rna3848, rna3848 (mRNA) Nannochloropsis gaditana

Overview
Namerna3848
Unique Namerna3848
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002462.1:203652..204311 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g61.2813.mrna
Orig protein idgnl|cribi|Naga_100018g61.2813
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:203652..204311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g61gene3703Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3848rna3848-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26833.1cds3839Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3848 ID=rna3848|Name=rna3848|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGGCTTGGCGTCAATGTCAAACTTTCATTCTGCCACGGGCTTCGCACAT
CAATAACGCAGAACTACAGAATAAGTGCGTCGGTCTCAACATGCCGCATC
TTTCTGTGCCAGCATCAGCCACAAGTGCTGCGGTTCTCCACCTTTACCGG
CGTATTATCAAGAACGCCAAGGTGTTTCCTAGTAAAGGTCGCGATCGCAT
GCTCAAGGAAATCAGGGAAGAGTTTCGCCTCAATGCCAAAGAAACCGACC
CGGAGAAGGTTAAGCACCACAGGAGTATGGCAATCCAGGGACTGAGTCAG
TTGCAGGCCTACACGGGATTGGAGGACTCGGACATGGACTGGAGCGTCAC
AATGGAGCAAGCGCCATTGGGGGGGCTATCGGAGGAAAAAGTGGAGGAGA
AATTGCGTCGCGTCCCACAAATGGCAATGACCTCCGGGAAGGACGTCGCA
GACGAAACAGGGCAAGAAAACGATGACAGAAGGAAGTAG
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protein sequence of rna3848

>rna3848-protein ID=rna3848-protein|Name=rna3848|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MFEVHGLWPVVHLGIAGAIFALFLVCLVQLWYRYFRQRGVGSEIPVQYTE
LPQRHGHARFDLSDARCDEGHFIDEVGEDEEYGEDIFDALYGDEEEEEFR
GGAKRRPDDGRRLFGGRRDQGIFSSFPTPRPPRRNAATTVPTRGDVDCAD
VSETKSVAKYTEKSRPEPARDHGGLSQGGGKEKRGEEEHDTSGRISERNG
VEGEKGDLEAALVEQEGSV
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mRNA from alignment at CM002462.1:203652..204311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3848 ID=rna3848|Name=rna3848|organism=Nannochloropsis gaditana|type=mRNA|length=660bp|location=Sequence derived from alignment at CM002462.1:203652..204311+ (Nannochloropsis gaditana)
ATGTTTGAAGTGCATGGCTTGTGGCCGGTTGTACATTTGGGTATAGCAGG
CGCCAtcttcgcccttttccttgtaTGTCTTGTGCAATTGTGGTATCGAT
ACTTCCGACAGCGCGGCGTGGGAAGCGAAATTCCGGTCCAGTACACAGAA
CTCCCGCAGAGACATGGTCATGCACGATTTGATCTGAGCGATGCACGATG
TGACGAAGGCCATTTTATCGACGAAGTGGGAGAAGATGAGGAATACGGGG
AAGACATCTTTGATGCCCTGtacggggacgaggaggaggaggaatttcGT
GGGGGGGCAAAAAGGAGGCCAGACGATGGACGAAGACTGttcggagggag
aagagatcAAGGCATTTTTTCGTCATTCCCTACCCCGCGTCCACCACGAA
GAAATGCAGCAACCACAGTGCCGACGAGAGGCGATGTGGACTGTGCGGAC
GTGTCAGAGACGAAATCGGTCGCGAAATACACCGAAAAGTCCCGTCCAGA
ACCCGCAAGGGACCACGGAGGACTttctcaaggaggagggaaggagaagc
gtggggaagaggagcatgACACGTCAGGCAGGATCTCGGAAAGGAatggg
gtggaaggggaaaagggggaccTGGAGGCCGCACTAGtggagcaagaagg
gagTGTATAG
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Coding sequence (CDS) from alignment at CM002462.1:203652..204311+

>rna3848 ID=rna3848|Name=rna3848|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002462.1:203652..204311+ (Nannochloropsis gaditana)
ATGTTTGAAGTGCATGGCTTGTGGCCGGTTGTACATTTGGGTATAGCAGG
CGCCAtcttcgcccttttccttgtaTGTCTTGTGCAATTGTGGTATCGAT
ACTTCCGACAGCGCGGCGTGGGAAGCGAAATTCCGGTCCAGTACACAGAA
CTCCCGCAGAGACATGGTCATGCACGATTTGATCTGAGCGATGCACGATG
TGACGAAGGCCATTTTATCGACGAAGTGGGAGAAGATGAGGAATACGGGG
AAGACATCTTTGATGCCCTGtacggggacgaggaggaggaggaatttcGT
GGGGGGGCAAAAAGGAGGCCAGACGATGGACGAAGACTGttcggagggag
aagagatcAAGGCATTTTTTCGTCATTCCCTACCCCGCGTCCACCACGAA
GAAATGCAGCAACCACAGTGCCGACGAGAGGCGATGTGGACTGTGCGGAC
GTGTCAGAGACGAAATCGGTCGCGAAATACACCGAAAAGTCCCGTCCAGA
ACCCGCAAGGGACCACGGAGGACTttctcaaggaggagggaaggagaagc
gtggggaagaggagcatgACACGTCAGGCAGGATCTCGGAAAGGAatggg
gtggaaggggaaaagggggaccTGGAGGCCGCACTAGtggagcaagaagg
gagTGTATAG
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Synonyms
Publications