rna3843, rna3843 (mRNA) Nannochloropsis gaditana

Overview
Namerna3843
Unique Namerna3843
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length810
Alignment locationCM002462.1:197978..198842 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g65.2780.mrna
Orig protein idgnl|cribi|Naga_100018g65.2780
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:197978..198842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g65gene3699Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3843rna3843-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26800.1cds3834Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3843 ID=rna3843|Name=rna3843|organism=Nannochloropsis gaditana|type=mRNA|length=810bp
ATGCACCGACTGGTCGCCCCCTTGGTGGTGGATTCGGAAACCGCCACGTT
GCTCTGTCAAGACATTTTACGGGCATCCTCTAGGACGGCCTCAGGAGGCG
ATTCCTATGTTATTACCACGAGCCTTCTGGTACGGCCAGGCAACCTTCTG
ACTCCCGCAATGGCCGCCTCTTCCATCCCCATTTCTATCCATATCGGTGC
GGAGGAAGGGGTTGTCGACATTGCTGCCTACAATAGCTACGTATTGCACT
GGGACATGCTGGAGGACGGAGGGGGGGGAGCCGGGAAGGAGGGGAGGAAG
GAGGCCAGAAATCCAAGTGAGTGGGACCTTCCAATGTGGCAATCCTATAT
AGACGGAGGACGGGAAGGGACAAGCACGAGGAAAAAAATGGGAGGGTTCT
TGACGCAGATGCTGCAGGCGTCGGGGGGTAACGGTTTTCAACGGCATGTT
CATCCGCGCCGTTATTTTCAGGACCGTGGGGAAGGGCCTGGGGAGGGTAT
AGGGACGAGGGAGGAATGCACAGGAACTGAAGATGCTGAAAAGGAAAAGG
AGCAGACAGGCGTGGGCTCCAAGAAGGAAAGCGATCAAGATAGGCTTGGA
GAGAAAGGGGAGGGAAGAGGGGAAGGGGGCGGAGGAAGGGTGAAGGGAGA
GGAGGAGGAGGAGGAGGCGGAAGCGGGGGAGCGGATCGTCCTCCAGACTC
TGTTGGAGGTGAGACTCGACGTTTTGACACGCAACAGCAGCAGAAAGATG
CGTGTATGGTGCCAGGAAACCGAAAAAGTACCCGGATCTTTCTTGCGCCC
TGGTACATGA
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protein sequence of rna3843

>rna3843-protein ID=rna3843-protein|Name=rna3843|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MAFGGRGGLLPHWSSPRSSHPREEGGGGTSEPSHGSALVLPPSLCRFLLL
LRRLVHPLFGEKGQSPLFQSMPQSLPPPGGLGSCGGGGEGEGKGEREEPG
GRTSTVADGAWREGRERGREEGRDRARSDGLAGCMQRGRMLVNVEDSKSG
ASTGMCFHPFYYIACANGTLNLVKERRGGRWRKAVRGSPHDQHLRASRLG
VCEYGRTARGPKPPMPGVAPRM
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mRNA from alignment at CM002462.1:197978..198842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3843 ID=rna3843|Name=rna3843|organism=Nannochloropsis gaditana|type=mRNA|length=865bp|location=Sequence derived from alignment at CM002462.1:197978..198842+ (Nannochloropsis gaditana)
ATGGCGGTCAGCCTGCCGGGCTTCAGACCCTGCGGGATCCAGCTCCCGTG
GAGcgggtcctccctcctctcctccctccctccctccctccctccctccc
tccctccctccctccctccccccccacccacccgcCCACGGGCACGGACA
GCAGCCTTCACCTCGCGGTGTCGGCCTTACCGTCGTACAACAGCAATAGT
agtttggagggagaggcggcttGCTTCCTCACTGGAGCTCACCCCGGTCC
TCGCACCcccgagaagaaggaggtggaggcacgTCGGAGCCCTCCCACGG
ATcagcccttgtcctccccccctccctctgccgcttcctcctacTGTTGC
GGCGGTTGGTGCATCCTCTCTTTGGAGAGAAAGGCCAAAGCCCTTTATTT
CAATCGATGCCGCAGtcgttgcccccccccggagggTTGGGAAgttgtgg
gggagggggagagggagagggaaagggagaaagagaagagccTGGTGGTC
GGACCAGCACCGTCGCTGATGgcgcatggagggaagggagggagcggggg
agggaggaggggagggataggGCGCGGTCAGATGGTTTAGCTGGCTGCAT
GCAGAGGGGACGAATGCTTGTAAATGTGGAGGACTCAAAATCCGGGGCAA
GCACCGGCATGtgcttccatcccttctATTATATAGCATGTGCGAACGGC
ACATTGAATCTGGTGAAGGaaaggcgcggagggaggtggaggaaggcggt
gcGAGGAAGTCCACACGATCAGCATCTGAGGGCTTCCAGGCTGGGTGTGT
GCGAGTACGGAAGAACAGCGAGAGGTCCGAAGCCTCCAATGCCCGGGGTG
GCGCCGAGAATGTAA
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Coding sequence (CDS) from alignment at CM002462.1:197978..198842+

>rna3843 ID=rna3843|Name=rna3843|organism=Nannochloropsis gaditana|type=CDS|length=1338bp|location=Sequence derived from alignment at CM002462.1:197978..198842+ (Nannochloropsis gaditana)
ATGGCGtttggagggagaggcggcttGCTTCCTCACTGGAGCTCACCCCG
GTCCTCGCACCcccgagaagaaggaggtggaggcacgTCGGAGCCCTCCC
ACGGATcagcccttgtcctccccccctccctctgccgcttcctcctacTG
TTGCGGCGGTTGGTGCATCCTCTCTTTGGAGAGAAAGGCCAAAGCCCTTT
ATTTCAATCGATGCCGCAGtcgttgcccccccccggagggTTGGGAAgtt
gtgggggagggggagagggagagggaaagggagaaagagaagagccTGGT
GGTCGGACCAGCACCGTCGCTGATGgcgcatggagggaagggagggagcg
ggggagggaggaggggagggataggGCGCGGTCAGATGGTTTAGCTGGCT
GCATGCAGAGGGGACGAATGCTTGTAAATGTGGAGGACTCAAAATCCGGG
GCAAGCACCGGCATGtgcttccatcccttctATTATATAGCATGTGCGAA
CGGCACATTGAATCTGGTGAAGGaaaggcgcggagggaggtggaggaagg
cggtgcGAGGAAGTCCACACGATCAGCATCTGAGGGCTTCCAGGCTGGGT
GTGTGCGAGTACGGAAGAACAGCGAGAGGTCCGAAGCCTCCAATGCCCGG
GGTGGCGCCGAGAATGTAAATGGCGtttggagggagaggcggcttGCTTC
CTCACTGGAGCTCACCCCGGTCCTCGCACCcccgagaagaaggaggtgga
ggcacgTCGGAGCCCTCCCACGGATcagcccttgtcctccccccctccct
ctgccgcttcctcctacTGTTGCGGCGGTTGGTGCATCCTCTCTTTGGAG
AGAAAGGCCAAAGCCCTTTATTTCAATCGATGCCGCAGtcgttgcccccc
cccggagggTTGGGAAgttgtgggggagggggagagggagagggaaaggg
agaaagagaagagccTGGTGGTCGGACCAGCACCGTCGCTGATGgcgcat
ggagggaagggagggagcgggggagggaggaggggagggataggGCGCGG
TCAGATGGTTTAGCTGGCTGCATGCAGAGGGGACGAATGCTTGTAAATGT
GGAGGACTCAAAATCCGGGGCAAGCACCGGCATGtgcttccatcccttct
ATTATATAGCATGTGCGAACGGCACATTGAATCTGGTGAAGGaaaggcgc
ggagggaggtggaggaaggcggtgcGAGGAAGTCCACACGATCAGCATCT
GAGGGCTTCCAGGCTGGGTGTGTGCGAGTACGGAAGAACAGCGAGAGGTC
CGAAGCCTCCAATGCCCGGGGTGGCGCCGAGAATGTAA
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Synonyms
Publications