCGACAGCGGGGGCTC
TCACCGCAAGAGTACTGGCAATCCTGCTGTCTTTGCCCCATCGCATCCTC
CGCAAGTGCCGCCTGCGCGCGCCGTCCCGAACATTTTTGAACGCTTGCAG
CTAGGAAAACCTAAAACTCGGCGGGCGTTGCGGTCTCCTTCCTCCCCAGC
AACCTCAAACAGCATCGCGAAGGAGGAGGATGACGCAAAGAAGAAGGCAC
TTATCACAGGTAGCAGCGGTGACGGTAACCAGGCTGGCAGCGCTGCAAAC
CGGAATAAGGATGTTTGGATTGGAATCGGAAGCAGCGGAGCAGGAAGTCC
CCGAAAGGACGCCAAGGGCCTTAGTGAGGTCAGCGCTAATCAAACCAACC
ACCGATCGACCTTCATCAGCACCTCCCTGGCTGGCCCATCGCCTCGAAAG
GGTAGTAATACCCTGGCCGTGCCCGGACATTTGAAAATGCGTACACATTC
CACGCCCGCTTTCGCATCTTCGGGGTCGGCGTCCGTTTCAACAGCCACCA
TAATGGGGGCCCTGGGGGGAGGGAGTTCTGGCAGCGAGGGGAGATTGCCC
AGTCCGGATCCGGAGGAGGTCGAGGCCGACGGGCGCCGGGCCCTCTCCTA
CGTGGACCGGAAGTTCGACGAGTTGATGGAGGCGGAGGTGGTGGACATGG
CACTATTGCGCGAACAGAGCTGGGGCGGGATCCCTGATCGGCACCGGGGG
ACGGTCTGGCGCTTGCTCTTGGGGTACTTGCCCGCCCACAGGGACCGGCG
GGCGGCGACGCTGCGTCGGAAACGACGGGAATACGCGGAGATCCTGCCCT
CGTATTTCAACGTCCCGGCGGAGGAGCGGACAATGCAGGAGCAAGAAATG
CTTCGGCAGATCCTGGTCGACCTCCCGCGGACCCAACCCGACATGCCCCT
CTTCCACCAGGAGGAGACCCAGCGGTGCATGGAAAGGGTCCTCTACCTGT
GGGCCGTGCGTCACCCCGCCAGCGGCTACGTGCAGGGCATGAACGATTTG
ATCACGCCCTTCATCCTCGTCTTCTTGGCCGAGCGCCTCGTACACCCGTC
CTCGTCCTCCCTCCCGCCCTCCGCTTCCCTCTCCCCCCCTGCCACGCACC
GTGGCCACCACGACCGCTCCCTTCCTTCTCCCACCCAGGTCTCTCCATCC
TTGCCCTCCCCCTCCCCCCCTTCTTCCCGGGCATCCACCCCGCGCACGGG
CCGGTCGGCCAGCGGGATGGCTGCAGGCGAAGCGCAGTCTCTGGACGTCG
CTAAGGTACCCCGCCAAGTCTTGGAGGAGGTGGAGGCGGACGTGTACTGG
TGCATGTGCAAGCTGCTGGACAACATCCAGGACCACTACACATTCAGCCA
GCCAGGTTTGCAACGGATGATGATCCGCTTACAGGCCCTGGTTGAGAGGC
ATGACCCTCCCCTCCATCGGCACTTGGAGAGCGAGGGATTGCAATACGTG
CAATTCGCCTTTCGTTGGATGAACTGCCTCTTGATGAGGGAGTTGTCCTT
GGACGCGATCATCCGGGTATGGGACACGGAGCTGGCGGAGGAATTGGGAG
GATTCGAGGCCTTTCATGTCTACCTGTGCGCAGCGTTCCTTCTCCGCTTT
GCGGATCATCTGCGGACGCTCCCATTCCAAGATTTGGTCCTCTTTTTGCA
GGATCTGCCCACACATTCGTGGACGTTGCATGAAATCGAACCTTTGCTGT
CGCAAGCACACGTGCTGCGGGCCCTCTACCCCGATTTCGGACAGCCGGGG
GGCGCGCGAGTCATGCCTCCAACACGAGGGGGGAGAAATTGA

protein sequence of rna3875

>rna3875-protein ID=rna3875-protein|Name=rna3875|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MAEERGDEMAGENLGFGFVPGEWNELIGEDIKYKVLTPGHGPIAEVQMML
RCKYVGRLRSTGQIFEVAEDTGYRIGESDTTPALELGLRHMRKGEKGMVH
AEAKYGFGPPGRPVVAPGAEVAVPPDAALEYEIEVIDILPPFNPKDAPLE
ARLGETELKKRHGNGFFHHKDYTRAIRCYQAGLKALDAESVDGEEEDEEA
YEAMVKMFCDVSNNLAAALIKLERWKDAKEVCVKVIEVDKDNVKALYRGG
VAALRQDNFLEAELALKEAAKLAPKDKLIHAAVQELYRNRTQYIEKEKVM
MKKMGGFLLTPAATGIEDKEGKEPIDTEEMDENAAQAHNEQIKRKDISDT
MSEAKRDHSKVEAVDAVVREEEEENQSQTTAEITDDAAPLEQENRPINPW
LAWYISHYDWFVTAAFIILPLLFLWGDIKSSWARRLSEVGKGGGQVGSAG
EL

mRNA from alignment at CM002462.1:294939..296649+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3875 ID=rna3875|Name=rna3875|organism=Nannochloropsis gaditana|type=mRNA|length=1711bp|location=Sequence derived from alignment at CM002462.1:294939..296649+ (Nannochloropsis gaditana)
ATGGCTGAGGAGCGTGGCGACGAGATGGCGGGCGAGAATCTGGGATTTGG
ATTCGTCCCCGGGGAGTGGAACGAACTAATTGGAGAAGACATCAAATACA
AGGTAGGAATAGGGAGTAACAGGCAATTCAAAGAGATTGTATAAcgtgaa
aaggaagaaatttCGTAGCGAAAGTTTCTTTCGGCTAATCACTCCTGTGT
GAAGGTGAAATAGACCAGTGTGGAATGCGCACTTGTACTTTTCGCTTTGC
TATCATCAGCCTCAGCCTTGTCACCCTGGAGTTCGATGGGAGAATGCGAC
CCTTTTGGACCTCAGACGATTTGAATATGGAATATAAAATAGGTGCTTAC
CCCGGGGCATGGCCCCATAGCGGAGGTCCAAATGATGCTGCGATGTAAAT
ACGTCGGACGGCTTCGATCAACGGGGCAAATCTTTGAAGTTGCGGAGGAC
ACTGGTTACCGAATCGGAGAAAGCGACACCACTCCCGCCCTGGAACTCGG
TCTGCGCCATATgcgaaagggggaaaaaggcatggTTCATGCGGAGGCTA
AGTACGGCTTCGGCCCCCCCGGTCGTCCGGTTGTGgcgccgggggcggag
gtggcggttCCCCCGGACGCGGCCCTTGAGTACGAGATCGAGGTCATTGA
CATCTTGCCGCCTTTCAACCCTAAAGATGCGCCGTTAGAGGCACGTCTGG
GTGAGACCGAGCTGAAAAAGCGACATGGGAACGGATTTTTTCATCACAAG
GACTATACTCGGGCCATCCGTTGTTACCAGGCAGGACTGAAAGCCTTGGA
TGCAGAGAGTGtggatggggaagaggaggacgaggaggcttATGAAGCTA
TGGTGAAAATGTTTTGCGACGTGAGCAATAATTTGGCTGCGGCCTTGATC
AAGCTTGAGCGTTGGAAGGATGCCAAGGTAAGCAAGGACCTCGACCGCCA
TCAATGTGCTGATGACTCCTTGCGTCTTTTCGTCTCCTTCATTCCACACA
CATTGAACCTTTCTTTGACAAACGCATGATGAACCACAGGAAGTGTGCGT
GAAGGTCATCGAAGTGGATAAAGACAACGTGAAAGCCCTTTATCGCGGCG
GAGTAGCGGCCCTTCGACAGGACAATTTCTTGGAAGCGGAATTAGCTCTC
AAGGAAGCCGCGAAACTCGCTCCCAAAGATAAGCTGATCCATGCAGCCGT
TCAAGAATTGTATCGGAATCGGACTCAGTATattgagaaggagaaagtca
tgatgaagaagatgggAGGCTTCCTTTTGACCCCTGCAGCCACCGGCATA
GAGgacaaagaaggaaaggagccAATTGATACagaggaaatggatgagAA
CGCAGCACAGGCGCATAACGAACAAATCAAACGAAAGGATATATCAGATA
CCATGAGTGAAGCCAAGAGGGACCATTCGAAAGTAGAGGCAGTCGATGCG
GtggtaagggaggaagaggaggagaatcaGTCGCAAACGACGGCCGAAAT
TACTGACGATGCTGCACCTCTGGAACAGGAAAATCGTCCAATCAACCCAT
GGCTTGCCTGGTACATATCGCACTACGATTGGTTTGTGACTGCGGCGTTC
ATAATTTTACCATTACTCTTCCTCTGGGGTGACATTAAGTCGTCGTGGGC
GCGTAGATTAAGTGAGGttggcaaaggaggaggccaggtgGGATCAGCGG
GCGAACTATGA

Coding sequence (CDS) from alignment at CM002462.1:294939..296649+

>rna3875 ID=rna3875|Name=rna3875|organism=Nannochloropsis gaditana|type=CDS|length=4077bp|location=Sequence derived from alignment at CM002462.1:294939..296649+ (Nannochloropsis gaditana)
ATGGCTGAGGAGCGTGGCGACGAGATGGCGGGCGAGAATCTGGGATTTGG
ATTCGTCCCCGGGGAGTGGAACGAACTAATTGGAGAAGACATCAAATACA
AGGTGCTTACCCCGGGGCATGGCCCCATAGCGGAGGTCCAAATGATGCTG
CGATGTAAATACGTCGGACGGCTTCGATCAACGGGGCAAATCTTTGAAGT
TGCGGAGGACACTGGTTACCGAATCGGAGAAAGCGACACCACTCCCGCCC
TGGAACTCGGTCTGCGCCATATgcgaaagggggaaaaaggcatggTTCAT
GCGGAGGCTAAGTACGGCTTCGGCCCCCCCGGTCGTCCGGTTGTGgcgcc
gggggcggaggtggcggttCCCCCGGACGCGGCCCTTGAGTACGAGATCG
AGGTCATTGACATCTTGCCGCCTTTCAACCCTAAAGATGCGCCGTTAGAG
GCACGTCTGGGTGAGACCGAGCTGAAAAAGCGACATGGGAACGGATTTTT
TCATCACAAGGACTATACTCGGGCCATCCGTTGTTACCAGGCAGGACTGA
AAGCCTTGGATGCAGAGAGTGtggatggggaagaggaggacgaggaggct
tATGAAGCTATGGTGAAAATGTTTTGCGACGTGAGCAATAATTTGGCTGC
GGCCTTGATCAAGCTTGAGCGTTGGAAGGATGCCAAGGAAGTGTGCGTGA
AGGTCATCGAAGTGGATAAAGACAACGTGAAAGCCCTTTATCGCGGCGGA
GTAGCGGCCCTTCGACAGGACAATTTCTTGGAAGCGGAATTAGCTCTCAA
GGAAGCCGCGAAACTCGCTCCCAAAGATAAGCTGATCCATGCAGCCGTTC
AAGAATTGTATCGGAATCGGACTCAGTATattgagaaggagaaagtcatg
atgaagaagatgggAGGCTTCCTTTTGACCCCTGCAGCCACCGGCATAGA
GgacaaagaaggaaaggagccAATTGATACagaggaaatggatgagAACG
CAGCACAGGCGCATAACGAACAAATCAAACGAAAGGATATATCAGATACC
ATGAGTGAAGCCAAGAGGGACCATTCGAAAGTAGAGGCAGTCGATGCGGt
ggtaagggaggaagaggaggagaatcaGTCGCAAACGACGGCCGAAATTA
CTGACGATGCTGCACCTCTGGAACAGGAAAATCGTCCAATCAACCCATGG
CTTGCCTGGTACATATCGCACTACGATTGGTTTGTGACTGCGGCGTTCAT
AATTTTACCATTACTCTTCCTCTGGGGTGACATTAAGTCGTCGTGGGCGC
GTAGATTAAGTGAGGttggcaaaggaggaggccaggtgGGATCAGCGGGC
GAACTATGAATGGCTGAGGAGCGTGGCGACGAGATGGCGGGCGAGAATCT
GGGATTTGGATTCGTCCCCGGGGAGTGGAACGAACTAATTGGAGAAGACA
TCAAATACAAGGTGCTTACCCCGGGGCATGGCCCCATAGCGGAGGTCCAA
ATGATGCTGCGATGTAAATACGTCGGACGGCTTCGATCAACGGGGCAAAT
CTTTGAAGTTGCGGAGGACACTGGTTACCGAATCGGAGAAAGCGACACCA
CTCCCGCCCTGGAACTCGGTCTGCGCCATATgcgaaagggggaaaaaggc
atggTTCATGCGGAGGCTAAGTACGGCTTCGGCCCCCCCGGTCGTCCGGT
TGTGgcgccgggggcggaggtggcggttCCCCCGGACGCGGCCCTTGAGT
ACGAGATCGAGGTCATTGACATCTTGCCGCCTTTCAACCCTAAAGATGCG
CCGTTAGAGGCACGTCTGGGTGAGACCGAGCTGAAAAAGCGACATGGGAA
CGGATTTTTTCATCACAAGGACTATACTCGGGCCATCCGTTGTTACCAGG
CAGGACTGAAAGCCTTGGATGCAGAGAGTGtggatggggaagaggaggac
gaggaggcttATGAAGCTATGGTGAAAATGTTTTGCGACGTGAGCAATAA
TTTGGCTGCGGCCTTGATCAAGCTTGAGCGTTGGAAGGATGCCAAGGAAG
TGTGCGTGAAGGTCATCGAAGTGGATAAAGACAACGTGAAAGCCCTTTAT
CGCGGCGGAGTAGCGGCCCTTCGACAGGACAATTTCTTGGAAGCGGAATT
AGCTCTCAAGGAAGCCGCGAAACTCGCTCCCAAAGATAAGCTGATCCATG
CAGCCGTTCAAGAATTGTATCGGAATCGGACTCAGTATattgagaaggag
aaagtcatgatgaagaagatgggAGGCTTCCTTTTGACCCCTGCAGCCAC
CGGCATAGAGgacaaagaaggaaaggagccAATTGATACagaggaaatgg
atgagAACGCAGCACAGGCGCATAACGAACAAATCAAACGAAAGGATATA
TCAGATACCATGAGTGAAGCCAAGAGGGACCATTCGAAAGTAGAGGCAGT
CGATGCGGtggtaagggaggaagaggaggagaatcaGTCGCAAACGACGG
CCGAAATTACTGACGATGCTGCACCTCTGGAACAGGAAAATCGTCCAATC
AACCCATGGCTTGCCTGGTACATATCGCACTACGATTGGTTTGTGACTGC
GGCGTTCATAATTTTACCATTACTCTTCCTCTGGGGTGACATTAAGTCGT
CGTGGGCGCGTAGATTAAGTGAGGttggcaaaggaggaggccaggtgGGA
TCAGCGGGCGAACTATGAATGGCTGAGGAGCGTGGCGACGAGATGGCGGG
CGAGAATCTGGGATTTGGATTCGTCCCCGGGGAGTGGAACGAACTAATTG
GAGAAGACATCAAATACAAGGTGCTTACCCCGGGGCATGGCCCCATAGCG
GAGGTCCAAATGATGCTGCGATGTAAATACGTCGGACGGCTTCGATCAAC
GGGGCAAATCTTTGAAGTTGCGGAGGACACTGGTTACCGAATCGGAGAAA
GCGACACCACTCCCGCCCTGGAACTCGGTCTGCGCCATATgcgaaagggg
gaaaaaggcatggTTCATGCGGAGGCTAAGTACGGCTTCGGCCCCCCCGG
TCGTCCGGTTGTGgcgccgggggcggaggtggcggttCCCCCGGACGCGG
CCCTTGAGTACGAGATCGAGGTCATTGACATCTTGCCGCCTTTCAACCCT
AAAGATGCGCCGTTAGAGGCACGTCTGGGTGAGACCGAGCTGAAAAAGCG
ACATGGGAACGGATTTTTTCATCACAAGGACTATACTCGGGCCATCCGTT
GTTACCAGGCAGGACTGAAAGCCTTGGATGCAGAGAGTGtggatggggaa
gaggaggacgaggaggcttATGAAGCTATGGTGAAAATGTTTTGCGACGT
GAGCAATAATTTGGCTGCGGCCTTGATCAAGCTTGAGCGTTGGAAGGATG
CCAAGGAAGTGTGCGTGAAGGTCATCGAAGTGGATAAAGACAACGTGAAA
GCCCTTTATCGCGGCGGAGTAGCGGCCCTTCGACAGGACAATTTCTTGGA
AGCGGAATTAGCTCTCAAGGAAGCCGCGAAACTCGCTCCCAAAGATAAGC
TGATCCATGCAGCCGTTCAAGAATTGTATCGGAATCGGACTCAGTATatt
gagaaggagaaagtcatgatgaagaagatgggAGGCTTCCTTTTGACCCC
TGCAGCCACCGGCATAGAGgacaaagaaggaaaggagccAATTGATACag
aggaaatggatgagAACGCAGCACAGGCGCATAACGAACAAATCAAACGA
AAGGATATATCAGATACCATGAGTGAAGCCAAGAGGGACCATTCGAAAGT
AGAGGCAGTCGATGCGGtggtaagggaggaagaggaggagaatcaGTCGC
AAACGACGGCCGAAATTACTGACGATGCTGCACCTCTGGAACAGGAAAAT
CGTCCAATCAACCCATGGCTTGCCTGGTACATATCGCACTACGATTGGTT
TGTGACTGCGGCGTTCATAATTTTACCATTACTCTTCCTCTGGGGTGACA
TTAAGTCGTCGTGGGCGCGTAGATTAAGTGAGGttggcaaaggaggaggc
caggtgGGATCAGCGGGCGAACTATGA

Synonyms

Publications