|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100097g4.3752.mrna |
| Orig protein id | gnl|cribi|Naga_100097g4.3752 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:130627..131943 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3818 ID=rna3818|Name=rna3818|organism=Nannochloropsis gaditana|type=mRNA|length=1742bp
CACCTCGCTCATCACCGCCATAATTCACACATAGCACTCGGGAAAAGGGT
CCCTACACCCGTGTCCGCGCGCGTCATGTCTTCAAAGGGACGATGAGCAT
GGGCATGAGTGGGCTTCGTGGGTTTCGATTTGAGCAAGGGCTGCTTTGCG
ACGATAGCCTTTCTTGGTGCCTTCTATTTATTGACTTTCTCGCAACTTCT
CGTCTCCGAATCGATGAAAAAACGATTTAACCTGCCCACAACACTCTCCA
CGAAGCCAAGCGCAGCGGCATGGTCGACGCGGGCCTGGAAGCCGAAGAGC
CAAACATTTTGGTCATCGTTATCGATGCCGATCCAGCAAGCTGGCAGCGG
ATACACTCAGGCGAACTCGCGCGCCCACAGGATAGGCCTTCCTCAGAAGC
CCCACAGATATTCATGACCTTTCCCCACCTTCTCGACACTCTTATGGTCT
TTATCGATGCCTACCTGCTAACGCACCGGGCGAATCGCGTGGCAGTGGTC
GCCGCTTTACACGACAAGAGCGACTTCCTCTACCCGCCTCCCGTCCCAGC
TCCGCCGCCGTCAGACCCCCCCAAGTCCGAAGGGCCAACAAAAGCTCCCG
TCATCAAGCTCGAAAAGATGGTCTATGAGGCTGCGTGCGACCAGCATGCA
ACCGTCGCAGCAGTCGAAGGGGGGCAAGACGGCGTGGATGCCCTCAAGAC
GAACGGAGCGACCTCAAAAGGCCCCCCCCTGGCCCCTGTGTCCCCGCCCT
CGGGAGGGAGTGAATCAGAACGCGTCAGCCACGCGGTCACCCGCGGTCTG
CAACGCTTGCTCGCCCCCACATCTGCCGTTGCCTTGGACGGTCCTGAGGT
CTCGGGGCCAGGAGCTCGTCCTGAGGTCTCGGGGCCAGGAGCTCGGCCCT
CCCTCCGACCCGTATCCCGGACCTCCCAAGCGCTCTCCAAAAGCCTGTGC
TACATCCAACGGGCCCTTCGGGAATCACCGTCCCTGTCCGCCCGCATGCT
CGTACTCCAGGCCTCCGCGGACGCGCACGGGGACTACAACGCCTTCATGA
ACTGCACCTTCTCGGCCCAGCGGTCCTCTGTGCCCATCGACGCCGCCGTC
TTTTCCTCCCCGGCCTCGGTCCACAAAGACTCGTCTTTCCTTCAGCAGGC
CTCGTACATCACGGGGGGTGTCTACGTCCGACCCGATCGACCGGAGGCCT
TGCTGCAATATTTCCTCCATCTCTTCCTCCCCTCCCATCATCTCCGCCAA
GCACTGCGACTTCCCAAGCAGGAATCTGTTGACTTCCGTGCAGCGTGTTT
CTGCCATCGGAAAGCAGTGGAGCAAGCCTACGTGTGCTCGGTATGTTTGA
GTATTTTCTGTGCGTTTGCCCCGGAATGTGCCACCTGTGGCACACCGGCC
CGTCCCCTGAAAGGTAGTGGAAAAGGGGCAGGGAGACGGTCGCGGGACTG
ACGGAGGTCAAGGAGGGGAAGGGAAAGGTGCAGAGAGACGGTGTCGTGTC
AACTCATAATATGTACAGAGGCGAAACTAATTAACAGGGGCAAAAGCTTG
TTTCTTCCTTCAAAAACAAATTAAAGAAAATCAACTATTCAGCTTAAACA
AGGCACCGAGGCTGTAATAGTGTAATAGATAGTCAGGAAATTGGCTGATT
AATTCCGATATGCCGTGGATGAGATGCTCGACGTCGACTTTACATGAGAT
GAGCATACCGGCCTAGGTCCCGAACCCGAGAAAATGGACACA back to topprotein sequence of rna3818 >rna3818-protein ID=rna3818-protein|Name=rna3818|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MWFPIERKSYFCFGPPGVWSKSCVLLRAFVVRLVSFAGASHILRQAAERA
VLFCSKKSLKVITFPFLPLIINIIGCFRLERSMASTCSSDHRVMRTEGPC
GCVVEVGSSQAGATPANTTSPKCSCTCCGDNCRCTETKGRCDCAERMEAA
AKKDQPTTICAEAPKGCALELGGSDVCATCGRKGCRCIALKGRCECPVTS
TGCCTPEAGVEEACPTCNRTGCRCIALKGHCGCAK back to topmRNA from alignment at CM002462.1:130627..131943+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3818 ID=rna3818|Name=rna3818|organism=Nannochloropsis gaditana|type=mRNA|length=1317bp|location=Sequence derived from alignment at CM002462.1:130627..131943+ (Nannochloropsis gaditana)
CGCGCCACTATTTAATAGCGCTCTAACTTGGGTGAAGCATTCATATCTTC
AAAAGACGCGTGTGATTCTTCCACAAAAAAGAGATGAGGTATACTTGCTG
GCATATTTCCTTTTACGAAGGAAAAAGTATTGCCGTGGTCACATTGTCCC
GGTAGAGGATGTCTGTATGGCCCCGCGGAAGGAGAACTTCAAGACCTCGC
TTGTGATTCCTTTTTTTTATTAAGCAGGACATACAGCGCAATGTGGTTCC
CAATAGAGAGGAAGTCGTACTTTTGCTTCGGCCCACCAGGTGTTTGGTCA
AAGTCGTGCGTTTTGCTCCGTGCATTTGTCGTGCGACTTGTTTCGTTTGC
TGGTGCTTCGCATATTCTTCGTCAAGCGGCCGAACGAGCCGTCCTGTTCT
GTTCGAAAAAGTCTCTCAAAGTCATcactttcccctttctcccactAATC
ATAAACATCATTGGTTGCTTCAGACTCGAACGAAGTATGGCCAGCACGTG
TTCCTCCGACCATCGCGTCATGCGAACCGAAGGCCCGTGTGGATGCGTCG
TGGAAGTAGGTAGCAGCCAAGCCGGAGCTACCCCCGCCAACACGACGTCC
CCAAAATGCTCCTGCACCTGTTGTGGAGATAATTGCCGTTGCACTGAAAC
GAAGGGGCGATGCGACTGCgcggagaggatggaggcggcagcCAAAAAGG
ATCAGCCAACGACGATTTGCGCAGAAGCGCCCAAGGGCTGCGCATTGGAG
CTGGGCGGGTCCGATGTTTGCGCGACGTGCGGCCGGAAGGGCTGTCGTTG
CATTGCCTTGAAAGGCCGCTGCGAGTGTCCCGTCACGTCCACAGGATGTT
GCACTCCGGAAGCtggtgtggaggaggcctgtCCTACTTGCAACCGAACG
GGCTGCAGATGCATCGCTCTCAAAGGACATTGTGGATGCGCCAAGTGACC
GTAGAAGGCCATTGTTCGAATTTTCGCCTATCATACCAAAGATGTCTCGA
GGTTGAGGCCATGGTAAGGAATACATATACATGTTATGAGAGATACGCGT
AGTGAAGTTGAGGTAGCCAGAGATGAAGTTGTCAGCTCATGAGGAGTGGC
GCAGGCGCATGCCAAAATTGTAGGTGAACATCTCGCTTGGCATGATTCGT
AGGTTGGAGAGTCTTGAATTCATCTTTGCGCAGTATTGAACAGCAGTATC
GGCCGGTCCAGAAGAGGCGTAAAGCtgacgaggaagaaatgaagTCAATA
AGTGAGCGAGCTTGTCGTTCTACTTCGATAAAAACGTATTTCAAACTAAG
TTTTGGGCGGAAATGTC back to topCoding sequence (CDS) from alignment at CM002462.1:130627..131943+ >rna3818 ID=rna3818|Name=rna3818|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002462.1:130627..131943+ (Nannochloropsis gaditana)
ATGTGGTTCCCAATAGAGAGGAAGTCGTACTTTTGCTTCGGCCCACCAGG
TGTTTGGTCAAAGTCGTGCGTTTTGCTCCGTGCATTTGTCGTGCGACTTG
TTTCGTTTGCTGGTGCTTCGCATATTCTTCGTCAAGCGGCCGAACGAGCC
GTCCTGTTCTGTTCGAAAAAGTCTCTCAAAGTCATcactttcccctttct
cccactAATCATAAACATCATTGGTTGCTTCAGACTCGAACGAAGTATGG
CCAGCACGTGTTCCTCCGACCATCGCGTCATGCGAACCGAAGGCCCGTGT
GGATGCGTCGTGGAAGTAGGTAGCAGCCAAGCCGGAGCTACCCCCGCCAA
CACGACGTCCCCAAAATGCTCCTGCACCTGTTGTGGAGATAATTGCCGTT
GCACTGAAACGAAGGGGCGATGCGACTGCgcggagaggatggaggcggca
gcCAAAAAGGATCAGCCAACGACGATTTGCGCAGAAGCGCCCAAGGGCTG
CGCATTGGAGCTGGGCGGGTCCGATGTTTGCGCGACGTGCGGCCGGAAGG
GCTGTCGTTGCATTGCCTTGAAAGGCCGCTGCGAGTGTCCCGTCACGTCC
ACAGGATGTTGCACTCCGGAAGCtggtgtggaggaggcctgtCCTACTTG
CAACCGAACGGGCTGCAGATGCATCGCTCTCAAAGGACATTGTGGATGCG
CCAAGTGA back to top
|