rna3832, rna3832 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3832
Unique Name	rna3832
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1275
Alignment location	CM002462.1:165621..167504 +

Link to JBrowse

Properties


Property Name	Value
Product	Tetratricopeptide-like helical
Orig transcript id	gnl\|cribi\|Naga_100097g17.3751.mrna
Orig protein id	gnl\|cribi\|Naga_100097g17.3751
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:165621..167504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100097g17	gene3688	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3832	rna3832-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26860.1	cds3823	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:165621..167504+
coding sequence from alignment at CM002462.1:165621..167504+

mRNA sequence

>rna3832 ID=rna3832|Name=rna3832|organism=Nannochloropsis gaditana|type=mRNA|length=1275bp
ATGGCTACCTCATACGCAAACCTCCCCGCCTGGCGCAACCAAATGACTTT
CTTGCCCGGGAACATGCAACTGACGAAGCCAGAAGACATGCCGAAGGAAA
AGACTTGGCGGTATAAGGGACATGCTGTGCATGTGGACAGTTGCGGTACT
CCAGTCGGCTCTCCTGTCACACTTGTTCTACTTCACGGGGTGGGGACCAA
TGCTCGACAAATGTCCTTACTTGTCGGTCTGCCCCTGGCCCGCAAGTATG
GTTTTCACTCTCTCGCTTTGGATTGTCCTGGGTACGGCGTGACGCAGGTG
GCGCCAAAGAGCAAGGTGACCTACAGTGATTGGGTGGACCTCGTCGACGC
CTTTGTAGATGCCCAGACGAGGAGACAGTTAAACGAGGGGAGAGGAACAC
GGCCCATCGTCCTCTTCGGATTGAGCGCGGGGGGCATGTTGGCTTACCAG
GTAGCAGCACGCAACGCGAATGTAAAAGGTGTCATCGGCATGACTTTCCT
CGACCAACGCGTGCAAGAGGTGCGTGATACCACCGCCCACGATTTGGTGG
GCTCGCGCGTCGGAGTGCCTCTGGCAGGCGTGCTTAGAGGGACACCGTTA
GGAGGCATACGGCTGCCAATGCCCTTGACCAGTAAAATGCGGGCCTTGGT
CAACGATCAAAAAGCGCTCCGAGCCTTCATTACTGACCGTTCTTCGGCGG
GAAACTGGGTCTCTATGCGTTTTCTCGCGGACTACATGACCTATGCCCCT
GCCAAGGAACCGGAGGACTTTGAGACCTGTCCGATTTTATTGACCCAACC
AGAAGAAGATCGATGGACACCGCTCCGCTTGAGTGAAATTTTTCTGGATC
GAATCCGCAAGGTCCCTGTCAAACGGGTTACGCTAGAGAAAGCCGGACAC
TACCCTCTGGAGCAACCCGGAATCGACCAGCTGCACAAGGCGATCGCGGA
ATTTATTGAGACCTTTTGGGATGTGTCGGCAAAACGAGCCGGAAATAGAA
GAAATAATGCGAGACGTCTGAAAATTAGGAACGAAGGAACGAACACCCTA
CATCCGCGTATCAGGACAATCGGGACAAAGTTTATGGCGTTAATGGAACC
AAGAGGCTCTGTCAGGAAGGTAAAAAAATTAATTTATGTTCTACGTGCTT
TCGAGACAGACAATTACACTCACATGTGTTGTAATGAGGGCGTTTTGGTG
TCCTTTGCGTGCGCCACTCACGAAGACGTAGCCCCGAGCGTCCAGTGCAA
CATTTCCCTGGCATATTTTTCATGA

protein sequence of rna3832

>rna3832-protein ID=rna3832-protein|Name=rna3832|organism=Nannochloropsis gaditana|type=polypeptide|length=627bp
MLWRCISKSRWLLPRISATSCLHALPKAATFSSFSRAPPLPSAQWPTQSE
MPTNGLDSAIFKTLWESALDAHARGRYAEALAKAKASIETAAEGEHGSLG
REHALRMAHHLTGVAYMQLGCVAQAVQSLEQAKDIAIRVSGAGGGDDAYT
DLGGVLNDLGVAKALAGDKKAAQKNVSRTLYMARRAYRPDEDLVSAACSN
LAEVMWMMDGEGGGEGEGIAQEAVELAEKAARLTDKMERLSLLRQSSAKE
EAEPVGGEDTEATPGRKGGSYLPPMPASDASIQAKSASTGVWALPVELLA
FHERSTRRRLILGRCLARAHREEEAAYYLFQALQDSRRSGLRCNPILYAQ
CLAAVGNMHLLSLLRRGLGTDLSHLAAAGCREDNEMTWDAQGLLVRALGV
LEPVLGKEHPEVVACHANLALFQPLARAEAVLADAMRAAGGEREDREGGG
GPGGEMESNSSKKVDGHREHEAVRSEEEGSGAAQSPLSSPPVAREMMRVL
EGNRQALNTLIIAVGRHKADRHCAVELVAAKQRRRAKGRQTADISLASTE
IPVGTDVGQGEGGCDGFGRGTTDGGIEEEEEEEPPPPLQVLWTLQGVVGV
GLQAWDVKAGGRGEKLGRILEEDPVEP

mRNA from alignment at CM002462.1:165621..167504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3832 ID=rna3832|Name=rna3832|organism=Nannochloropsis gaditana|type=mRNA|length=1884bp|location=Sequence derived from alignment at CM002462.1:165621..167504+ (Nannochloropsis gaditana)
ATGCTATGGCGGTGCATCAGTAAATCTAGGTGGTTACTTCCTCGGATCAG
TgctacctcctgcctccacgctTTACCAAAGGCTGCtactttctcctctt
tttcacgagctccgcctctgccatcTGCTCAATGGCCTACACAATCTGAA
ATGCCCACCAATGGGCTCGACTCAGCCATTTTTAAAACATTGTGGGAGAG
TGCACTTGATGCACACGCACGCGGGCGGTACGCGGAAGCCCTTGCAAAAG
CCAAAGCAAGCATTGAAACGGCCGCCGAGGGCGAGCATGGCAGCCTCGGG
CGCGAGCATGCTTTGCGAATGGCTCATCACCTAACTGGAGTGGCTTACAT
GCAACTAGGTTGTGTGGCACAGGCAGTTCAAAGCCTGGAACAAGCAAAGG
ACATCGCGATCAGGGTCAgtggggcaggtggaggggatgacgCGTACACA
GACTTGGGCGGGGTGCTTAATGACCTGGGGGTTGCAAAGGCATTGGCTGG
GGACAAAAAAGCAGCACAAAAGAACGTAAGCCGGACCTTGTACATGGCTA
GACGGGCATACCGACCCGACGAGGATTTAGTGTCGGCGGCGTGCAGCAAC
TTGGCTGAAGTGATGTGGATGatggatggggaaggaggaggggaaggtga
gggaatCGCTCAGGAGGCTGTCGAGCTGGCAGAGAAAGCCGCACGGCTGA
CCGATAAGATGGAGCGTTTGTCGTTGCTGCGTCAATCGtccgccaaggag
gaagctgagcCCGTAGGAGGCGAGGACACCGAAGCGAcgcctgggaggaa
agggggcagTTACCTCCCCCCGATGCCCGCGTCCGACGCCAGCATCCAGG
CTAAGTCGGCTTCCACGGGGGTCTGGGCCTTACCTGTGGAGCTCTTGGCC
TTCCACGAGCGCAGTACCCGTCGTCGCCTCATTTTGGGTCGCTGTTTGGC
GCGTGcgcacagggaggaggaggctgcgtACTACCTCTTCCAAGCTCTGC
AAGATTCTCGCAGGTCGGGATTGCGCTGCAATCCCATTTTATACGCGCAG
TGCTtggcggcggtgggaaaCATGCATTTGCTTTCCTTGTTGCGGCGGGG
TCTGGGGACGGACCTCTCGCATTTGGCCGCGGCAGGGTGCCGGGAAGACA
ATGAGATGACATGGGACGCACAGGGCTTGTTAGTGCGGGCTCTGGGAGTG
TTGGAGCCGGTCTTAGGCAAGGAGCATCCGGAGGTGGTCGCGTGTCACGC
CAATTTGGCCCTTTTTCAGCCTttggcgcgggcggaggctgtCTTGGCGG
ACGCGatgagggcggcgggaggggagcgggaggacagggaggggggagga
gggcctggcgGGGAGATGGAATCCAACAGCAGCAAAAAGGTTGACGGCCA
CAGGGAACATGAGGCTGTACgcagcgaggaagagggctcgGGGGCAGCTC
AgtcgcctctttcctctccccccgtgGCCCGCGAGATGATGCGAGTACTG
GAGGGAAACCGGCAGGCGCTGAACACCTTAATCATTGCCGTCGGTCGGCA
CAAGGCTGATCGACATTGTGcggtggagctggtggcTGCGAAGCAACGAA
GGAGGGCTAAAGGGAGGCAGACGGCGGACATCTCCTTGGCAAGTACGGAG
ATTCCGGTGGGGACAGACgtgggccagggagagggaggatgcgacGGATT
CGGCCGCGGGACGACTGACGGtgggatcgaggaggaggaagaggaagagc
cgccccctcccttacaGGTGCTGTGGACCCTGCAGGGGGTCGTGGGGGTC
GGGTTGCAAGCCTGGGATgtcaaggcgggagggcgaggggaaaagctGGG
GAGgatcttggaggaggatccggTCGAGCCCTGA

Coding sequence (CDS) from alignment at CM002462.1:165621..167504+

>rna3832 ID=rna3832|Name=rna3832|organism=Nannochloropsis gaditana|type=CDS|length=1884bp|location=Sequence derived from alignment at CM002462.1:165621..167504+ (Nannochloropsis gaditana)
ATGCTATGGCGGTGCATCAGTAAATCTAGGTGGTTACTTCCTCGGATCAG
TgctacctcctgcctccacgctTTACCAAAGGCTGCtactttctcctctt
tttcacgagctccgcctctgccatcTGCTCAATGGCCTACACAATCTGAA
ATGCCCACCAATGGGCTCGACTCAGCCATTTTTAAAACATTGTGGGAGAG
TGCACTTGATGCACACGCACGCGGGCGGTACGCGGAAGCCCTTGCAAAAG
CCAAAGCAAGCATTGAAACGGCCGCCGAGGGCGAGCATGGCAGCCTCGGG
CGCGAGCATGCTTTGCGAATGGCTCATCACCTAACTGGAGTGGCTTACAT
GCAACTAGGTTGTGTGGCACAGGCAGTTCAAAGCCTGGAACAAGCAAAGG
ACATCGCGATCAGGGTCAgtggggcaggtggaggggatgacgCGTACACA
GACTTGGGCGGGGTGCTTAATGACCTGGGGGTTGCAAAGGCATTGGCTGG
GGACAAAAAAGCAGCACAAAAGAACGTAAGCCGGACCTTGTACATGGCTA
GACGGGCATACCGACCCGACGAGGATTTAGTGTCGGCGGCGTGCAGCAAC
TTGGCTGAAGTGATGTGGATGatggatggggaaggaggaggggaaggtga
gggaatCGCTCAGGAGGCTGTCGAGCTGGCAGAGAAAGCCGCACGGCTGA
CCGATAAGATGGAGCGTTTGTCGTTGCTGCGTCAATCGtccgccaaggag
gaagctgagcCCGTAGGAGGCGAGGACACCGAAGCGAcgcctgggaggaa
agggggcagTTACCTCCCCCCGATGCCCGCGTCCGACGCCAGCATCCAGG
CTAAGTCGGCTTCCACGGGGGTCTGGGCCTTACCTGTGGAGCTCTTGGCC
TTCCACGAGCGCAGTACCCGTCGTCGCCTCATTTTGGGTCGCTGTTTGGC
GCGTGcgcacagggaggaggaggctgcgtACTACCTCTTCCAAGCTCTGC
AAGATTCTCGCAGGTCGGGATTGCGCTGCAATCCCATTTTATACGCGCAG
TGCTtggcggcggtgggaaaCATGCATTTGCTTTCCTTGTTGCGGCGGGG
TCTGGGGACGGACCTCTCGCATTTGGCCGCGGCAGGGTGCCGGGAAGACA
ATGAGATGACATGGGACGCACAGGGCTTGTTAGTGCGGGCTCTGGGAGTG
TTGGAGCCGGTCTTAGGCAAGGAGCATCCGGAGGTGGTCGCGTGTCACGC
CAATTTGGCCCTTTTTCAGCCTttggcgcgggcggaggctgtCTTGGCGG
ACGCGatgagggcggcgggaggggagcgggaggacagggaggggggagga
gggcctggcgGGGAGATGGAATCCAACAGCAGCAAAAAGGTTGACGGCCA
CAGGGAACATGAGGCTGTACgcagcgaggaagagggctcgGGGGCAGCTC
AgtcgcctctttcctctccccccgtgGCCCGCGAGATGATGCGAGTACTG
GAGGGAAACCGGCAGGCGCTGAACACCTTAATCATTGCCGTCGGTCGGCA
CAAGGCTGATCGACATTGTGcggtggagctggtggcTGCGAAGCAACGAA
GGAGGGCTAAAGGGAGGCAGACGGCGGACATCTCCTTGGCAAGTACGGAG
ATTCCGGTGGGGACAGACgtgggccagggagagggaggatgcgacGGATT
CGGCCGCGGGACGACTGACGGtgggatcgaggaggaggaagaggaagagc
cgccccctcccttacaGGTGCTGTGGACCCTGCAGGGGGTCGTGGGGGTC
GGGTTGCAAGCCTGGGATgtcaaggcgggagggcgaggggaaaagctGGG
GAGgatcttggaggaggatccggTCGAGCCCTGA

Synonyms

Publications