rna3819, rna3819 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3819
Unique Name	rna3819
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1317
Alignment location	CM002462.1:132443..137666 +

Link to JBrowse

Properties


Property Name	Value
Product	amine oxidase
Orig transcript id	gnl\|cribi\|Naga_100097g5.3747.mrna
Orig protein id	gnl\|cribi\|Naga_100097g5.3747
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:132443..137666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100097g5	gene3676	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3819	rna3819-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26856.1	cds3810	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:132443..137666+
coding sequence from alignment at CM002462.1:132443..137666+

mRNA sequence

>rna3819 ID=rna3819|Name=rna3819|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp
CGCGCCACTATTTAATAGCGCTCTAACTTGGGTGAAGCATTCATATCTTC
AAAAGACGCGTGTGATTCTTCCACAAAAAAGAGATGAGGTATACTTGCTG
GCATATTTCCTTTTACGAAGGAAAAAGTATTGCCGTGGTCACATTGTCCC
GGTAGAGGATGTCTGTATGGCCCCGCGGAAGGAGAACTTCAAGACCTCGC
TTGTGATTCCTTTTTTTTATTAAGCAGGACATACAGCGCAATGTGGTTCC
CAATAGAGAGGAAGTCGTACTTTTGCTTCGGCCCACCAGGTGTTTGGTCA
AAGTCGTGCGTTTTGCTCCGTGCATTTGTCGTGCGACTTGTTTCGTTTGC
TGGTGCTTCGCATATTCTTCGTCAAGCGGCCGAACGAGCCGTCCTGTTCT
GTTCGAAAAAGTCTCTCAAAGTCATCACTTTCCCCTTTCTCCCACTAATC
ATAAACATCATTGGTTGCTTCAGACTCGAACGAAGTATGGCCAGCACGTG
TTCCTCCGACCATCGCGTCATGCGAACCGAAGGCCCGTGTGGATGCGTCG
TGGAAGTAGGTAGCAGCCAAGCCGGAGCTACCCCCGCCAACACGACGTCC
CCAAAATGCTCCTGCACCTGTTGTGGAGATAATTGCCGTTGCACTGAAAC
GAAGGGGCGATGCGACTGCGCGGAGAGGATGGAGGCGGCAGCCAAAAAGG
ATCAGCCAACGACGATTTGCGCAGAAGCGCCCAAGGGCTGCGCATTGGAG
CTGGGCGGGTCCGATGTTTGCGCGACGTGCGGCCGGAAGGGCTGTCGTTG
CATTGCCTTGAAAGGCCGCTGCGAGTGTCCCGTCACGTCCACAGGATGTT
GCACTCCGGAAGCTGGTGTGGAGGAGGCCTGTCCTACTTGCAACCGAACG
GGCTGCAGATGCATCGCTCTCAAAGGACATTGTGGATGCGCCAAGTGACC
GTAGAAGGCCATTGTTCGAATTTTCGCCTATCATACCAAAGATGTCTCGA
GGTTGAGGCCATGGTAAGGAATACATATACATGTTATGAGAGATACGCGT
AGTGAAGTTGAGGTAGCCAGAGATGAAGTTGTCAGCTCATGAGGAGTGGC
GCAGGCGCATGCCAAAATTGTAGGTGAACATCTCGCTTGGCATGATTCGT
AGGTTGGAGAGTCTTGAATTCATCTTTGCGCAGTATTGAACAGCAGTATC
GGCCGGTCCAGAAGAGGCGTAAAGCTGACGAGGAAGAAATGAAGTCAATA
AGTGAGCGAGCTTGTCGTTCTACTTCGATAAAAACGTATTTCAAACTAAG
TTTTGGGCGGAAATGTC

protein sequence of rna3819

>rna3819-protein ID=rna3819-protein|Name=rna3819|organism=Nannochloropsis gaditana|type=polypeptide|length=576bp
MSSTKAFLSRSVILVAILAYLLRPINRPSFTVIEPLNPQDPINLPSGTSR
RVLVAGGGLAGLSAALELAERGFQVSVWEASPVLGGRLATRTVQLCNQTF
AIEHGFHAWFANYHVFADIRKRLGIDHYFRPWGAVQFIFKDPRYKPEALE
SQGPYPWNLISIVLRSPNLRFIDAILSTRHVVDLLWFDHKTVWGKYDEQS
FSEWARAMGIARVFYDVLYAPTLSVTVNERQNISAAEMLSMNHIYFLSHP
RADRREVTRVDYETAIIQPWEMRLQALGVKIERGKRVGRLNFTETGVHVV
EEEEEGEEGVAGSDFDHVVLATNLQGVKSILDASSVSPPSSLSSPSPPST
ASSFSYVTSTAALAQLRHQTSFLEIAPPYKVFRAYFDRQLRGPYNQEIVL
ETPDSSPINLIAQYHLLEEESAEWARRTGGSVIEFHLYTWEGGYDGGKGD
KFAAGEEVRVLWEFLRPTVCGHLLPEMCAQNFTLVDGYVAHYEDFPSFKK
GLHKYRPRSQTPHQLGLTRLSLAGDWLSTSFPSALMERAVATGREAANVV
LQEEGIRQAPLPVTTSHGPGLRVLAS

mRNA from alignment at CM002462.1:132443..137666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3819 ID=rna3819|Name=rna3819|organism=Nannochloropsis gaditana|type=mRNA|length=5224bp|location=Sequence derived from alignment at CM002462.1:132443..137666+ (Nannochloropsis gaditana)
AGCTCTGTTCTCGTGTCTGCGGATGATAACGGTCCCTTTGCACCGAAATT
TTCGATGAAATAACCATGACGGGCGCCACGTACTACGTAGTACTACGCAC
ACGGAAAACCGCAGGCCTTCGGACGACAGTAATTCGATTCATGTCAACCA
AAATACCCTTGTAATACATACATTCACTTTTTGATCTCATAAAAAACTTT
ATTAAACGTTATAATCTTCTTATAGGACGCGAGCCTTCCATCATGTCGAG
TACAAAGGCATTTTTGTCGCGGAGCGTCATACTCGTCGCCATTTTGGCTT
ACCTCTTGCGTCCCATCAATCGTCCATCTTTTACCGTAATTGAACCTCTT
AATCCACAAGACCCCATCAACCTACCGTCTGGTACTTCTCGCCGCGTCCT
TGTCGCAGGAGGCGGCCTGGCAGGGTTATCGGCCGCCTTGGAATTGGCTG
AACGCGGGTTTCAGGTTTCTGTATGGGAAGCCTCCCCTGTATTAGGTGGC
AGATTGGCCACGCGAACGGTGCAACTTTGCAATCAGACCTTTGCAATAGA
GCATGGTTTCCACGCCTGGTTCGCAAATTATCACGTTTTCGCCGACATTC
GAAAACGATTGGGCATTGACCATTATTTTCGACCGTGGGGTGCCGTCCAA
TTTATCTTTAAAGACCCTCGGTACAAACCAGAAGCTCTGGAAAGTCAAGG
GCCATACCCATGGAATCTAATCTCCATCGTCCTCCGTTCCCCCAATCTCC
GCTTCATCGACGCCATCCTTTCCACCCGCCATGTCGTGGATTTGCTCTGG
TTCGACCACAAAACTGTCTGGGGCAAGTACGACGAGCAATCTTTTTCGGA
ATGGGCTCGGGCCATGGGGATTGCCCGGGTATTCTACGACGTGCTGTACG
CGCCCACGCTATCCGTGACGGTCAACGAGCGGCAAAACATCAGTGCTGCG
GAAATGCTGAGCATGAACCACATATATTTCCTCAGCCATCCCAGGGCGGA
CCGTCGCGAGGTGACCCGGGTTGATTACGAAACGGCGATTATCCAGCCGT
GGGAAATGCGGTTGCAGGCGTTGGGGGTGAAGATcgagcgagggaagagg
gtgggaagactCAATTTCACCGAGACAGGGGTCCATGttgtcgaggaaga
ggaagagggggaggaaggggtagcTGGGAGCGACTTTGATCATGTCGTGC
TCGCCACGAATCTGCAAGGGGTCAAGTCGATCCTGGatgcttcctccgtc
tcccccccttcctccctctcgtccccctcccctccttccaccgcgtcgtc
cttctcgtACGTGACGAGCAcggccgccctcgcccagctcCGTCATCAAA
CTTCCTTTTTAGAAATTGCTCCCCCTTACAAGGTGTTCCGCGCCTATTTC
GACCGACAGCTCCGGGGACCGTACAACCAAGAGATCGTGCTGGAGACCCC
AgactcctcccccatcaACCTGATCGCCCAGTATCacctcctggaggagg
agtcggcCGAATGGGCCCGCCGAACGGGGGGCAGCGTCATCGAGTTCCAT
TTGTAtacgtgggagggggggtacgacggggggaagggggacaaATTCGc
agcaggagaggaagtgcGTGTCCTCTGGGAGTTCCTTCGGCCCACCGTGT
GCGGGCATCTGCTTCCCGAAATGTGTGCGCAAAACTTCACGTTGGTGGAT
GGGTATGTGGCCCATTACGAGGATTTCCCGTCCTTCAAAAAGGGCTTGCA
CAAATACCGCCCCCGAAGCCAGACGCCCCACCAACTGGGCCTGACTCGCT
TGAGCCTCGCAGGGGACTGGCTCTCCACCAGTTTCCCTTCCGCGCTGATG
GAACGGGCGGTGGCaacggggcgggaggcggccaacGTGGTGttgcaaga
ggaggggatccgCCAGGCGCCACTGCCCGTCACGACTTCTCACGGGCCAG
GACTGCGGGTGCTGGCTtcgtagggagggagggagagagggagggaggga
gagagggagggagggagagagggagggagggagagagggagggcgtgctg
gCACTTGGCGGTGCTGCACTTTTGGGGAGATGGTAAATAGACATGCACGA
GGTTTTTAGGCGAAGAGTGAGCTTCGACTTTCAAGGAAGGGAACAGGAGC
GAGTTGAAGCTCGCATTAAGTGCTAGGATAAGCCCTTGGTCCTAGaggtg
atggaaaagagTGTTAGGGTaaggggtggaaaagggTTGAAAAGGAGACC
ACCGTCCATGTATTTAATAGAaagcaagaaggaaagcggcGAGCGGGTCA
ATGGATCGGTCATGCACGCAGATCTCTCCAACGCACCGGGAACCAAGATA
AGGGGAAGGGTAAGGCCAGTCCCCTTCATGTCCAAACATGGAGCCTCCAA
CCCTCCTTTGCGCCAAGGCGGGGGTCTCAAGACAGCGTTTTCTTTGTGTT
TGCAGTCCAGTTCCCCTGCTATCAGCGCTCTTTACATGGGCACCGTAGGG
TTCCGTCCCGGGGTAGGCCAAAGGAGGCTTTCCTCATCAATTCTACGAAG
CACTTCGACGCGTCACGCCAGGATATGGCCATTCATTCAGTCtacttttc
cttccttcaaaCCCACAAAGCCTTGCCCCTCGCCGACATtcgcctgcccc
tcgcctttccatCTTGGATATACCCCCGGGGAACcccatcttcttcgtcg
cTCATTCATAGCCCACCACTTGGATACccaccgtcctctccctctccccg
tccagctccaccatcatcaccGATTGCCAACGGCCAATTTTCAACTTCCC
CCCGCTCACGGGCACCACCAAAGTGTTTCCCAACAGCATGGACAACAAAT
GCGCGTGGCAATTTTGAGGTTCCTGGGCCCGCCACTCTTCCACgctctcc
cactcccctcctgctgccaCCCTCCGtttgtcctcctcggaaGCCGGGCG
CAAATGGATGTCGTTGTGGAGGTACGGGTACTGGGGAGGGGCCAACTTCA
AAAGAAATTGGCGAATATCATCCATCAGACGGCTTTCACATTCGTTGATC
GTCACGGCCGTGGTAGTGTGACGGCTGACGATATGGACCCATCCTTCCAC
CACCCCGGACTCCCGCACCGCCTGTCGAAGCTGCGGCGTGATGTCGTGCA
GGGAGATGcctgaaggagaggacgagagcgaggaaggaggggaggtacCA
TGGAGTGATGAATGCCTGGCAAGATGGTACGATTATCAATGTCACCAGAC
GACAGTCCCGTCATGCTTTTCGTCGAACGCTTTCATGGCATGTCTTACCG
CTCTTGGTCGGAAGGCTTATTTCCAGGTAACTAGTCACGGATGGTCCAGT
GTGTTTCTTCGTGTGCTGGGCGCCAAAGCTTACCTTCTCCCCCGTGCCCG
TCGTGTCAACCACGTCCGGatcggggagagaggcacgATGCACCTCCAGG
GCTGGCGAAGGGGGATGGTATTGatctgggggggggatgtATGGGTTGCA
AAGGGACATAAGGGGAGGGCAAATTTTCAAAAAGTTGAATGCGCGACAGT
ATCGtagcgaggaaaggggagtcATATGATAACAGGGCAGGTCAAATTGC
TAACATGGAGAAAAGAAccgcaggaggtggaggatgggggcTTGCTTGCC
CAATTTTTGGTGTGGCATCTCTAGCAGTACCTGATGGTACCGAGGAAATG
GAGCTATGCGTGTCATGAATGAGCTGGAGGGCAGCTTGTAGATGACCGTG
GGCAAGCAGAGTCGTTGTGATTGTCGTAGGAAGACGAGGTAGAGGTGATA
GGGGCTGCTTGAACGACTTTGTTGAGGTAATGAAGGCAAACGTTGAAACA
CCCACGTATGCAAAAAGCAACAGAGTTATAAAAGGAAGGGTAGTACTCCT
GAGCGCCATTTCAATCTGTAGCGTGCTAATACGGTATGAATGTCGTCTTA
GGGGGTCAAAGTGGTCAACAATAATCAAGGATTATCCGCAATTGGATGCT
GAGGAGAGATCATCACTCGCCGTGGGCGGGCAAACGTTCTTGGAACAACT
TCAACACGCAATTCCccgagggaaaaaaaaacacatAGAAGGTCCTCGCA
TCCACACATGCGCCTTTCCATGCGATATATTCAACTTCGACGCTATGAAA
TATTCGTCTTGTCCGACGGAGGTATCATTTTTCCGTTTGTACCACGGCGT
AGACTTTCTTCAAAAGCACTTTTATGTCACCCCCGAGGTGTTTGTGGCAA
CGTTTACTCCGTCCATATGACAAACGGTTTAATGTACCGTATCAAACTGA
CAATTTTTTAATTTGCTATACGTTCTatggggaaaagaggacggAAAAGC
GTGCTAACTTGAACGCATCTGATGATGTGTTTCCCATAGGGCTTCACTGC
GTCGACTCGTCACTGGTCGAAGAGAAGCACAATTGCTCTAGAAATCGGAC
GATTACCGCATCGATTAAGACAGCAGACCTGATACCATGCTCTTTGATGA
GTAAATCAGTTGCAAGGTGATTTCGGCCGCTTTTTGGAACCGTCTAGGCT
GCTGCCAATGGCGTTCCATTCTTAAGCTCCAATGCAGAGGATGTATTCAG
GTCAAAGTCCCTTATTCACGTCACGCTTATCTACTCTGCTTAATAATTGT
TACCTCGCCAGAGCAAGATCCACCTTTCGTACAATTGTTGGGCTCGACCG
TTTAAGGACGTATTTGAAGCCCTCCAAGATTTCATTTTTACATCAATCAC
CCCATACCTTATCTGGGGGACTGCTAATTGATCATGAATAAATCATATCC
CCTATTTTTTGCCATAATCTTTTATCCAAGTTGAAATACGCTGAGTGGGG
AATTGTGAAATTCTTTAGAAGTCCCAATGTTATCGAAATCGGTGGTTCTG
CTATGAAAGCATCGGTATGGAAAATAAAGTACAAAGTGAAAAAGGTACAC
AACACATGACGGGCTTAAGACGGGTAATTAAAATATCTTTGAATCCTTTT
GAATTTCACGCTTATTTCAGTAACTCGGCCACGTGTTCGCCATTTAAGGG
CGCGGAAGTGGCGGCAAAAATATAAACTCAAGACAAGACTCTGAGCTGTC
ATGTTCGGTTGATCAAACTTTGAGGGCTTCATTCTGGGGCAAAATTGTTT
CTGTCAGATTTGGCTTCAGGTGGCCTATTGTGGCTTCCGCGCGCAGCTTA
GAGTGTTGACAGACTCTTGAAAAC

Coding sequence (CDS) from alignment at CM002462.1:132443..137666+

>rna3819 ID=rna3819|Name=rna3819|organism=Nannochloropsis gaditana|type=CDS|length=1731bp|location=Sequence derived from alignment at CM002462.1:132443..137666+ (Nannochloropsis gaditana)
ATGTCGAGTACAAAGGCATTTTTGTCGCGGAGCGTCATACTCGTCGCCAT
TTTGGCTTACCTCTTGCGTCCCATCAATCGTCCATCTTTTACCGTAATTG
AACCTCTTAATCCACAAGACCCCATCAACCTACCGTCTGGTACTTCTCGC
CGCGTCCTTGTCGCAGGAGGCGGCCTGGCAGGGTTATCGGCCGCCTTGGA
ATTGGCTGAACGCGGGTTTCAGGTTTCTGTATGGGAAGCCTCCCCTGTAT
TAGGTGGCAGATTGGCCACGCGAACGGTGCAACTTTGCAATCAGACCTTT
GCAATAGAGCATGGTTTCCACGCCTGGTTCGCAAATTATCACGTTTTCGC
CGACATTCGAAAACGATTGGGCATTGACCATTATTTTCGACCGTGGGGTG
CCGTCCAATTTATCTTTAAAGACCCTCGGTACAAACCAGAAGCTCTGGAA
AGTCAAGGGCCATACCCATGGAATCTAATCTCCATCGTCCTCCGTTCCCC
CAATCTCCGCTTCATCGACGCCATCCTTTCCACCCGCCATGTCGTGGATT
TGCTCTGGTTCGACCACAAAACTGTCTGGGGCAAGTACGACGAGCAATCT
TTTTCGGAATGGGCTCGGGCCATGGGGATTGCCCGGGTATTCTACGACGT
GCTGTACGCGCCCACGCTATCCGTGACGGTCAACGAGCGGCAAAACATCA
GTGCTGCGGAAATGCTGAGCATGAACCACATATATTTCCTCAGCCATCCC
AGGGCGGACCGTCGCGAGGTGACCCGGGTTGATTACGAAACGGCGATTAT
CCAGCCGTGGGAAATGCGGTTGCAGGCGTTGGGGGTGAAGATcgagcgag
ggaagagggtgggaagactCAATTTCACCGAGACAGGGGTCCATGttgtc
gaggaagaggaagagggggaggaaggggtagcTGGGAGCGACTTTGATCA
TGTCGTGCTCGCCACGAATCTGCAAGGGGTCAAGTCGATCCTGGatgctt
cctccgtctcccccccttcctccctctcgtccccctcccctccttccacc
gcgtcgtccttctcgtACGTGACGAGCAcggccgccctcgcccagctcCG
TCATCAAACTTCCTTTTTAGAAATTGCTCCCCCTTACAAGGTGTTCCGCG
CCTATTTCGACCGACAGCTCCGGGGACCGTACAACCAAGAGATCGTGCTG
GAGACCCCAgactcctcccccatcaACCTGATCGCCCAGTATCacctcct
ggaggaggagtcggcCGAATGGGCCCGCCGAACGGGGGGCAGCGTCATCG
AGTTCCATTTGTAtacgtgggagggggggtacgacggggggaagggggac
aaATTCGcagcaggagaggaagtgcGTGTCCTCTGGGAGTTCCTTCGGCC
CACCGTGTGCGGGCATCTGCTTCCCGAAATGTGTGCGCAAAACTTCACGT
TGGTGGATGGGTATGTGGCCCATTACGAGGATTTCCCGTCCTTCAAAAAG
GGCTTGCACAAATACCGCCCCCGAAGCCAGACGCCCCACCAACTGGGCCT
GACTCGCTTGAGCCTCGCAGGGGACTGGCTCTCCACCAGTTTCCCTTCCG
CGCTGATGGAACGGGCGGTGGCaacggggcgggaggcggccaacGTGGTG
ttgcaagaggaggggatccgCCAGGCGCCACTGCCCGTCACGACTTCTCA
CGGGCCAGGACTGCGGGTGCTGGCTtcgtag

Synonyms

Publications