rna3835, rna3835 (mRNA) Nannochloropsis gaditana

Overview
Namerna3835
Unique Namerna3835
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2305
Alignment locationCM002462.1:173780..175271 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100097g20.3738.mrna
Orig protein idgnl|cribi|Naga_100097g20.3738
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:173780..175271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100097g20gene3691Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26847.1cds3826Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3835rna3835-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3835 ID=rna3835|Name=rna3835|organism=Nannochloropsis gaditana|type=mRNA|length=2305bp
GAAGGTTACAGGGTGGCGTCGGGGGCTTGAAGGTCAAAAATATAACCCCA
ACTTTGTTGAAGTGTCGCGCGTTTACGTTCAATTGCACAAAATTTTGACG
TGTGGAGGTAAATGTAGGCATCAGGAGCGGTGTTGTGCCCCGCCTCAGCT
TACTAGGGAGGCCTGTCAAGGAAGAGACGAGCGACTTCAACAAGAGGGTG
GCTCAAGGAGACAGATGCCAGGGTGACCATCTTGGGGCAAATAAACACCG
TATGAAACCTCATAGACTTACTGAACACTTTCACAGCCCTGCTTATAACC
GTCAGCCCTTTAAGGACGCTCCGCACTGCGGACGCTTCTTTCAACCATGC
TTTCTACCACGACCAAATTGATGCTCCGGCGTTCTGCCGTTGGGCGCCGT
GACACCTCCCTCTGGTCCTCCGCGGGAAAAATAACAGTCCGCTCCCTAGC
CTCGGACAGCAAGGATGTCAGTAACGGGAGTAGAGGCAGAAGCAAAACAT
CCTTTTCGTCCACCGTTTCCCCGTCCTGGCCCCCCAGCCGGCAGGAAATG
GCGCGCATGTTCGAGGCGGGTTACGAGAGTTACGAGAAGAATGAGAGGAA
AGGCATGGGTCGAAGTGCGATGGCCTGGAAGGAAGACGGACACGACGAGG
CGGGGGGCCAGGAAGGGAGCCAGGGCGGGGCCGGGGGGGGATCCCTCTCT
CCGCACCATGATGGCTACGATGCGACGGAAATGACCCGGCAGCGGATGGA
ATTGTCGAAAGCCACGACAGCCGCTACCCTTGCACGCACGGACGCCAAGT
ACTTGAACGAGGAGGAGAGGAAGGCCCACGATGCCGAAATGAAGGCCCTA
CATGCCGGGATCGTCGCAGGCGGGGGGGGGGAGGACCCTGACGACTCCCC
ATCGGCCACGGGGGGGGGCAATCATGGCTTGGGCGGTAGAGGAAGTGGTA
GAGAAGGGGAGGGGACGAAAGGCGGGGCCGTGGCGAAGGCCCAGGCTGGC
AGCAATTCCGATCCCGAGAAGAGCTTGGAAAAATGGACGTGGGCCCGACC
CTCACGTCTCGCACAGGAGGAGGCGCAAGGCAGGAAGACGTCGCGGGCCG
GGGCGATTCCCGTGTTGCCTCGGACTTTGTTGAGGCCGGCCGAGGTGGTG
GAGGCGTTGGTCGCTCTCGGGGGGGAGGACGTGGCCAGCGTGGATATCCG
TGGGAAAGGCAATTTCAACGCGGAGGCCATGATTTTCGCCTCGGGAAGGA
GCGGCGGGCATTTGCGTCGGATGGCCGACACGGTGGTCGGCGCCTTGAAA
GCCCGGGGCATAGAAGAGATGGAGGCGCCGGGGGTGACGGGGGCGGAGGG
ATATGACTGTGAGGATTGGATGATCGTGGACGGCGGGAACGTGATTGTGC
ATCTGATGGAGCCCTCCCAACGGGCGGCGCTGGGCCTGGAGGGGTTCTGG
GGAGAGGGGGAGGAAGGAAGGAAGGGAGGGAGGGTGGGCGACCTGGTGAT
GCCTGTGGCGGCGACGGCCTCGGAGGAGGCCTGGAGCCAAGCGCACGACG
CGCTCTTGGAGCGATACCCCGCGGACGAAGAGTACGCACCCGAGAGGGAG
GAAGAAGCCCGGCGGGAAAGGGAGCTGCGGCGGGTGTTAGGTCCGGGGGG
GAAAGGGATGGGGGAGCGGAGGCGGCGGCGGAAAGTCGTGGGCGGGGGCA
GATGAAGCACCGAGGGCGGAGGTGGAAAGGGATTGGAAGAGCGAAAAGCA
GGATGACGTGGGGGCGAGAAGGAGAAACAGGCTTGGGAAAGAGTGGCGCC
ACTAGGGGTCACAAAGATGCTCGTCAGGTGTTTGCACATTGAATTGCGTG
ATATTGTAAAGAGGATGCATGGGAAGACTGGTCCAAATTGCCACTGCTTT
GTTGATTGATATGCATGGGGGGGAGCCTCGAGCCTAGTCTCCGACTGTAG
CGCGCGTGCCGGAGGGGCCCTGGAGACAAGAGCATCAGGTTAAGAGAAAC
GCTGTATTTTTACAGGAAGCGCAGAACAACAGGATAGGAAAGGGGTTCCA
AGACGTGTGGTGAGAGTAGAGGTACAAGGGGAAGAATTCGCGTCGGTCGT
ACAGGCATGAGGAGAAATAGGGGGGAGGGATGGGGGATAAGTGAAAGCGA
GCTCTAGGAGGTCAGCGAGGATGCAACAGAAGGAAAACAAGCGCTTGGCA
GTCAGAATGAGACTTGAGTCAATCTTTCATTCCCCATGATGAGTGCTCTG
CAATTATCACTCCATTACCCACCCGGCATTCTTGGCGCTAGATTTCACAC
CGCCT
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protein sequence of rna3835

>rna3835-protein ID=rna3835-protein|Name=rna3835|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
GGREGAVGSARKSWGGYHRSVQCSSEERSPHAWLTMYLNSFQVDRASEAK
LLLIGWMTAVAVMGAGGVGMWHWITGCNRGLNKQLVTILDRARVVAPRLA
LSTSARSLGGRHVGTGGGEGRDRGEEREGNRRGALSLVGERSSSLGQSGR
PSMSGQPLMDAGPRHATPKSAPVVLKSVANQPLWEGQVGPRGNKAGKAVG
GGQGAWLVAHGERDGTRTGPGGERRAGLGLDSSPSSASSLPPDGTAAIPP
ASPLSSLGTEVTSKEGAREEDAMTQNTPRGAGNAEIIAGHTTAADPARRL
STSAGVKFQPPAFYGRVVEPDYERDMGQKTLERGLVKSGMVQEKRPSGTG
WARRKCWKDVYLVVDAGAVTVYRQRADSSVVLHRLPVAEVGTRKIVGGDK
QDAGMILTCGGESVELQCPAGEGEVDKWLSVLQWNAEVALRRA
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mRNA from alignment at CM002462.1:173780..175271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3835 ID=rna3835|Name=rna3835|organism=Nannochloropsis gaditana|type=mRNA|length=1492bp|location=Sequence derived from alignment at CM002462.1:173780..175271- (Nannochloropsis gaditana)
GGCGGGAGGGAAGGGGCGGTCGGAAGCGCCAGGAAGAGCTGGGGAGGCTA
TCATCGATCGGTACAATGTAGCAGCGAAGAACGCAGTCCTCATGCGTGGT
TGACAATGTATTTAAATTCTTTTCAAGTGGACCGGGCATCCGAAGCCAAG
CTCCTGCTGATCGGATGGATGACTGCCGTGGCCGTGATGGGTGCCGGGGG
GGTGGGGATGTGGCATTGGATCACAGGGTGCAATCGCGGGTTGAACAAGC
AATTAGTGACCATCTTAGATCGAGCACGGGTGGTAGCGCCACGTTTGGCA
TTATCCACCAGCGCCCGCAGCTTGGGAGGCCGGCACGTAGGGACGGGGGG
AGGGGAAGGGAGGGACCGGGGGGAAGAGAGGGAGGGTAACCGCCGGGGCG
CATTGAGCCTGGTGGGAGAGCGGTCGTCGTCTCTGGGACAAAGCGGGAGG
CCATCGATGTCTGGGCAGCCCTTGATGGATGCAGGGCCTCGGCACGCCAC
TCCAAAAAGCGCTCCCGTGGTCTTGAAATCGGTGGCGAACCAGCCATTGT
GGGAGGGGCAGGTCGGCCCGCGTGGGAACAAGGCGGGGAAGGCGGTGGGA
GGAGGACAAGGGGCCTGGTTGGTGGCCCACGGTGAGAGAGACGGGACGAG
GACAGGGCCCGGCGGGGAAAGACGGGCCGGCTTGGGCCTTGATTCCTCTC
CCTCCTCCGCTTCCTCCCTCCCGCCTGACGGCACGGCGGCGATCCCGCCC
GCCTCCCCTCTTTCCTCCCTGGGGACGGAGGTCACGAGCAAGGAGGGAGC
ACGGGAGGAGGATGCCATGACGCAGAATACTCCGAGGGGAGCAGGCAATG
CTGAAATAATCGCAGGCCATACAACGGCGGCCGATCCCGCCCGTCGTCTC
TCCACTTCTGCAGGGGTCAAATTCCAGCCTCCCGCATTCTACGGGCGCGT
GGTGGAGCCAGACTACGAGCGAGACATGGGGCAAAAGACACTGGAGCGGG
GACTAGTCAAAAGCGGGATGGTGCAAGAAAAACGGCCGTCGGGGACCGGT
TGGGCGCGTCGGAAATGTTGGAAAGACGTGTACCTGGTGGTGGACGCGGG
GGCGGTCACTGTGTACAGACAGCGAGCCGATTCGTCCGTGGTGCTTCACC
GGCTCCCCGTGGCGGAGGTGGGCACGCGAAAAATCGTAGGGGGGGACAAG
CAGGACGCTGGGATGATTTTAACCTGCGGAGGGGAGAGTGTGGAGCTGCA
GTGCCCCGCCGGAGAGGGAGAAGTCGACAAGTGGTTGTCTGTATTGCAAT
GGAACGCAGAGGTGGCATTGCGGCGGGCCTAGGTCCGGGGGGCTCAGGGC
AGGGAAGGTGAGAGGGATGTTTCGCGACATGGGGAAGGGAGGGAGGCGGT
GTGAAATCTAGCGCCAAGAATGCCGGGTGGGTAATGGAGTGATAATTGCA
GAGCACTCATCATGGGGAATGAAAGATTGACTCAAGTCTCAT
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Coding sequence (CDS) from alignment at CM002462.1:173780..175271-

>rna3835 ID=rna3835|Name=rna3835|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002462.1:173780..175271- (Nannochloropsis gaditana)
GGCGGGAGGGAAGGGGCGGTCGGAAGCGCCAGGAAGAGCTGGGGAGGCTA
TCATCGATCGGTACAATGTAGCAGCGAAGAACGCAGTCCTCATGCGTGGT
TGACAATGTATTTAAATTCTTTTCAAGTGGACCGGGCATCCGAAGCCAAG
CTCCTGCTGATCGGATGGATGACTGCCGTGGCCGTGATGGGTGCCGGGGG
GGTGGGGATGTGGCATTGGATCACAGGGTGCAATCGCGGGTTGAACAAGC
AATTAGTGACCATCTTAGATCGAGCACGGGTGGTAGCGCCACGTTTGGCA
TTATCCACCAGCGCCCGCAGCTTGGGAGGCCGGCACGTAGGGACGGGGGG
AGGGGAAGGGAGGGACCGGGGGGAAGAGAGGGAGGGTAACCGCCGGGGCG
CATTGAGCCTGGTGGGAGAGCGGTCGTCGTCTCTGGGACAAAGCGGGAGG
CCATCGATGTCTGGGCAGCCCTTGATGGATGCAGGGCCTCGGCACGCCAC
TCCAAAAAGCGCTCCCGTGGTCTTGAAATCGGTGGCGAACCAGCCATTGT
GGGAGGGGCAGGTCGGCCCGCGTGGGAACAAGGCGGGGAAGGCGGTGGGA
GGAGGACAAGGGGCCTGGTTGGTGGCCCACGGTGAGAGAGACGGGACGAG
GACAGGGCCCGGCGGGGAAAGACGGGCCGGCTTGGGCCTTGATTCCTCTC
CCTCCTCCGCTTCCTCCCTCCCGCCTGACGGCACGGCGGCGATCCCGCCC
GCCTCCCCTCTTTCCTCCCTGGGGACGGAGGTCACGAGCAAGGAGGGAGC
ACGGGAGGAGGATGCCATGACGCAGAATACTCCGAGGGGAGCAGGCAATG
CTGAAATAATCGCAGGCCATACAACGGCGGCCGATCCCGCCCGTCGTCTC
TCCACTTCTGCAGGGGTCAAATTCCAGCCTCCCGCATTCTACGGGCGCGT
GGTGGAGCCAGACTACGAGCGAGACATGGGGCAAAAGACACTGGAGCGGG
GACTAGTCAAAAGCGGGATGGTGCAAGAAAAACGGCCGTCGGGGACCGGT
TGGGCGCGTCGGAAATGTTGGAAAGACGTGTACCTGGTGGTGGACGCGGG
GGCGGTCACTGTGTACAGACAGCGAGCCGATTCGTCCGTGGTGCTTCACC
GGCTCCCCGTGGCGGAGGTGGGCACGCGAAAAATCGTAGGGGGGGACAAG
CAGGACGCTGGGATGATTTTAACCTGCGGAGGGGAGAGTGTGGAGCTGCA
GTGCCCCGCCGGAGAGGGAGAAGTCGACAAGTGGTTGTCTGTATTGCAAT
GGAACGCAGAGGTGGCATTGCGGCGGGCCTAG
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Synonyms
Publications