rna3871, rna3871 (mRNA) Nannochloropsis gaditana

Overview
Namerna3871
Unique Namerna3871
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length825
Alignment locationCM002462.1:285356..287332 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g33.2807.mrna
Orig protein idgnl|cribi|Naga_100018g33.2807
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:285356..287332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g33gene3724Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26827.1cds3862Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3871rna3871-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3871 ID=rna3871|Name=rna3871|organism=Nannochloropsis gaditana|type=mRNA|length=825bp
ATGGGAGGTGAAGTTCTTGTTCTAAATGGAAGGACGCATAAAGCAGCCTC
ATTCTTGCTGAATTTTGGGTTGTCCTTTTTCCATGCCCGATTTCAAGAAC
TGGCACTCAAAAAGCTTCTACTCATACAGACCAACCCACATGCCCCTCTC
CTAAGGTACATACGCAGATCCCTTTTGGCCGTAAAGACGTGCGTTTTGAC
AACTGCAGAACGTGGACACAGGCCTACTAGCTTGCTGCACCCTTTTTCTC
CGGCTGAAGCCATGGCTGAACGCAAAGCAGTCATCAAGAATGCCGATATG
TCGGAAGATATGCAACAAGATGCGGTAGATTGTGCGTCGCAGGCTTTGGA
TCAATTTAACATCGAGAAGGACATCGCAGCGTACGTCAAAAAGGAGTTTG
ACAAGAAATATAACCCGACATGGCATTGCATCGTGGGCAGAAATTTCGGA
TCCTACGTGACACATGAGACAAAACATTTCATATATTTCTACCTGGGGCA
AGTGGCTATTCTCCTGTTCAAGTCAGGCTATCGTTTGAATTATGTCAGAT
GGAATCGTTTTAATGTACAGAAGGAGGGCACAGCAGGCCATTTTGCGGCA
ACGGGTCTACGAGGCGACCGCTCGGGGAAGATAGTTGGGCTTTATTTAAA
GTGTGCTCATCCCGGAAAGAAAATGGAACCGAGGACAGTCGGAGTAAGAA
CATTGCTAGCTTGTTATCGGAAACCCAGAGGGGTGAGAGGCGTGCATCAT
GTTGCATCCGAGGCGGTAGGCATTGCACCCCGCTTTGGTTTCAAGAAGTT
GACTTATGACCCGCGAAACAAATAG
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protein sequence of rna3871

>rna3871-protein ID=rna3871-protein|Name=rna3871|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MKEEGGGIRNQMEQFGSYWHNATLSGTRNRHSAALVLFFGFCMMCSHLSL
MLSSQAHGPPLLLNRHSYHTHTDDQIMGSNTLASTMTPEMAVAMVCMAMV
LTFYPPSRKVISAAGFLVKGMLECADEYNSVYIDDEDHH
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mRNA from alignment at CM002462.1:285356..287332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3871 ID=rna3871|Name=rna3871|organism=Nannochloropsis gaditana|type=mRNA|length=1977bp|location=Sequence derived from alignment at CM002462.1:285356..287332- (Nannochloropsis gaditana)
TCTTCCTTCGTGCCTTTTGGAGAGACATGGTTGGGATTGAGATGATTGGC
GCGACGAATGGTCGTTCGTGGGTGTCTTTGATCGCAATTTACCGTGCCCT
TTACCTGCACAGTACCTGCAAGCTGTGCGGTGCTGCGACCACTCCGGTCA
TTCGGCTCCTTTGAAATGAAAGAGGAGGGGGGGGGCATAAGAAATCAGAT
GGAGCAGTTTGGAAGTTACTGGCACAACGCCACCTTGTCGGGAACGCGAA
ATAGACACTCGGCAGCACTTGTGCTGTTTTTTGGTTTTTGCATGATGTGT
TCACATCTCTCTCTCATGCTAAGCTCCCAGGCCCACGGTCCCCCTCTTCT
CTTGAATCGCCACAGTTACCATACACACACCGACGATCAAATCATGGGAT
CAAACACGCTCGCCTCGACAATGACTCCTGAAATGGCTGTAGCTATGGTG
TGCATGGCTATGGTTCTCACCTTTTACCCGCCTTCACGCAAGGTAATTTC
TGCTGCAGGCTTCCTTGTCAAGGGCATGTTGGAATGCGCTGATGAGTACA
ACTCGGTGTACATCGACGACGAAGACCATCACTAGGAGGATCCAAAGCAA
AAGATGATGATGACGGTAACTGGGACGACGGGTTCAATTTTGGGGCGTGG
GAAGGGGGATACTCTATGGGAAAAGGTGCGTGGGATTCTTGTCAATCCTG
TGCTTTGGCTGCTACCTGGAGCTGTTTGTCACGGACACGACGAAAGTGGC
AGTAGAAGAGGAGAGACAAAGGTTGGGGGAATCAGCAGCTGGCGAGGAGC
GATTCAAAGCATGAGGAGGAGCGTGAGATGGATCGTGGTGGAGTGGGAGG
GACCGGCCGGTGGGAAGGCACCGAATTGTGAGTGGCAAGGAGTTATTGGA
GTGCTTTGTGGACTCTGTACAGATTAGCAAGCAGGAGAGGAGGTGTAGGT
CGAGATGGTGACCAATGTAGGGCTCAACCATAGGCTTCGGAAGAACGCTT
CGTCACAGCCAGCGCACGTGAGAGGAAGCTGCGCGGAAGGAAGGAAAGGC
TTGCAGGAGGAAATAGTGAATTAGGTGGGCTACAGGGAGGCATCTGGAAG
GTCTAGCCGAGGTTCAAGCGAGAAGACGGAGCGAGGAATAATCAAGCGGA
GGACCTGGGTGTTGACCGCGTGCTGGAGGGGTAAGGGGCAGGGAGGTGCG
CTTCAGGGAAGGATGAAGGAAAGCTAGGTAGCAAAGGAAAAGGAACCCAG
TGCTCAGCGGCGTAATCGCTTGAAAAATTACTCTGTAAGTATAAAACTGT
TTCTGACGAAGGGGGGGGGGCGTGAGGGAGTGCAGGCAGCCAAGGAGGTG
TCGGATCCCATATGTGGTGGGACGTCATGAAGTGGAATCATCTCGTCGAT
TCCTCGGGATATTTTTGGGAGTGGCGAGCGCAAGGAAAGATTTTTACGGT
GGGTGCGATGAGAGCGTGGGGGTCAGGCAGATAGTCTGTGTGCGGGAGGG
GGAGCGTAAGGCGAGAAGACAGGGTGGAGGTCACAGGCATAGCGAATTTT
GGCACCGCGAGTGCCGGCAGACGACGGGATGGATGCACGCGATGAGGGCC
TAAGGCTAGTGGTGGGACAACTTGGGTTCGAGAGCCTAGACAGGGTGATT
GTGGAACTGAAAGGCAGCTGGACGAAAGGACTTAGCACCGGAGGCTCCCC
TTTATGACGGGGAATCGGTACCTTTGTTCGCGCTCCAGTACTGAATACTC
GGAGGAAGGGAAAGGAAAAGCAAAAACATCATAATTCATGCGATTTTGGG
GGGGGGAAGGTGAGACTGCGCCCGGTCGCGTACTGAGCACGAACATCTTT
TGACAGGTTTGAGGAGAGGAAGAAAACGATGGCACGGAAGGGGATGCAGA
GGATCAATTCCTTGTGTTGGGGTCGGTGATGGAAGGGAGACTTGATGAGC
AGAAGAAGAAACCATGACCACGGGGAA
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Coding sequence (CDS) from alignment at CM002462.1:285356..287332-

>rna3871 ID=rna3871|Name=rna3871|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002462.1:285356..287332- (Nannochloropsis gaditana)
ATGAAAGAGGAGGGGGGGGGCATAAGAAATCAGATGGAGCAGTTTGGAAG
TTACTGGCACAACGCCACCTTGTCGGGAACGCGAAATAGACACTCGGCAG
CACTTGTGCTGTTTTTTGGTTTTTGCATGATGTGTTCACATCTCTCTCTC
ATGCTAAGCTCCCAGGCCCACGGTCCCCCTCTTCTCTTGAATCGCCACAG
TTACCATACACACACCGACGATCAAATCATGGGATCAAACACGCTCGCCT
CGACAATGACTCCTGAAATGGCTGTAGCTATGGTGTGCATGGCTATGGTT
CTCACCTTTTACCCGCCTTCACGCAAGGTAATTTCTGCTGCAGGCTTCCT
TGTCAAGGGCATGTTGGAATGCGCTGATGAGTACAACTCGGTGTACATCG
ACGACGAAGACCATCACTAG
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Synonyms
Publications