rna3864, rna3864 (mRNA) Nannochloropsis gaditana

Overview
Namerna3864
Unique Namerna3864
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1342
Alignment locationCM002462.1:272647..273292 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g42.2786.mrna
Orig protein idgnl|cribi|Naga_100018g42.2786
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:272647..273292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g42gene3718Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26806.1cds3855Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3864rna3864-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3864 ID=rna3864|Name=rna3864|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp
AATGACTTGGCGTGAGTTTTTGGACAATATCGTGGCGTATGAATGAAGTG
GGGCGTTCCCACGTGGGTCAGTGTTTTTTGGCAAAGTAATTAATTATTGG
TTGGGAGGGCAGTGACTATGCTCGGGCACTCAGCACACCAGATATCTTGG
TATCCCGTGACGACTCTTGAGTTTCATGATCCTTTTACTACTTTTGCAAA
AAACACAGAGGCAGCATGAATGCAGCCAAGAAGTTTGCCGAGAACCTGGG
TAGCAAAATTCCCAAGGGTGCTGGCATGGGGGGTGGCGCGGGTGGCGGGG
GTGGAGGGGGTGGCCCCGGGGGCATGTCTCCAGCAGGACCGCTGGGAGCC
TTGCTAGGTGTGACGGGCATCCTTTACGCCGGGTACAATAGTTTTTACAC
GGTGGAGGGTGGGCACCGAGCTCTGTTGTTCAACAGATTAATCGGTGTGA
AAGAAGAAGTGTACATGGAGGGAATGCATTTTATGATTCCCTGGTTCGAC
ATGCCCATCATTTACGACATCCGCCCCAAGCCCCGGATGATCCAGTCCTT
GACAGGAAGCAAAGACATGCAAATGGTCAACATCACCATCCGCGTTTTGT
CTAAGCCCGACTCGGCTCAACTCCGCTGGATCTTCCGCACCTTGGGTCGC
GACTACGACGAGCGTGTCCTCCCTTCCATCGTCAACGAGGTCTCCAAGGC
CGTGGTGGCCAAGTACAACGCCGCGGAGCTCTTGACGAAGCGTGAGATGG
TCTCCACCCAAATCCGGTTGCAGTTGGAGAAGCGTGCGAAGGAGTTTCGG
ATCGTCCTGGACGACGTGTCGATCACCCACTTGACCTTCTCCCGGGAGTA
CACGAACGCGGTCGAGGCCAAGCAAGTTGCTCAACAGGAAGCCGAGCGCG
CGAAATATGTGGTAATGAAAGCGAACCAAGAAAAGGAAGCCATCATTATC
AAAGCGGAGGGAGAGGCCCAATCCGCTGCTCTGGTGGGTAAGGCCATTCG
AGAGAATCCTGCTTTTATCAAGCTGCGCAAAATCGACGCAGCCAGGGACA
TTGCGAATGTCGTGTCCTCTTCGGGTCAGAAGGTCTATCTGTCTGCGGAC
TCCCTCTTGTTGAATATGTACTCGGGCGACGAAGAGAAGTCTGGAAAGAA
GCGGTAGGCATGCCACACGGGTAGAGAGGAGTGCGACGCGGGAAACTAAA
CAGGAAGAGGCGCAAGGAGAAAAAGACTTGGTGGGAAAGTGTACTCGTTG
CTCTTTCAGGAAGGCAGGATGCATCGACAAAAGTTAAAGAAATCCAAACC
CTCGACCAAAATTGACTGCAATTGAAGCAAGTGCCTTGTGAG
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protein sequence of rna3864

>rna3864-protein ID=rna3864-protein|Name=rna3864|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MSCPSRNCCSRLTPLPSRTWAKRKGSDAKDLSCRIFPAPPRAAAAMAQAT
VRYLAGLGRLRKGHAWRMLCAGLHPCRADEGVEGIIDCCVVASEPMGLIL
EACSGTDTSQWNDLEPCFLSYLL
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mRNA from alignment at CM002462.1:272647..273292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3864 ID=rna3864|Name=rna3864|organism=Nannochloropsis gaditana|type=mRNA|length=646bp|location=Sequence derived from alignment at CM002462.1:272647..273292- (Nannochloropsis gaditana)
GATGCCGACAAAGATGCCATTTCTGGCACTTGACCCATGTCTTGTCCAAG
CAGAAATTGCTGCAGTCGTCTTACTCCCCTTCCTTCCCGGACATGGGCGA
AAAGGAAAGGCTCCGACGCTAAAGACCTTTCCTGCAGAATTTTTCCTGCC
CCTCCGAGAGCGGCGGCAGCGATGGCTCAAGCGACGGTGCGGTACCTTGC
TGGCCTCGGGAGGCTCCGAAAAGGACACGCCTGGCGCATGCTGTGTGCAG
GATTGCACCCTTGCAGGGCTGATGAGGGCGTTGAGGGCATCATAGACTGC
TGTGTGGTCGCATCCGAGCCAATGGGGTTGATCTTGGAGGCGTGTTCGGG
AACAGACACGTCCCAGTGGAATGATCTTGAGCCTTGCTTCCTCTCATATC
TTTTGTAGGAGGCCACTATCGGTAGAGATTCCCATAGGGCTCATCACAAA
AGGTTTGGTAAGTTTGATCCAAGTTGTTTTTGTGTCAGGGGAGTGAATTT
TGGTTTGACAGATTGTAGGCCGCCTGCGCCCCCACCGCGTGAAGGACCTT
TGGTGGAGCAATCCCCACACCCTAGCTATGCCTTTCCCCAACGTGTTGTG
GAAGAAAAAAAGTAAAATTAAACAACTATACAACGCTCTCACAAGG
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Coding sequence (CDS) from alignment at CM002462.1:272647..273292-

>rna3864 ID=rna3864|Name=rna3864|organism=Nannochloropsis gaditana|type=CDS|length=372bp|location=Sequence derived from alignment at CM002462.1:272647..273292- (Nannochloropsis gaditana)
ATGTCTTGTCCAAGCAGAAATTGCTGCAGTCGTCTTACTCCCCTTCCTTC
CCGGACATGGGCGAAAAGGAAAGGCTCCGACGCTAAAGACCTTTCCTGCA
GAATTTTTCCTGCCCCTCCGAGAGCGGCGGCAGCGATGGCTCAAGCGACG
GTGCGGTACCTTGCTGGCCTCGGGAGGCTCCGAAAAGGACACGCCTGGCG
CATGCTGTGTGCAGGATTGCACCCTTGCAGGGCTGATGAGGGCGTTGAGG
GCATCATAGACTGCTGTGTGGTCGCATCCGAGCCAATGGGGTTGATCTTG
GAGGCGTGTTCGGGAACAGACACGTCCCAGTGGAATGATCTTGAGCCTTG
CTTCCTCTCATATCTTTTGTAG
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Synonyms
Publications