rna383, rna383 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna383
Unique Name	rna383
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2259
Alignment location	CM002455.1:935999..938677 -

Link to JBrowse

Properties


Property Name	Value
Product	vacuolar h -atpase a subunit
Orig transcript id	gnl\|cribi\|Naga_100003g103.1846.mrna
Orig protein id	gnl\|cribi\|Naga_100003g103.1846
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:935999..938677 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g103	gene369	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30329.1	cds383	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna383	rna383-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:935999..938677-
coding sequence from alignment at CM002455.1:935999..938677-

mRNA sequence

>rna383 ID=rna383|Name=rna383|organism=Nannochloropsis gaditana|type=mRNA|length=2259bp
GACTCTCACGCGATTCGATGCCGCTGACACCTCCCTCCTTCATTCGCCAT
CCTGCACCTGTCCCATATGCACGCACAGATAGACAAGGAACGGGCCGACG
GGGGTCCGCACCGACCTTTGGAGCCCTTCACCGTGTTCTGTTCCTCCCTC
TTCCAGGAGAGGATCGAATCGGAATCTCCTTCCTTACAGCGCCGCTCACA
CTATGTCGAACACCTCTTCGGATTATCCAGTGCGACAGCAAGCTCATGCA
ATGGGAGCTCTGAAGCCCCGTATGCCCGAAGAAATGATGGGTACTCTCTC
TTTAGAAGAGATTCCGAGCCCTCCTCCAGACAACAACGGAGGCGTACCAC
ACGCAGGCTCTGACAGCTTAACGGGTGAGGGGGAACCCGCTGCTGATACA
GTTGGTACACCCAAGACAGTCATTACAGCTCCTATCACTAGTACGGACTC
TTTTCGGCTCAGCGCTTCCGAGTCCGAGCTCGCAGGCGATCGAAGCAACG
AGCCCGCCCGAGGCACCTCTGTGTCGAAGCCGATGCAGGTGAAGCACCAC
ATCCACGTATCATTTGACCCCACCAGTGGGGCGTTCAAGGGCCTGCCTCC
GGAGTGGGGAAAGCACTTGCCAGTTGGTGTCTCCAAGGAGGAGGCGAACG
TCACGGCAACAGACAGGCACGTGGCCCCCCCAAAACCCACAGCAGAAGTG
AAGAAGACTTTGAACCCTCTGCGCAAATTCACCTGGTGGTCCAGTGGGAG
CAAAGGAGGTGGAGACCGGAATCCTCCCCTGGCAGGCACCGTCATTGGCG
CCCCTTTCAATGTCCAACACACCACTCACGTCCGCCCAGACCCCACGTCT
TCAACGGGGTTCAGCGGACTCCCTCCGGCGTGGCGTGCCGTCCTCAAGGT
TTCCGGTATCACCAAGCAAGAAGCCGTGGACCACCCACAGGCCGTCTTGG
CAGCTTTGAATTTCCACATGCAGGGTCCTACGCACACCCGCGGTCCCCTG
CCCTCACGCGCGGCGGTGGAGCAAGCCATGGCAAAAGCCCTGCGGATTGT
GAAGGATGACCCCCGCCAGTACTTCAGCGACTTGAAGCGCTTGGGCCAAG
GCGCTTCGGGCACCGTATATGCAGCCACCGATCGACGCACTGGGGAGCGG
CGGGCGCTAAAAATAGCCCCAGTTAGCGAGCTCGCCGATCTGACGAACGA
GATCGGCCTGCAGAGCATGAGCGATCACCCGAACGTCGTCCGCATCTACG
AGGCTTTCGTCACTACCTCCGAGGTCTGTATCGTCATGGAGCTGATGCTC
GGAGGGTCTTTGACAGACGTCTTGGGGAAGCACGTGGTGGACTTCAAAGA
GCCGCACATTGCCTATGTCGCCAAGGCAGTGCTCTCGGCCCTGGCCTACA
TGCACTCCTCCTACCGCATGCATCGTGACATCAAGAGCGATAACGTACTG
GTGGACAAGGAGGGGCAGGTAAAGATAGCCGACTTCGGCTTTGCTATCGC
ACTGACGAAGGAGACGTCCAAACGGCATTCCGTAGTTGGCACGCCCTACT
GGATGGCGCCTGAGCTTATCCGGGGCACGGACTACGACTCCAAGGTGGAC
GTGTGGTCCTTGGGTATCACCTGTATTGAGATGGCGGAGGGCGAACCTCC
TCATCTGCATGAGCCCCCCCTCCGCGCGCTCCTCATGATCAGCATCTCCG
GCTCTCCCGCGCTCAAGGATCCGTCCCGATGGTCCTCCCAGTTTCTCCAC
TTCCTAGCGCAAAGCACGTCAGTGGATGCGGAAGCACGGCCTACGGCGGA
GCAACTTCTCAACCATCCGTTTTTGACGATGGCTTCTACGCAAGAGGAGT
ACGGGGCTTTCGTCCGAGCTCAGCTTGAGGCCCGACGTCGTCGGAGGCAA
CAGCAAGCGCAGGCACAGGCTGCCCACAACAAAGGGAGGTAGTATCAAAA
CAGGGGCAAAAAGAAAGCAAAGTGTGCCATCGGGAGGGAGGAATGATAGT
GACTTCACAACAAGTCATGTGAAAGCTGCGAAATACGTCGCGGGATGTGG
GACTCTCCTCCACACGCAAGTATTTGCGATACCAGAATTATGTGATGGGA
ATATTTCGTGCGATGCAACTATTTGCTACCATTTTTTGCATTCAGAGAAC
AGATGCACATCCGCAATGCTCAAGGCACATACACTTAAAGTACCCACAAG
CCCCAAAAAAACGTGTACGTCTGTGTGCGAACTTCGTTGCATGCTTCGTT
TAAATCTTC

protein sequence of rna383

>rna383-protein ID=rna383-protein|Name=rna383|organism=Nannochloropsis gaditana|type=polypeptide|length=621bp
MAGVVVDDGVVESDYGFIHRVSGPLVIADNMQGAAMYELVRVGHQKLVGE
IIKLEGNTASIQVYEDTAGLTVGDPVLRKRQPLSLELGPGIMGTIFDGIQ
RPLEDIFKRDQNVYIPRGADIPSLDPSKHWQYTPVAGLREGMALSGGDIF
GTVWENEIMTSHKIMVPPNIYGKVKKVYGAAADKKDSFSVEDTVLEVENE
TTKQVHKLKLSHFWPVRRPRPVVAKLPGNSALTTGLRVVDAIFPSVQGGT
VAVPGAFGCGKTVISQSLSKFSNSDAIVYVGCGERGNEMAEVLAEFPELK
LDINGKEVGIMNRTCLVANTSNMPVAAREASIYTGITLAEYFRDMGMNVS
MMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKAL
GSPEREGTVTVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHF
PSVNWLISYTKYMRVLEPYFNGIDPQYSDLQKRAREILQVEENLSEIVQL
VGKESLSEDQKVSMEVARIIREDFLQQNAFSTYDYTCPIHKSIGMLRTII
TLYNCSQKAIADSPANQKVTWAYIKTALAPVIQKVIEGKFQEPKTAPEEI
HAYYNDVAAEVEQAFQTLSGP

mRNA from alignment at CM002455.1:935999..938677-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna383 ID=rna383|Name=rna383|organism=Nannochloropsis gaditana|type=mRNA|length=2679bp|location=Sequence derived from alignment at CM002455.1:935999..938677- (Nannochloropsis gaditana)
CGCCCCTGCTCCCGTCGACTCTGAGAATCTTTGCCTTCCCGCACCCTAAC
CTTTTTTAAACTTCCCGACCCTCTACCGCGATTTGTTCATGGCTTCTTCA
AGCAACATTCTAGCCATTCATTCCTGGTCCGGATCTTGACTATGCTTTGT
TCCTATGTTGTGTCACTGTGTCATTGCGTACTGCCTGCGATTGATGTCTT
CTGGCTTGGAGAGCCTTCTCGTCATGCCAGCTAATGATAGCATGCCACCT
GTGAACATCCTCAGTCTTACCTTATTGTACGATCTATTGTCGCATAAATT
TAGACGCGTGATACTCAAGCAAAAATGGCGGGCGTTGTCGTAGATGATGG
CGTCGTGGAATCAGATTATGGCTTCATCCATCGGGTCTCCGGGCCTCTGG
TCATCGCGGACAACATGCAAGGTGCTGCAATGTATGAGCTGGTCCGTGTA
GGTCACCAGAAGCTGGTGGGAGAAATTATTAAATTGGAGGGCAACACGGC
TTCCATTCAGGTGTACGAGGACACGGCAGGGCTGACAGTGGGTGACCCGG
TCCTTCGCAAGCGCCAGCCTTTATCTCTCGAGCTCGGGCCCGGCATCATG
GGAACCATTTTCGATGGGATTCAGCGACCCTTGGAAGACATTTTCAAAAG
GGACCAGAACGTATATATTCCTCGTGGGGCCGATATTCCTTCCCTGGACC
CCTCCAAGCACTGGCAATACACGCCTGTGGCAGGCTTGCGCGAGGGCATG
GCTCTTTCAGGCGGCGACATTTTTGGAACGGTATGGGAGAATGAGATCAT
GACGTCGCACAAGATCATGGTACCCCCCAATATTTACGGTAAGGTGAAGA
AAGTGTATGGCGCAGCGGCCGACAAGAAGGACTCTTTCTCGGTGGAAGAC
ACGGTGCTGGAGGTCGAGAATGAGACAACAAAGCAAGTGCACAAGCTGAA
ACTCTCGCACTTCTGGCCTGTGCGTAGGCCCCGCCCCGTCGTGGCCAAGC
TGCCCGGTAACTCTGCGTTGACAACTGGTTTGCGCGTGGTGGACGCGATT
TTCCCCTCAGTGCAGGGAGGTACCGTGGCAGTGCCTGGGGCTTTCGGATG
CGGGAAGACAGTCATCTCCCAATCGCTTTCCAAGTTTTCAAATTCAGACG
CCATCGTGTACGTGGGCTGTGGCGAACGCGGAAATGAAATGGCGGAAGTG
TTGGCTGAGTTCCCTGAGCTGAAGCTCGATATCAACGGAAAGGAAGTGGG
GATCATGAATCGTACTTGCCTTGTGGCCAACACATCCAACATGCCTGTGG
CGGCTCGTGAAGCTTCCATCTACACGGGTATCACCCTCGCCGAGTACTTC
CGGGACATGGGCATGAATGTGTCCATGATGGCGGACTCCACTTCCCGGTG
GGCCGAGGCCTTGCGTGAAATTTCGGGCCGCTTGGGCGAGATGCCTGCGG
ACTCGGGTTATCCCGCTTATCTGGGTGCCCGCCTTGCCGCCTTCTACGAG
CGTGCCGGCCGGGTCAAAGCGCTAGGGTCTCCGGAGCGCGAGGGAACGGT
CACGGTCGTGGGCGCGGTGTCGCCGCCCGGTGGCGACTTCTCCGACCCCG
TTACGGCGGCGACGTTATCCATCGTGCAGGTCTTCTGGGGGCTCGATAAG
AAGCTGGCGCAGCGCAAGCATTTTCCCTCGGTGAACTGGCTAATTTCATA
CACTAAGTATATGCGCGTGCTCGAGCCTTACTTTAATGGCATCGACCCGC
AATACTCCGATCTGCAGAAGCGTGCCCGTGAAATTTTACAGGTGGAGGAG
AACCTGTCAGAAATTGTGCAGCTCGTAGGAAAAGAGTCACTTTCAGAAGA
TCAGAAAGTCTCTATGGAGGTAGCGCGTATCATTCGAGAAGATTTCTTGC
AGCAGAATGCATTTTCAACGTATGACTATACTTGTCCCATCCACAAGTCT
ATTGGGATGCTCCGCACCATTATCACGCTGTACAACTGTTCCCAGAAGGC
AATCGCTGATTCTCCTGCCAATCAGAAGGTCACATGGGCATATATCAAAA
CGGCATTGGCGCCAGTCATTCAAAAAGTCATTGAAGGGAAGTTTCAGGAG
CCCAAGACGGCCCCGGAAGAAATTCATGCTTACTACAACGACGTTGCCGC
GGAGGTGGAGCAGGCGTTTCAGACTTTGTCAGGGCCGTGAAAAAATTGAA
AAATGATGGAGTAAGGGTGCATGTGGATTGGCAAGCGTCCGACTTATTGT
GTATGTTGAGGCGTGGCGTGACAGAATTGTACTTAAAATGGATCGATCTG
CTCGGGTAACGCGCGGGACAAGCGATCAAAATGCTTCTTGTCCACCATCA
GCATTGCCAGCTCTGAGGCCTTGTGAAGAAGATAGAAAGGTTCTTCACCA
GTCGTGGTTCGAAGACACCAGAAAGTTGAGCCTGCTTCGACTATTTAGTC
CATTTCCGTGGGTGTTGGGAAAATGCTTGAGCGTATTTTGGACCGCATGG
GCACTATGGAGGAACGAAGAACACTCGTGATGAGACGAAACAAAGAAGTG
AAGATTTAAACGAAGCATGCAACGAAGTTCGCACACAGACGTACACGTTT
TTTTGGGGCTTGTGGGTACTTTAAGTGTATGTGCCTTGAGCATTGCGGAT
GTGCATCTGTTCTCTGAATGCAAAAAATG

Coding sequence (CDS) from alignment at CM002455.1:935999..938677-

>rna383 ID=rna383|Name=rna383|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at CM002455.1:935999..938677- (Nannochloropsis gaditana)
ATGGCGGGCGTTGTCGTAGATGATGGCGTCGTGGAATCAGATTATGGCTT
CATCCATCGGGTCTCCGGGCCTCTGGTCATCGCGGACAACATGCAAGGTG
CTGCAATGTATGAGCTGGTCCGTGTAGGTCACCAGAAGCTGGTGGGAGAA
ATTATTAAATTGGAGGGCAACACGGCTTCCATTCAGGTGTACGAGGACAC
GGCAGGGCTGACAGTGGGTGACCCGGTCCTTCGCAAGCGCCAGCCTTTAT
CTCTCGAGCTCGGGCCCGGCATCATGGGAACCATTTTCGATGGGATTCAG
CGACCCTTGGAAGACATTTTCAAAAGGGACCAGAACGTATATATTCCTCG
TGGGGCCGATATTCCTTCCCTGGACCCCTCCAAGCACTGGCAATACACGC
CTGTGGCAGGCTTGCGCGAGGGCATGGCTCTTTCAGGCGGCGACATTTTT
GGAACGGTATGGGAGAATGAGATCATGACGTCGCACAAGATCATGGTACC
CCCCAATATTTACGGTAAGGTGAAGAAAGTGTATGGCGCAGCGGCCGACA
AGAAGGACTCTTTCTCGGTGGAAGACACGGTGCTGGAGGTCGAGAATGAG
ACAACAAAGCAAGTGCACAAGCTGAAACTCTCGCACTTCTGGCCTGTGCG
TAGGCCCCGCCCCGTCGTGGCCAAGCTGCCCGGTAACTCTGCGTTGACAA
CTGGTTTGCGCGTGGTGGACGCGATTTTCCCCTCAGTGCAGGGAGGTACC
GTGGCAGTGCCTGGGGCTTTCGGATGCGGGAAGACAGTCATCTCCCAATC
GCTTTCCAAGTTTTCAAATTCAGACGCCATCGTGTACGTGGGCTGTGGCG
AACGCGGAAATGAAATGGCGGAAGTGTTGGCTGAGTTCCCTGAGCTGAAG
CTCGATATCAACGGAAAGGAAGTGGGGATCATGAATCGTACTTGCCTTGT
GGCCAACACATCCAACATGCCTGTGGCGGCTCGTGAAGCTTCCATCTACA
CGGGTATCACCCTCGCCGAGTACTTCCGGGACATGGGCATGAATGTGTCC
ATGATGGCGGACTCCACTTCCCGGTGGGCCGAGGCCTTGCGTGAAATTTC
GGGCCGCTTGGGCGAGATGCCTGCGGACTCGGGTTATCCCGCTTATCTGG
GTGCCCGCCTTGCCGCCTTCTACGAGCGTGCCGGCCGGGTCAAAGCGCTA
GGGTCTCCGGAGCGCGAGGGAACGGTCACGGTCGTGGGCGCGGTGTCGCC
GCCCGGTGGCGACTTCTCCGACCCCGTTACGGCGGCGACGTTATCCATCG
TGCAGGTCTTCTGGGGGCTCGATAAGAAGCTGGCGCAGCGCAAGCATTTT
CCCTCGGTGAACTGGCTAATTTCATACACTAAGTATATGCGCGTGCTCGA
GCCTTACTTTAATGGCATCGACCCGCAATACTCCGATCTGCAGAAGCGTG
CCCGTGAAATTTTACAGGTGGAGGAGAACCTGTCAGAAATTGTGCAGCTC
GTAGGAAAAGAGTCACTTTCAGAAGATCAGAAAGTCTCTATGGAGGTAGC
GCGTATCATTCGAGAAGATTTCTTGCAGCAGAATGCATTTTCAACGTATG
ACTATACTTGTCCCATCCACAAGTCTATTGGGATGCTCCGCACCATTATC
ACGCTGTACAACTGTTCCCAGAAGGCAATCGCTGATTCTCCTGCCAATCA
GAAGGTCACATGGGCATATATCAAAACGGCATTGGCGCCAGTCATTCAAA
AAGTCATTGAAGGGAAGTTTCAGGAGCCCAAGACGGCCCCGGAAGAAATT
CATGCTTACTACAACGACGTTGCCGCGGAGGTGGAGCAGGCGTTTCAGAC
TTTGTCAGGGCCGTGA

Synonyms

Publications