rna3811, rna3811 (mRNA) Nannochloropsis gaditana

Overview
Namerna3811
Unique Namerna3811
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1036
Alignment locationCM002462.1:115528..115789 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_104506g1.1555.mrna
Orig protein idgnl|cribi|Naga_104506g1.1555
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:115528..115789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_104506g1gene3669Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26871.1cds3802Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3811rna3811-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3811 ID=rna3811|Name=rna3811|organism=Nannochloropsis gaditana|type=mRNA|length=1036bp
CTTCCTGCAGGCGGTCGCGTCGTCGTCCTGGGCGAAACGGGAAGGAATTT
CGCGGCAGGGATGAGTGGTGGCATTGCTTACATTCTTGACCCAGAGCGGG
CCTTCCCAGACCGGTGCAACAAGGGATTGGTTGCTTTGGAGACGGTCGAG
ACAGAGGAAGAGGCGGCCCTCCTGAAATCCTACATCCAGGAACACGTGCA
AATGACAGGATCGGAAGTGGGCAAAAAAGTTTTGGCGGAATGGCCCGCCC
CTATCCATCAATTCGTCAAGGTCATGCCCATCGACTACAAGCGTGTCCTC
CGGCAGTTGGCTGAGGAAGGCGAGGAGGAAAATAGTGGGGACGAGGCACA
GGTGGCCATCTCCTACTGAGGGGCGGGAGAAGGAATGGAAGAGGACGGGA
GGGAGAGGGAGGAGGAAGACGGTACATGCGGGGGATGATTTATGGGAGAG
AGCGGTGGAATTTATGACGTTGATAATGAGAAGGTACGAAACGGATACAC
AGGACTTGATAGGAAGAAAGGATAATTACTGAAATGTTGCGAGGATCGAC
AGGATTTAAATGGAGCGCCAATAATTCGGGGATGGTGATGCTCTCTGTGG
TTGATCTCTTCCTCTGTGCGCGTAGGCTGAGTCTTGCCTTGAGAGGTCAT
GACGGAATGGGGAAATGTGGTGGTGCGTGGCACGGAAAGCCGTCGATCGT
CTGATTCGTGTTGCGTGGCCTCCATTTCGACGCTGAAGAAGAGGGAAGCA
GAAAGGAAGGGCGGGAGGTGAGAGAGGAAACTTAGTAGAGCGATGCATGG
TTGTACATAATCACTAGGAGAGGGTACGAAGCAGCTGTTGGATATTATAG
AGAGGCGTGATAAAAGAAAACCAGAGAATGACTAGATGCAAGTCCGGGGG
AGGCAGCCGAGGCCATCCTCGCTCTTCCGCGTTGCGGCCGTTGGGCCTTA
GAGGGATAAGAGCATACATTCAATCTTTGCGAAAAGCCTCCTTTATGTCT
TTGTCCCGCCATTAAGTTTCTACGAAAAAGCGTTGC
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protein sequence of rna3811

>rna3811-protein ID=rna3811-protein|Name=rna3811|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MNHDGHVQARAQIAFTDEELVYAYRKALAKGILKVAVSRPPSRPPPALPR
LSLLVHSPVSPSLPPFDTFSFSPG
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mRNA from alignment at CM002462.1:115528..115789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3811 ID=rna3811|Name=rna3811|organism=Nannochloropsis gaditana|type=mRNA|length=262bp|location=Sequence derived from alignment at CM002462.1:115528..115789- (Nannochloropsis gaditana)
TCCCAGCCCTTTACAAGATGAATCACGACGGTCACGTGCAAGCGCGGGCC
CAAATTGCCTTCACGGACGAGGAGCTCGTCTATGCGTACCGCAAGGCTCT
GGCCAAGGGCATCCTCAAGGTCGCTGTCTCCCGCCCTCCCTCCCGCCCTC
CCCCCGCCCTCCCTCGGCTGTCTCTCCTTGTCCATTCCCCCGTCTCTCCG
TCTCTCCCTCCCTTCGACACTTTCTCCTTCTCTCCGGGGTAATCGCACCC
ATATTTACCTCC
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Coding sequence (CDS) from alignment at CM002462.1:115528..115789-

>rna3811 ID=rna3811|Name=rna3811|organism=Nannochloropsis gaditana|type=CDS|length=225bp|location=Sequence derived from alignment at CM002462.1:115528..115789- (Nannochloropsis gaditana)
ATGAATCACGACGGTCACGTGCAAGCGCGGGCCCAAATTGCCTTCACGGA
CGAGGAGCTCGTCTATGCGTACCGCAAGGCTCTGGCCAAGGGCATCCTCA
AGGTCGCTGTCTCCCGCCCTCCCTCCCGCCCTCCCCCCGCCCTCCCTCGG
CTGTCTCTCCTTGTCCATTCCCCCGTCTCTCCGTCTCTCCCTCCCTTCGA
CACTTTCTCCTTCTCTCCGGGGTAA
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Synonyms
Publications