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Properties
| Property Name | Value |
|---|
| Product | ribosomal RNA large subunit methyltransferase |
| Orig transcript id | gnl|cribi|Naga_100018g32.2798.mrna |
| Orig protein id | gnl|cribi|Naga_100018g32.2798 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:287712..289889 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3872 ID=rna3872|Name=rna3872|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp
TCTTCCTTCGTGCCTTTTGGAGAGACATGGTTGGGATTGAGATGATTGGC
GCGACGAATGGTCGTTCGTGGGTGTCTTTGATCGCAATTTACCGTGCCCT
TTACCTGCACAGTACCTGCAAGCTGTGCGGTGCTGCGACCACTCCGGTCA
TTCGGCTCCTTTGAAATGAAAGAGGAGGGGGGGGGCATAAGAAATCAGAT
GGAGCAGTTTGGAAGTTACTGGCACAACGCCACCTTGTCGGGAACGCGAA
ATAGACACTCGGCAGCACTTGTGCTGTTTTTTGGTTTTTGCATGATGTGT
TCACATCTCTCTCTCATGCTAAGCTCCCAGGCCCACGGTCCCCCTCTTCT
CTTGAATCGCCACAGTTACCATACACACACCGACGATCAAATCATGGGAT
CAAACACGCTCGCCTCGACAATGACTCCTGAAATGGCTGTAGCTATGGTG
TGCATGGCTATGGTTCTCACCTTTTACCCGCCTTCACGCAAGGTAATTTC
TGCTGCAGGCTTCCTTGTCAAGGGCATGTTGGAATGCGCTGATGAGTACA
ACTCGGTGTACATCGACGACGAAGACCATCACTAGGAGGATCCAAAGCAA
AAGATGATGATGACGGTAACTGGGACGACGGGTTCAATTTTGGGGCGTGG
GAAGGGGGATACTCTATGGGAAAAGGTGCGTGGGATTCTTGTCAATCCTG
TGCTTTGGCTGCTACCTGGAGCTGTTTGTCACGGACACGACGAAAGTGGC
AGTAGAAGAGGAGAGACAAAGGTTGGGGGAATCAGCAGCTGGCGAGGAGC
GATTCAAAGCATGAGGAGGAGCGTGAGATGGATCGTGGTGGAGTGGGAGG
GACCGGCCGGTGGGAAGGCACCGAATTGTGAGTGGCAAGGAGTTATTGGA
GTGCTTTGTGGACTCTGTACAGATTAGCAAGCAGGAGAGGAGGTGTAGGT
CGAGATGGTGACCAATGTAGGGCTCAACCATAGGCTTCGGAAGAACGCTT
CGTCACAGCCAGCGCACGTGAGAGGAAGCTGCGCGGAAGGAAGGAAAGGC
TTGCAGGAGGAAATAGTGAATTAGGTGGGCTACAGGGAGGCATCTGGAAG
GTCTAGCCGAGGTTCAAGCGAGAAGACGGAGCGAGGAATAATCAAGCGGA
GGACCTGGGTGTTGACCGCGTGCTGGAGGGGTAAGGGGCAGGGAGGTGCG
CTTCAGGGAAGGATGAAGGAAAGCTAGGTAGCAAAGGAAAAGGAACCCAG
TGCTCAGCGGCGTAATCGCTTGAAAAATTACTCTGTAAGTATAAAACTGT
TTCTGACGAAGGGGGGGGGGCGTGAGGGAGTGCAGGCAGCCAAGGAGGTG
TCGGATCCCATATGTGGTGGGACGTCATGAAGTGGAATCATCTCGTCGAT
TCCTCGGGATATTTTTGGGAGTGGCGAGCGCAAGGAAAGATTTTTACGGT
GGGTGCGATGAGAGCGTGGGGGTCAGGCAGATAGTCTGTGTGCGGGAGGG
GGAGCGTAAGGCGAGAAGACAGGGTGGAGGTCACAGGCATAGCGAATTTT
GGCACCGCGAGTGCCGGCAGACGACGGGATGGATGCACGCGATGAGGGCC
TAAGGCTAGTGGTGGGACAACTTGGGTTCGAGAGCCTAGACAGGGTGATT
GTGGAACTGAAAGGCAGCTGGACGAAAGGACTTAGCACCGGAGGCTCCCC
TTTATGACGGGGAATCGGTACCTTTGTTCGCGCTCCAGTACTGAATACTC
GGAGGAAGGGAAAGGAAAAGCAAAAACATCATAATTCATGCGATTTTGGG
GGGGGGAAGGTGAGACTGCGCCCGGTCGCGTACTGAGCACGAACATCTTT
TGACAGGTTTGAGGAGAGGAAGAAAACGATGGCACGGAAGGGGATGCAGA
GGATCAATTCCTTGTGTTGGGGTCGGTGATGGAAGGGAGACTTGATGAGC
AGAAGAAGAAACCATGACCACGGGGAA back to topprotein sequence of rna3872 >rna3872-protein ID=rna3872-protein|Name=rna3872|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
MISVLQRAAAPRVFGAGLDCRLPLLERHAGNSPSHGVGTIVSVHQWIRRH
VNDPFVKASRKLELRSRAAFKLKEMQEKCRIMRPGDCVIDLGCAPGGWSQ
VVMQAIHPPSASSSLSGTSDNHVRAANNTPRSLFPPASGEGRVIGIDLRP
MAPVPGVSFVLGDFSNAETQAALRQALGRDVGGDGMQLEEGMWKDGGGEC
EGTADVILSDMAPDLSGDKFRDHRRTLDLAYQVLAFADTVFALQKVRKNS
ALTKKQRRKTVLCKLFKGRDEEELLRHARSRYEDVRILKPKASRGESGEQ
YMLARGFKGGI back to topmRNA from alignment at CM002462.1:287712..289889- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3872 ID=rna3872|Name=rna3872|organism=Nannochloropsis gaditana|type=mRNA|length=2178bp|location=Sequence derived from alignment at CM002462.1:287712..289889- (Nannochloropsis gaditana)
TTCCTGCCCTCAGTCATTTTTCCCGGGGTTTACGTAATCTCAGTTCCACT
CAGTACGGCCTCGCTTTGCGCTTCTATTGTAATAGAGAAGAGATTGACAA
TAGTTGATCTTCCTCCACGATAAGAGTGCTCACGGCCGGGTTGTAATGCG
ATTGCTCACATCCTGCATAAATCAACCTATTTGACTTACGCAGATAGCTA
CAAGTAGCCAACAACCTCCCCACCCAGTTTATTTTAAGTACCTCAGCATA
AATTGATGCAACAAGTGGAAAATTGCAATTTAAGAATGTACAGTATTTTG
AGCAGAACTATTACCATTGTGACCTAGCATGATTTCTGTTCTTCAGCGCG
CTGCCGCACCAAGGGTATTTGGGGCGGGTCTCGACTGTCGTCTTCCCTTG
CTAGAGCGTCACGCGGGCAATAGCCCCAGTCATGGTGTTGGCACCATTGT
TTCTGTGCACCAATGGATTCGTCGCCACGTCAACGATCCTTTTGTCAAAG
CCTCCCGCAAGCTAGAGCTCCGTTCCCGTGCTGCTTTCAAGCTCAAGGTA
ATGTATACAAGTTGTACGGGCTTGCGAGGTTGAAGGAGTCGATGTGCAAG
TCAATGGATACATGTTATTCGTGTTTTAGCTGGTCACGATAATACACTTG
TACTTGTACGTGATTGAAAACCAGTCCTTGCCTTCTTTTGTTTTTTCAGC
GTTCTCATCCCTTTAACATCTACACTGCGAATTTTCCATGCACATCATCG
TATGCGTCCTTGCAAAGGAAATGCAAGAAAAGTGCCGTATCATGCGCCCC
GGTGACTGGTGAGTGTTGAAAGCCGTTGAGCTGCTCTGCCAGAGTGCTTG
GCCCTTCACATCGATGGGATGGAACCCATGTGTCCATCGATGTTCAGACC
TTTTCCTTCCTGCTTCACCCGTTTCTCTTGAAATTTGCTCACCTTCATCA
CCCAACATGGTTGTGTGTAGTGTAATTGACCTCGGCTGCGCCCCTGGAGG
CTGGAGTCAGGTCGTAATGCAAGCCATCCACCCGCCCTCTGCGTCCTCTT
CCCTTTCCGGCACCAGCGATAACCATGTAAGAGCAGCAAATAACACTCCG
CGCTCCCTTTTTCCTCCTGCCTCAGGAGAGGGTCGGGTTATAGGGATCGA
TTTGCGGCCGATGGCACCGGTGCCGGGCGTTTCGTTCGTCTTGGGGGACT
TCAGCAATGCGGAGACCCAGGCGGCTCTACGACAAGCCCTGGGACGCGAC
GTGGGAGGGGACGGAATGCAGTTGGAAGAAGGGATGTGGAAAGACGGAGG
TGGAGAATGCGAGGGCACAGCTGACGTGATTCTCTCTGACATGGCTCCGG
ACTTGTCGGGGGACAAATTTAGGGACCATCGGCGCACACTTGATCTAGCA
TACCAGGTGAGGACAGAGCTGGGGAGAAGTAGAACTCTCTCTTGTTTCCA
CGCTTCAGAATTTTTTTGTGTAGGGAAGTATTTCTACGGCTATTTGTTGG
CGGCGCGGCTCGACATCAGCGCGCTGACAGGATTCTTACTTGAGCGCTTT
CCCTGTTCACTTTAGGTGTTGGCTTTTGCGGACACGGTATTTGCCTTGCA
GAAAGTACGCAAGAACTCTGCCCTTACGAAAAAGCAACGCAGGAAAACAG
TCTTATGTAAGCTTTTCAAAGGGCGAGATGAGGAGGAACTCCTGAGGCAC
GCACGAAGTCGGTACGAAGACGTCCGTATTTTGAAGCCGAAAGCATCCCG
TGGCGAGAGCGGGGAGCAATACATGCTAGCCCGAGGATTCAAAGGAGGGA
TTTGAGATGGCGTGGATGCGCACCTCTCTCAATATGTAAACACTCTCTTA
AGGAAAATGAATACTCAGCAGCGATTTGTTGGGTTTTATCCAACCTTGCG
CGGAGAAAAGTGTAGGACTTCATTCCTAGAGTCTATGAGTATAAAGAGGT
TTTTCAAGCTGTTCTCCAGCTTCTTATCTTTTCTTTTCCTCTCTTGCGAA
CATGTGGCAATGTCTGTCTAGTCATTTTAAGCTACGGTATGTCTAAACGT
AGATATTACCAGTGTGCTCACGCAGTTGCAGAAGTTTCTTCTTCGAATCC
ATCAGCTCAATACTGTAATTAAAAATGTTAAGCTGGCCCCCATCCCGTTC
TAACAAACATTATCATGTCATTTGACTG back to topCoding sequence (CDS) from alignment at CM002462.1:287712..289889- >rna3872 ID=rna3872|Name=rna3872|organism=Nannochloropsis gaditana|type=CDS|length=3744bp|location=Sequence derived from alignment at CM002462.1:287712..289889- (Nannochloropsis gaditana)
GTGTTGGCTTTTGCGGACACGGTATTTGCCTTGCAGAAAGTACGCAAGAA
CTCTGCCCTTACGAAAAAGCAACGCAGGAAAACAGTCTTATGTAAGCTTT
TCAAAGGGCGAGATGAGGAGGAACTCCTGAGGCACGCACGAAGTCGGTAC
GAAGACGTCCGTATTTTGAAGCCGAAAGCATCCCGTGGCGAGAGCGGGGA
GCAATACATGCTAGCCCGAGGATTCAAAGGAGGGATTTGATGTAATTGAC
CTCGGCTGCGCCCCTGGAGGCTGGAGTCAGGTCGTAATGCAAGCCATCCA
CCCGCCCTCTGCGTCCTCTTCCCTTTCCGGCACCAGCGATAACCATGTAA
GAGCAGCAAATAACACTCCGCGCTCCCTTTTTCCTCCTGCCTCAGGAGAG
GGTCGGGTTATAGGGATCGATTTGCGGCCGATGGCACCGGTGCCGGGCGT
TTCGTTCGTCTTGGGGGACTTCAGCAATGCGGAGACCCAGGCGGCTCTAC
GACAAGCCCTGGGACGCGACGTGGGAGGGGACGGAATGCAGTTGGAAGAA
GGGATGTGGAAAGACGGAGGTGGAGAATGCGAGGGCACAGCTGACGTGAT
TCTCTCTGACATGGCTCCGGACTTGTCGGGGGACAAATTTAGGGACCATC
GGCGCACACTTGATCTAGCATACCAGGAAATGCAAGAAAAGTGCCGTATC
ATGCGCCCCGGTGACTGATGATTTCTGTTCTTCAGCGCGCTGCCGCACCA
AGGGTATTTGGGGCGGGTCTCGACTGTCGTCTTCCCTTGCTAGAGCGTCA
CGCGGGCAATAGCCCCAGTCATGGTGTTGGCACCATTGTTTCTGTGCACC
AATGGATTCGTCGCCACGTCAACGATCCTTTTGTCAAAGCCTCCCGCAAG
CTAGAGCTCCGTTCCCGTGCTGCTTTCAAGCTCAAGGTGTTGGCTTTTGC
GGACACGGTATTTGCCTTGCAGAAAGTACGCAAGAACTCTGCCCTTACGA
AAAAGCAACGCAGGAAAACAGTCTTATGTAAGCTTTTCAAAGGGCGAGAT
GAGGAGGAACTCCTGAGGCACGCACGAAGTCGGTACGAAGACGTCCGTAT
TTTGAAGCCGAAAGCATCCCGTGGCGAGAGCGGGGAGCAATACATGCTAG
CCCGAGGATTCAAAGGAGGGATTTGATGTAATTGACCTCGGCTGCGCCCC
TGGAGGCTGGAGTCAGGTCGTAATGCAAGCCATCCACCCGCCCTCTGCGT
CCTCTTCCCTTTCCGGCACCAGCGATAACCATGTAAGAGCAGCAAATAAC
ACTCCGCGCTCCCTTTTTCCTCCTGCCTCAGGAGAGGGTCGGGTTATAGG
GATCGATTTGCGGCCGATGGCACCGGTGCCGGGCGTTTCGTTCGTCTTGG
GGGACTTCAGCAATGCGGAGACCCAGGCGGCTCTACGACAAGCCCTGGGA
CGCGACGTGGGAGGGGACGGAATGCAGTTGGAAGAAGGGATGTGGAAAGA
CGGAGGTGGAGAATGCGAGGGCACAGCTGACGTGATTCTCTCTGACATGG
CTCCGGACTTGTCGGGGGACAAATTTAGGGACCATCGGCGCACACTTGAT
CTAGCATACCAGGAAATGCAAGAAAAGTGCCGTATCATGCGCCCCGGTGA
CTGATGATTTCTGTTCTTCAGCGCGCTGCCGCACCAAGGGTATTTGGGGC
GGGTCTCGACTGTCGTCTTCCCTTGCTAGAGCGTCACGCGGGCAATAGCC
CCAGTCATGGTGTTGGCACCATTGTTTCTGTGCACCAATGGATTCGTCGC
CACGTCAACGATCCTTTTGTCAAAGCCTCCCGCAAGCTAGAGCTCCGTTC
CCGTGCTGCTTTCAAGCTCAAGGTGTTGGCTTTTGCGGACACGGTATTTG
CCTTGCAGAAAGTACGCAAGAACTCTGCCCTTACGAAAAAGCAACGCAGG
AAAACAGTCTTATGTAAGCTTTTCAAAGGGCGAGATGAGGAGGAACTCCT
GAGGCACGCACGAAGTCGGTACGAAGACGTCCGTATTTTGAAGCCGAAAG
CATCCCGTGGCGAGAGCGGGGAGCAATACATGCTAGCCCGAGGATTCAAA
GGAGGGATTTGATGTAATTGACCTCGGCTGCGCCCCTGGAGGCTGGAGTC
AGGTCGTAATGCAAGCCATCCACCCGCCCTCTGCGTCCTCTTCCCTTTCC
GGCACCAGCGATAACCATGTAAGAGCAGCAAATAACACTCCGCGCTCCCT
TTTTCCTCCTGCCTCAGGAGAGGGTCGGGTTATAGGGATCGATTTGCGGC
CGATGGCACCGGTGCCGGGCGTTTCGTTCGTCTTGGGGGACTTCAGCAAT
GCGGAGACCCAGGCGGCTCTACGACAAGCCCTGGGACGCGACGTGGGAGG
GGACGGAATGCAGTTGGAAGAAGGGATGTGGAAAGACGGAGGTGGAGAAT
GCGAGGGCACAGCTGACGTGATTCTCTCTGACATGGCTCCGGACTTGTCG
GGGGACAAATTTAGGGACCATCGGCGCACACTTGATCTAGCATACCAGGA
AATGCAAGAAAAGTGCCGTATCATGCGCCCCGGTGACTGATGATTTCTGT
TCTTCAGCGCGCTGCCGCACCAAGGGTATTTGGGGCGGGTCTCGACTGTC
GTCTTCCCTTGCTAGAGCGTCACGCGGGCAATAGCCCCAGTCATGGTGTT
GGCACCATTGTTTCTGTGCACCAATGGATTCGTCGCCACGTCAACGATCC
TTTTGTCAAAGCCTCCCGCAAGCTAGAGCTCCGTTCCCGTGCTGCTTTCA
AGCTCAAGGTGTTGGCTTTTGCGGACACGGTATTTGCCTTGCAGAAAGTA
CGCAAGAACTCTGCCCTTACGAAAAAGCAACGCAGGAAAACAGTCTTATG
TAAGCTTTTCAAAGGGCGAGATGAGGAGGAACTCCTGAGGCACGCACGAA
GTCGGTACGAAGACGTCCGTATTTTGAAGCCGAAAGCATCCCGTGGCGAG
AGCGGGGAGCAATACATGCTAGCCCGAGGATTCAAAGGAGGGATTTGATG
TAATTGACCTCGGCTGCGCCCCTGGAGGCTGGAGTCAGGTCGTAATGCAA
GCCATCCACCCGCCCTCTGCGTCCTCTTCCCTTTCCGGCACCAGCGATAA
CCATGTAAGAGCAGCAAATAACACTCCGCGCTCCCTTTTTCCTCCTGCCT
CAGGAGAGGGTCGGGTTATAGGGATCGATTTGCGGCCGATGGCACCGGTG
CCGGGCGTTTCGTTCGTCTTGGGGGACTTCAGCAATGCGGAGACCCAGGC
GGCTCTACGACAAGCCCTGGGACGCGACGTGGGAGGGGACGGAATGCAGT
TGGAAGAAGGGATGTGGAAAGACGGAGGTGGAGAATGCGAGGGCACAGCT
GACGTGATTCTCTCTGACATGGCTCCGGACTTGTCGGGGGACAAATTTAG
GGACCATCGGCGCACACTTGATCTAGCATACCAGGAAATGCAAGAAAAGT
GCCGTATCATGCGCCCCGGTGACTGATGATTTCTGTTCTTCAGCGCGCTG
CCGCACCAAGGGTATTTGGGGCGGGTCTCGACTGTCGTCTTCCCTTGCTA
GAGCGTCACGCGGGCAATAGCCCCAGTCATGGTGTTGGCACCATTGTTTC
TGTGCACCAATGGATTCGTCGCCACGTCAACGATCCTTTTGTCAAAGCCT
CCCGCAAGCTAGAGCTCCGTTCCCGTGCTGCTTTCAAGCTCAAG back to top
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